Wall clock time and date at job start Mon Mar 30 2020 01:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46936 * 2 1 4 4 C 1.36935 * 120.00141 * 90.07794 * 3 2 1 5 5 H 1.08000 * 119.99581 * 178.88856 * 4 3 2 6 6 C 1.38806 * 120.00043 * 358.89422 * 4 3 2 7 7 N 1.31625 * 119.99960 * 330.01286 * 6 4 3 8 8 Si 1.86800 * 120.00223 * 150.29307 * 6 4 3 9 9 H 1.48501 * 109.46938 * 264.72915 * 8 6 4 10 10 H 1.48502 * 109.46922 * 24.72342 * 8 6 4 11 11 H 1.48496 * 109.47170 * 144.72851 * 8 6 4 12 12 C 1.46500 * 119.99718 * 270.08074 * 3 2 1 13 13 H 1.08999 * 109.47335 * 175.89566 * 12 3 2 14 14 C 1.53001 * 109.47178 * 55.88962 * 12 3 2 15 15 C 1.50698 * 109.47067 * 295.89290 * 12 3 2 16 16 C 1.38241 * 119.99974 * 327.63494 * 15 12 3 17 17 C 1.38231 * 119.99764 * 179.78976 * 16 15 12 18 18 C 1.38234 * 120.00331 * 0.46368 * 17 16 15 19 19 C 1.50704 * 120.00349 * 179.79288 * 18 17 16 20 20 C 1.53006 * 109.46911 * 239.97906 * 19 18 17 21 21 C 1.53005 * 109.46865 * 359.97360 * 19 18 17 22 22 C 1.52992 * 109.47239 * 119.97580 * 19 18 17 23 23 C 1.38232 * 119.99999 * 359.76643 * 18 17 16 24 24 C 1.38232 * 119.99881 * 0.02705 * 23 18 17 25 25 H 1.09008 * 109.46773 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47060 * 300.00073 * 1 2 3 27 27 H 1.09002 * 109.47234 * 60.00790 * 1 2 3 28 28 H 1.08998 * 109.47060 * 239.99927 * 2 1 3 29 29 H 1.09005 * 109.46741 * 119.99776 * 2 1 3 30 30 H 0.96993 * 119.99677 * 180.28208 * 7 6 4 31 31 H 1.08995 * 109.47386 * 300.00021 * 14 12 3 32 32 H 1.09004 * 109.46895 * 60.00279 * 14 12 3 33 33 H 1.09001 * 109.47019 * 180.02562 * 14 12 3 34 34 H 1.07993 * 120.00057 * 0.02562 * 16 15 12 35 35 H 1.08000 * 119.99982 * 180.25480 * 17 16 15 36 36 H 1.09000 * 109.47284 * 59.99716 * 20 19 18 37 37 H 1.08997 * 109.46625 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.46826 * 299.99438 * 20 19 18 39 39 H 1.09007 * 109.46400 * 60.00391 * 21 19 18 40 40 H 1.08993 * 109.46707 * 179.97438 * 21 19 18 41 41 H 1.09000 * 109.47383 * 300.00316 * 21 19 18 42 42 H 1.09005 * 109.47241 * 60.00524 * 22 19 18 43 43 H 1.09004 * 109.46952 * 180.02562 * 22 19 18 44 44 H 1.09001 * 109.47397 * 299.99856 * 22 19 18 45 45 H 1.08000 * 120.00292 * 180.02562 * 23 18 17 46 46 H 1.08000 * 120.00227 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2481 2.0262 1.1859 5 1 2.6251 3.0383 1.1858 6 6 1.9965 1.3793 2.3879 7 7 1.0487 0.4687 2.4594 8 14 2.9977 1.8065 3.9060 9 1 4.1248 0.8492 4.0411 10 1 3.5326 3.1855 3.7741 11 1 2.1315 1.7244 5.1094 12 6 2.2608 2.0724 -1.2688 13 1 2.5481 3.1050 -1.0709 14 6 0.9851 2.0507 -2.1132 15 6 3.3695 1.3769 -2.0158 16 6 4.3942 0.7642 -1.3189 17 6 5.4088 0.1225 -2.0041 18 6 5.4040 0.1016 -3.3863 19 6 6.5127 -0.5939 -4.1333 20 6 7.2332 0.4139 -5.0312 21 6 7.5069 -1.1881 -3.1335 22 6 5.9238 -1.7136 -4.9936 23 6 4.3819 0.7184 -4.0832 24 6 3.3649 1.3564 -3.3980 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 0.8702 0.0196 3.3004 31 1 0.6978 1.0181 -2.3111 32 1 0.1831 2.5538 -1.5729 33 1 1.1656 2.5646 -3.0574 34 1 4.4000 0.7837 -0.2392 35 1 6.2072 -0.3597 -1.4596 36 1 7.6528 1.2117 -4.4183 37 1 8.0353 -0.0891 -5.5712 38 1 6.5250 0.8372 -5.7435 39 1 6.9935 -1.9061 -2.4938 40 1 8.3084 -1.6915 -3.6738 41 1 7.9264 -0.3903 -2.5206 42 1 5.2156 -1.2903 -5.7060 43 1 6.7258 -2.2170 -5.5336 44 1 5.4105 -2.4316 -4.3540 45 1 4.3778 0.7017 -5.1631 46 1 2.5665 1.8386 -3.9425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615354331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:43 Heat of formation + Delta-G solvation = 29.177120 kcal Electronic energy + Delta-G solvation = -22274.402502 eV Core-core repulsion = 19357.027043 eV Total energy + Delta-G solvation = -2917.375459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86360 -38.74550 -36.76706 -34.12822 -32.19884 -31.78182 -30.47476 -29.36993 -28.11850 -28.03371 -26.00972 -24.38190 -23.20992 -22.73931 -21.06484 -19.84666 -18.72512 -17.47954 -16.99317 -15.99859 -15.88908 -15.55618 -15.33619 -15.08495 -14.94227 -14.44449 -14.20136 -14.05188 -13.85042 -13.43531 -13.40306 -13.11449 -13.04821 -12.86527 -12.73794 -12.68101 -12.55315 -12.50056 -12.25857 -12.13782 -11.95499 -11.79655 -11.69394 -11.46451 -11.28302 -11.26447 -11.10282 -10.27575 -9.63082 -9.20634 -8.85769 -7.81145 -5.03113 0.62241 0.69318 1.45540 1.50876 1.56440 2.54751 3.01785 3.25898 3.67534 3.76531 3.93331 4.16765 4.18541 4.26233 4.35354 4.47403 4.53755 4.62455 4.69254 4.74093 4.76133 4.84001 4.92356 4.94344 4.97738 5.07074 5.07461 5.10219 5.13136 5.21259 5.22803 5.25058 5.30806 5.36868 5.37602 5.43251 5.50926 5.51222 5.64622 5.76536 5.83420 5.88966 6.05099 6.21323 6.32195 6.37388 7.24945 7.97917 8.39110 9.21379 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.005168 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.394420 B = 5416.816157 C = 6054.577997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.184 3.816 3 N -0.597 5.597 4 C -0.254 4.254 5 H 0.070 0.930 6 C -0.042 4.042 7 N -0.909 5.909 8 Si 0.937 3.063 9 H -0.295 1.295 10 H -0.275 1.275 11 H -0.300 1.300 12 C 0.200 3.800 13 H 0.062 0.938 14 C -0.147 4.147 15 C -0.101 4.101 16 C -0.110 4.110 17 C -0.136 4.136 18 C -0.081 4.081 19 C -0.027 4.027 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.122 4.122 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.013 0.987 29 H 0.046 0.954 30 H 0.245 0.755 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.141 0.859 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -2.071 -16.711 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.059 3.941 3 N -0.318 5.318 4 C -0.383 4.383 5 H 0.088 0.912 6 C -0.238 4.238 7 N -0.556 5.556 8 Si 0.767 3.233 9 H -0.223 1.223 10 H -0.201 1.201 11 H -0.227 1.227 12 C 0.093 3.907 13 H 0.080 0.920 14 C -0.205 4.205 15 C -0.103 4.103 16 C -0.129 4.129 17 C -0.154 4.154 18 C -0.081 4.081 19 C -0.027 4.027 20 C -0.191 4.191 21 C -0.201 4.201 22 C -0.192 4.192 23 C -0.138 4.138 24 C -0.140 4.140 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.062 0.938 45 H 0.158 0.842 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.568 -2.137 -16.563 19.247 hybrid contribution 0.076 0.153 1.709 1.718 sum 9.644 -1.984 -14.854 17.821 Atomic orbital electron populations 1.22329 0.98762 0.98386 1.00656 1.20443 0.92678 0.84547 0.96424 1.44274 1.76128 1.10818 1.00594 1.19474 1.36045 0.98261 0.84541 0.91177 1.25160 0.99334 1.00142 0.99132 1.70385 1.28720 1.31455 1.25002 0.85676 0.79368 0.77599 0.80610 1.22289 1.20053 1.22730 1.19370 0.91957 0.94179 0.85151 0.92023 1.22282 0.97413 1.01360 0.99463 1.20774 0.96397 0.98719 0.94384 1.21051 0.94442 0.97792 0.99591 1.21268 0.98800 1.00636 0.94710 1.19993 0.96705 0.98547 0.92842 1.19522 0.92687 0.95341 0.95189 1.21855 1.00348 0.98098 0.98769 1.21952 0.98740 1.00526 0.98835 1.21867 1.01134 0.97170 0.99041 1.21121 0.94010 0.98391 1.00298 1.21283 0.99470 1.00348 0.92947 0.95677 0.92107 0.94713 0.96914 0.93527 0.94572 0.93129 0.94035 0.90463 0.88523 0.85845 0.93426 0.90913 0.91960 0.93221 0.90865 0.92881 0.91977 0.90853 0.93758 0.84176 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.72 9.41 71.98 0.68 -6.04 16 2 C 0.18 9.08 4.67 86.38 0.40 9.48 16 3 N -0.60 -29.11 1.51 -682.20 -1.03 -30.14 16 4 C -0.25 -13.74 9.60 84.03 0.81 -12.94 16 5 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 6 C -0.04 -2.34 4.88 84.86 0.41 -1.93 16 7 N -0.91 -51.96 8.47 21.65 0.18 -51.78 16 8 Si 0.94 45.18 29.64 68.60 2.03 47.21 16 9 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 C 0.20 8.13 3.13 44.25 0.14 8.27 16 13 H 0.06 2.57 7.78 -2.39 -0.02 2.55 16 14 C -0.15 -5.10 7.21 71.98 0.52 -4.58 16 15 C -0.10 -3.70 4.80 -19.86 -0.10 -3.80 16 16 C -0.11 -4.28 8.91 22.27 0.20 -4.08 16 17 C -0.14 -4.40 8.98 22.27 0.20 -4.20 16 18 C -0.08 -2.16 4.76 -19.87 -0.09 -2.26 16 19 C -0.03 -0.55 0.85 -52.93 -0.05 -0.59 16 20 C -0.13 -2.24 8.29 71.98 0.60 -1.64 16 21 C -0.14 -2.78 7.13 71.98 0.51 -2.27 16 22 C -0.13 -2.38 8.29 71.98 0.60 -1.78 16 23 C -0.12 -3.12 8.71 22.27 0.19 -2.92 16 24 C -0.12 -3.63 9.14 22.27 0.20 -3.42 16 25 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 3.29 6.18 -2.39 -0.01 3.28 16 27 H 0.03 1.49 5.41 -2.39 -0.01 1.47 16 28 H 0.01 0.60 7.34 -2.39 -0.02 0.58 16 29 H 0.05 2.61 5.92 -2.38 -0.01 2.59 16 30 H 0.24 13.77 8.31 -92.71 -0.77 13.00 16 31 H 0.05 1.80 6.33 -2.39 -0.02 1.79 16 32 H 0.04 1.54 8.01 -2.39 -0.02 1.52 16 33 H 0.08 2.12 6.53 -2.39 -0.02 2.10 16 34 H 0.10 4.40 7.41 -2.91 -0.02 4.38 16 35 H 0.12 3.68 5.90 -2.91 -0.02 3.66 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.97 7.39 -2.39 -0.02 0.95 16 39 H 0.05 1.05 7.51 -2.38 -0.02 1.03 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.08 7.51 -2.39 -0.02 1.06 16 42 H 0.06 1.02 7.39 -2.38 -0.02 1.00 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.14 2.78 7.10 -2.91 -0.02 2.76 16 46 H 0.14 3.45 6.11 -2.91 -0.02 3.43 16 Total: -1.00 -59.69 344.49 7.35 -52.34 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.93 Total: 17.06 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 5.23 Total: -34.69 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -0.85 Total: -81.92 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -59.69 7.35 -52.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615354331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.516 kcal (2) G-P(sol) polarization free energy of solvation -59.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds