Wall clock time and date at job start Mon Mar 30 2020 01:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46936 * 2 1 4 4 C 1.36935 * 120.00141 * 90.07794 * 3 2 1 5 5 H 1.08000 * 119.99581 * 178.88856 * 4 3 2 6 6 C 1.38806 * 120.00043 * 358.89422 * 4 3 2 7 7 N 1.31625 * 119.99960 * 330.01286 * 6 4 3 8 8 Si 1.86800 * 120.00223 * 150.29307 * 6 4 3 9 9 H 1.48501 * 109.46938 * 264.72915 * 8 6 4 10 10 H 1.48502 * 109.46922 * 24.72342 * 8 6 4 11 11 H 1.48496 * 109.47170 * 144.72851 * 8 6 4 12 12 C 1.46500 * 119.99718 * 270.08074 * 3 2 1 13 13 H 1.08999 * 109.47335 * 175.89566 * 12 3 2 14 14 C 1.53001 * 109.47178 * 55.88962 * 12 3 2 15 15 C 1.50698 * 109.47067 * 295.89290 * 12 3 2 16 16 C 1.38241 * 119.99974 * 327.63494 * 15 12 3 17 17 C 1.38231 * 119.99764 * 179.78976 * 16 15 12 18 18 C 1.38234 * 120.00331 * 0.46368 * 17 16 15 19 19 C 1.50704 * 120.00349 * 179.79288 * 18 17 16 20 20 C 1.53006 * 109.46911 * 239.97906 * 19 18 17 21 21 C 1.53005 * 109.46865 * 359.97360 * 19 18 17 22 22 C 1.52992 * 109.47239 * 119.97580 * 19 18 17 23 23 C 1.38232 * 119.99999 * 359.76643 * 18 17 16 24 24 C 1.38232 * 119.99881 * 0.02705 * 23 18 17 25 25 H 1.09008 * 109.46773 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47060 * 300.00073 * 1 2 3 27 27 H 1.09002 * 109.47234 * 60.00790 * 1 2 3 28 28 H 1.08998 * 109.47060 * 239.99927 * 2 1 3 29 29 H 1.09005 * 109.46741 * 119.99776 * 2 1 3 30 30 H 0.96993 * 119.99677 * 180.28208 * 7 6 4 31 31 H 1.08995 * 109.47386 * 300.00021 * 14 12 3 32 32 H 1.09004 * 109.46895 * 60.00279 * 14 12 3 33 33 H 1.09001 * 109.47019 * 180.02562 * 14 12 3 34 34 H 1.07993 * 120.00057 * 0.02562 * 16 15 12 35 35 H 1.08000 * 119.99982 * 180.25480 * 17 16 15 36 36 H 1.09000 * 109.47284 * 59.99716 * 20 19 18 37 37 H 1.08997 * 109.46625 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.46826 * 299.99438 * 20 19 18 39 39 H 1.09007 * 109.46400 * 60.00391 * 21 19 18 40 40 H 1.08993 * 109.46707 * 179.97438 * 21 19 18 41 41 H 1.09000 * 109.47383 * 300.00316 * 21 19 18 42 42 H 1.09005 * 109.47241 * 60.00524 * 22 19 18 43 43 H 1.09004 * 109.46952 * 180.02562 * 22 19 18 44 44 H 1.09001 * 109.47397 * 299.99856 * 22 19 18 45 45 H 1.08000 * 120.00292 * 180.02562 * 23 18 17 46 46 H 1.08000 * 120.00227 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2481 2.0262 1.1859 5 1 2.6251 3.0383 1.1858 6 6 1.9965 1.3793 2.3879 7 7 1.0487 0.4687 2.4594 8 14 2.9977 1.8065 3.9060 9 1 4.1248 0.8492 4.0411 10 1 3.5326 3.1855 3.7741 11 1 2.1315 1.7244 5.1094 12 6 2.2608 2.0724 -1.2688 13 1 2.5481 3.1050 -1.0709 14 6 0.9851 2.0507 -2.1132 15 6 3.3695 1.3769 -2.0158 16 6 4.3942 0.7642 -1.3189 17 6 5.4088 0.1225 -2.0041 18 6 5.4040 0.1016 -3.3863 19 6 6.5127 -0.5939 -4.1333 20 6 7.2332 0.4139 -5.0312 21 6 7.5069 -1.1881 -3.1335 22 6 5.9238 -1.7136 -4.9936 23 6 4.3819 0.7184 -4.0832 24 6 3.3649 1.3564 -3.3980 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 0.8702 0.0196 3.3004 31 1 0.6978 1.0181 -2.3111 32 1 0.1831 2.5538 -1.5729 33 1 1.1656 2.5646 -3.0574 34 1 4.4000 0.7837 -0.2392 35 1 6.2072 -0.3597 -1.4596 36 1 7.6528 1.2117 -4.4183 37 1 8.0353 -0.0891 -5.5712 38 1 6.5250 0.8372 -5.7435 39 1 6.9935 -1.9061 -2.4938 40 1 8.3084 -1.6915 -3.6738 41 1 7.9264 -0.3903 -2.5206 42 1 5.2156 -1.2903 -5.7060 43 1 6.7258 -2.2170 -5.5336 44 1 5.4105 -2.4316 -4.3540 45 1 4.3778 0.7017 -5.1631 46 1 2.5665 1.8386 -3.9425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615354331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:44 Heat of formation + Delta-G solvation = 39.308703 kcal Electronic energy + Delta-G solvation = -22273.963163 eV Core-core repulsion = 19357.027043 eV Total energy + Delta-G solvation = -2916.936121 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.62471 -37.30137 -35.35171 -32.41911 -30.71922 -30.12808 -28.66761 -28.04318 -27.24980 -27.17417 -24.16780 -22.85955 -21.72691 -21.24317 -19.56246 -18.66458 -16.78281 -16.23078 -15.18831 -14.65231 -14.43341 -14.21761 -14.08912 -13.83736 -13.55601 -13.02287 -12.88798 -12.62549 -12.30686 -12.13586 -11.99165 -11.86329 -11.70596 -11.56673 -11.48712 -11.25832 -11.00088 -10.94921 -10.81652 -10.65569 -10.57632 -10.32220 -10.16898 -10.05320 -9.78021 -9.56717 -9.21264 -8.33931 -8.25365 -7.88667 -6.91662 -5.75682 -2.98855 1.90652 1.99331 3.42042 3.51327 3.51890 4.29372 4.55268 4.73003 4.83630 5.04995 5.27304 5.36086 5.42681 5.48506 5.54680 5.58829 5.61287 5.67164 5.75445 5.85518 5.86567 5.91768 6.04394 6.10173 6.11926 6.14250 6.19125 6.31742 6.37675 6.39983 6.59869 6.67063 6.71960 6.74215 6.93150 7.01652 7.03353 7.13918 7.16331 7.27304 7.42860 7.62998 7.74473 7.85216 8.21226 8.37992 9.28607 9.92303 10.37915 11.28192 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.005168 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.394420 B = 5416.816157 C = 6054.577997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.172 3.828 3 N -0.588 5.588 4 C -0.252 4.252 5 H 0.075 0.925 6 C 0.003 3.997 7 N -0.888 5.888 8 Si 0.882 3.118 9 H -0.290 1.290 10 H -0.281 1.281 11 H -0.295 1.295 12 C 0.206 3.794 13 H 0.072 0.928 14 C -0.159 4.159 15 C -0.082 4.082 16 C -0.087 4.087 17 C -0.129 4.129 18 C -0.089 4.089 19 C -0.027 4.027 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.125 4.125 25 H 0.014 0.986 26 H 0.091 0.909 27 H 0.018 0.982 28 H 0.005 0.995 29 H 0.080 0.920 30 H 0.251 0.749 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.473 -1.970 -13.676 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 N -0.309 5.309 4 C -0.380 4.380 5 H 0.093 0.907 6 C -0.195 4.195 7 N -0.533 5.533 8 Si 0.712 3.288 9 H -0.218 1.218 10 H -0.207 1.207 11 H -0.222 1.222 12 C 0.097 3.903 13 H 0.090 0.910 14 C -0.217 4.217 15 C -0.084 4.084 16 C -0.105 4.105 17 C -0.147 4.147 18 C -0.089 4.089 19 C -0.027 4.027 20 C -0.193 4.193 21 C -0.200 4.200 22 C -0.194 4.194 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.033 0.967 26 H 0.110 0.890 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.127 0.873 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.405 -2.056 -13.505 16.039 hybrid contribution 0.348 0.122 0.861 0.936 sum 8.753 -1.934 -12.644 15.499 Atomic orbital electron populations 1.22515 0.99368 0.98009 1.01525 1.20714 0.92382 0.84414 0.97792 1.44223 1.75943 1.10884 0.99859 1.19293 1.37037 0.98357 0.83326 0.90715 1.24629 0.98443 0.99361 0.97029 1.70253 1.27760 1.30282 1.24999 0.86542 0.80996 0.77846 0.83369 1.21752 1.20687 1.22213 1.19213 0.90230 0.94806 0.86051 0.90988 1.22436 0.99337 1.01442 0.98517 1.21002 0.96826 0.97384 0.93208 1.21254 0.92594 0.95496 1.01186 1.21155 0.99265 1.00806 0.93515 1.19608 0.96002 0.99698 0.93560 1.19428 0.93485 0.94784 0.94953 1.21869 0.99781 0.98626 0.99034 1.21945 0.98352 1.00788 0.98879 1.21873 1.00414 0.97809 0.99280 1.20766 0.95029 0.99841 0.98734 1.21096 0.98491 1.00538 0.94209 0.96692 0.88998 0.96320 0.97702 0.90208 0.93909 0.92629 0.92628 0.94001 0.84865 0.86582 0.92603 0.92871 0.92600 0.92244 0.92899 0.92302 0.92596 0.92870 0.92527 0.87323 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.41 37.16 0.35 -3.28 16 2 C 0.17 4.13 4.67 -4.04 -0.02 4.11 16 3 N -0.59 -13.98 1.51 -166.98 -0.25 -14.23 16 4 C -0.25 -6.61 9.60 -15.06 -0.14 -6.75 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 7 N -0.89 -24.52 8.47 55.49 0.47 -24.05 16 8 Si 0.88 21.26 29.64 -169.99 -5.04 16.22 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 12 C 0.21 4.16 3.13 -69.08 -0.22 3.94 16 13 H 0.07 1.48 7.78 -51.93 -0.40 1.08 16 14 C -0.16 -2.87 7.21 37.16 0.27 -2.60 16 15 C -0.08 -1.52 4.80 -104.62 -0.50 -2.02 16 16 C -0.09 -1.65 8.91 -39.58 -0.35 -2.01 16 17 C -0.13 -2.11 8.98 -39.59 -0.36 -2.46 16 18 C -0.09 -1.28 4.76 -104.62 -0.50 -1.78 16 19 C -0.03 -0.31 0.85 -155.66 -0.13 -0.44 16 20 C -0.14 -1.40 8.29 37.16 0.31 -1.09 16 21 C -0.14 -1.54 7.13 37.16 0.27 -1.28 16 22 C -0.14 -1.45 8.29 37.15 0.31 -1.14 16 23 C -0.13 -1.83 8.71 -39.59 -0.34 -2.18 16 24 C -0.12 -2.01 9.14 -39.58 -0.36 -2.37 16 25 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 26 H 0.09 2.44 6.18 -51.93 -0.32 2.12 16 27 H 0.02 0.40 5.41 -51.93 -0.28 0.11 16 28 H 0.00 0.11 7.34 -51.93 -0.38 -0.27 16 29 H 0.08 2.15 5.92 -51.93 -0.31 1.84 16 30 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.05 1.04 6.33 -51.93 -0.33 0.71 16 32 H 0.05 1.06 8.01 -51.93 -0.42 0.65 16 33 H 0.04 0.63 6.53 -51.93 -0.34 0.30 16 34 H 0.13 2.84 7.41 -52.49 -0.39 2.46 16 35 H 0.12 1.72 5.90 -52.49 -0.31 1.41 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.56 7.39 -51.93 -0.38 0.17 16 39 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 42 H 0.05 0.58 7.39 -51.93 -0.38 0.19 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.11 1.35 7.10 -52.49 -0.37 0.98 16 46 H 0.12 1.69 6.11 -52.49 -0.32 1.37 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -27.01 344.49 -8.94 -35.96 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.80 Total: 2.27 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.51 Total: -21.36 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.22 Total: -38.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.04 Total: 16.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.01 -8.94 -35.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615354331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.265 kcal (2) G-P(sol) polarization free energy of solvation -27.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds