Wall clock time and date at job start Mon Mar 30 2020 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47150 * 2 1 4 4 C 1.36934 * 119.99878 * 95.47741 * 3 2 1 5 5 H 1.07997 * 120.00132 * 168.58574 * 4 3 2 6 6 C 1.38816 * 119.99886 * 348.58595 * 4 3 2 7 7 N 1.31614 * 120.00134 * 342.85109 * 6 4 3 8 8 Si 1.86803 * 120.00012 * 162.85696 * 6 4 3 9 9 H 1.48497 * 109.46978 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47289 * 119.99636 * 8 6 4 11 11 H 1.48500 * 109.47132 * 239.99810 * 8 6 4 12 12 C 1.46498 * 120.00164 * 275.20239 * 3 2 1 13 13 H 1.09007 * 109.47045 * 54.70926 * 12 3 2 14 14 C 1.53001 * 109.47339 * 174.71190 * 12 3 2 15 15 C 1.50698 * 109.47301 * 294.71471 * 12 3 2 16 16 C 1.38237 * 119.99845 * 313.68855 * 15 12 3 17 17 C 1.38233 * 120.00055 * 179.78627 * 16 15 12 18 18 C 1.38230 * 119.99941 * 0.44213 * 17 16 15 19 19 C 1.50700 * 120.00293 * 179.83377 * 18 17 16 20 20 C 1.53005 * 109.47456 * 239.98167 * 19 18 17 21 21 C 1.53004 * 109.47017 * 359.97438 * 19 18 17 22 22 C 1.53001 * 109.47450 * 119.97812 * 19 18 17 23 23 C 1.38237 * 120.00209 * 359.81064 * 18 17 16 24 24 C 1.38234 * 119.99710 * 359.97438 * 23 18 17 25 25 H 1.09000 * 109.46855 * 67.31127 * 1 2 3 26 26 H 1.08997 * 109.47056 * 187.30248 * 1 2 3 27 27 H 1.08999 * 109.46796 * 307.31123 * 1 2 3 28 28 H 1.09006 * 109.47104 * 240.00313 * 2 1 3 29 29 H 1.08999 * 109.46945 * 120.00249 * 2 1 3 30 30 H 0.97003 * 120.00748 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47047 * 179.97438 * 14 12 3 32 32 H 1.08997 * 109.46782 * 300.00313 * 14 12 3 33 33 H 1.09001 * 109.46634 * 59.99613 * 14 12 3 34 34 H 1.08007 * 120.00155 * 0.02562 * 16 15 12 35 35 H 1.08003 * 119.99971 * 180.27833 * 17 16 15 36 36 H 1.08998 * 109.46921 * 59.99626 * 20 19 18 37 37 H 1.08992 * 109.47209 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46781 * 299.99573 * 20 19 18 39 39 H 1.09012 * 109.46676 * 60.00380 * 21 19 18 40 40 H 1.08999 * 109.47311 * 179.97438 * 21 19 18 41 41 H 1.08998 * 109.47438 * 300.00421 * 21 19 18 42 42 H 1.09001 * 109.47187 * 60.00182 * 22 19 18 43 43 H 1.08999 * 109.47033 * 180.02562 * 22 19 18 44 44 H 1.09002 * 109.46794 * 300.00183 * 22 19 18 45 45 H 1.08004 * 120.00154 * 179.97438 * 23 18 17 46 46 H 1.08001 * 120.00063 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3533 1.9890 1.1805 5 1 2.8825 2.9304 1.1721 6 6 2.0126 1.3951 2.3880 7 7 1.0962 0.4510 2.4216 8 14 2.8547 1.9359 3.9653 9 1 3.8394 3.0045 3.6594 10 1 1.8389 2.4556 4.9158 11 1 3.5557 0.7772 4.5747 12 6 2.1541 2.1102 -1.2635 13 1 1.2033 2.0937 -1.7964 14 6 2.5526 3.5592 -0.9761 15 6 3.2156 1.4557 -2.1096 16 6 4.4276 1.1021 -1.5465 17 6 5.3996 0.4978 -2.3216 18 6 5.1632 0.2553 -3.6617 19 6 6.2242 -0.4002 -4.5076 20 6 6.6136 0.5360 -5.6534 21 6 7.4550 -0.6915 -3.6466 22 6 5.6816 -1.7105 -5.0816 23 6 3.9531 0.6136 -4.2260 24 6 2.9794 1.2139 -3.4499 25 1 -0.3633 0.3964 -0.9482 26 1 -0.3633 -1.0193 0.1306 27 1 -0.3633 0.6229 0.8174 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 0.8584 0.0356 3.2654 31 1 2.6540 4.1014 -1.9161 32 1 1.7848 4.0325 -0.3641 33 1 3.5032 3.5756 -0.4431 34 1 4.6136 1.2946 -0.5002 35 1 6.3448 0.2174 -1.8806 36 1 7.0002 1.4695 -5.2444 37 1 7.3814 0.0621 -6.2649 38 1 5.7369 0.7436 -6.2669 39 1 7.1776 -1.3586 -2.8302 40 1 8.2223 -1.1660 -4.2582 41 1 7.8416 0.2419 -3.2376 42 1 4.8049 -1.5030 -5.6951 43 1 6.4493 -2.1848 -5.6931 44 1 5.4043 -2.3775 -4.2653 45 1 3.7686 0.4245 -5.2732 46 1 2.0342 1.4942 -3.8909 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615354332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:46 Heat of formation + Delta-G solvation = 36.344930 kcal Electronic energy + Delta-G solvation = -22215.386851 eV Core-core repulsion = 19298.322212 eV Total energy + Delta-G solvation = -2917.064640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.60223 -37.22938 -35.36143 -32.33476 -30.61961 -30.40883 -28.84371 -27.37388 -27.25115 -27.22186 -24.54718 -22.65431 -21.80124 -21.17397 -19.69129 -18.78755 -16.50041 -15.88215 -15.45164 -14.80521 -14.47801 -14.22417 -13.87392 -13.67080 -13.54066 -13.22634 -12.89451 -12.63413 -12.43327 -12.16582 -12.04268 -11.81051 -11.70244 -11.60314 -11.24273 -11.13212 -11.11460 -10.83758 -10.78324 -10.70737 -10.53928 -10.30469 -10.16681 -10.03131 -9.86209 -9.53695 -9.26184 -8.35509 -8.33693 -7.91400 -6.77768 -5.64531 -3.02597 1.90245 1.97809 3.40676 3.48879 3.49845 4.27949 4.56206 4.72443 4.83159 5.04474 5.32897 5.37857 5.45829 5.47890 5.54166 5.58347 5.59659 5.69705 5.75178 5.85187 5.86508 5.94789 6.04344 6.09230 6.14153 6.16843 6.25616 6.31648 6.35833 6.43403 6.55220 6.65416 6.71174 6.80348 6.94239 7.02330 7.04912 7.11612 7.16178 7.27163 7.45259 7.60870 7.76375 7.91429 8.17050 8.47045 9.33296 9.95861 10.41352 11.37372 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.004876 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.553408 B = 5740.850456 C = 6027.627485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.171 3.829 3 N -0.589 5.589 4 C -0.243 4.243 5 H 0.080 0.920 6 C -0.008 4.008 7 N -0.903 5.903 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.294 1.294 11 H -0.292 1.292 12 C 0.206 3.794 13 H 0.036 0.964 14 C -0.134 4.134 15 C -0.080 4.080 16 C -0.086 4.086 17 C -0.129 4.129 18 C -0.088 4.088 19 C -0.026 4.026 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.122 4.122 25 H 0.003 0.997 26 H 0.020 0.980 27 H 0.084 0.916 28 H -0.001 1.001 29 H 0.092 0.908 30 H 0.248 0.752 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -0.909 -13.744 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.046 3.954 3 N -0.311 5.311 4 C -0.372 4.372 5 H 0.097 0.903 6 C -0.204 4.204 7 N -0.551 5.551 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.219 1.219 12 C 0.098 3.902 13 H 0.054 0.946 14 C -0.191 4.191 15 C -0.082 4.082 16 C -0.104 4.104 17 C -0.147 4.147 18 C -0.088 4.088 19 C -0.026 4.026 20 C -0.193 4.193 21 C -0.199 4.199 22 C -0.194 4.194 23 C -0.142 4.142 24 C -0.141 4.141 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.102 0.898 28 H 0.017 0.983 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.127 0.873 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.425 -0.978 -13.578 16.009 hybrid contribution 0.224 0.118 0.882 0.917 sum 8.649 -0.860 -12.696 15.386 Atomic orbital electron populations 1.22202 0.99537 0.99048 0.99002 1.20761 0.92148 0.84389 0.98119 1.44190 1.75815 1.10671 1.00464 1.19454 1.29220 1.05205 0.83333 0.90269 1.24766 0.98514 0.99721 0.97371 1.70182 1.31023 1.29634 1.24216 0.86277 0.79114 0.77616 0.84153 1.20615 1.22099 1.21876 1.19241 0.92765 0.90790 0.87407 0.94638 1.21846 1.02185 0.95321 0.99767 1.21034 0.96265 0.97244 0.93685 1.21118 0.92555 0.96618 1.00115 1.21134 0.99514 1.00565 0.93461 1.19591 0.94804 1.00423 0.94031 1.19426 0.93677 0.94904 0.94627 1.21870 1.01038 0.99110 0.97296 1.21945 0.96694 1.01646 0.99663 1.21877 1.00584 0.96285 1.00665 1.20754 0.93675 1.00757 0.98973 1.20993 0.98778 1.00268 0.94034 0.97835 0.96107 0.89771 0.98310 0.89047 0.94122 0.94158 0.91986 0.92249 0.85448 0.86567 0.92620 0.92856 0.92593 0.92234 0.92885 0.92332 0.92579 0.92857 0.92494 0.87280 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.53 37.16 0.35 -2.96 16 2 C 0.17 4.21 5.51 -4.04 -0.02 4.19 16 3 N -0.59 -14.21 2.13 -166.97 -0.35 -14.56 16 4 C -0.24 -6.30 8.94 -15.06 -0.13 -6.44 16 5 H 0.08 2.00 5.70 -52.49 -0.30 1.70 16 6 C -0.01 -0.20 5.07 -17.43 -0.09 -0.29 16 7 N -0.90 -25.14 8.27 55.49 0.46 -24.68 16 8 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 C 0.21 4.24 3.23 -69.08 -0.22 4.02 16 13 H 0.04 0.75 7.94 -51.93 -0.41 0.34 16 14 C -0.13 -2.51 7.82 37.16 0.29 -2.22 16 15 C -0.08 -1.50 4.14 -104.62 -0.43 -1.93 16 16 C -0.09 -1.60 9.21 -39.58 -0.36 -1.97 16 17 C -0.13 -2.07 8.98 -39.59 -0.36 -2.43 16 18 C -0.09 -1.28 4.76 -104.63 -0.50 -1.78 16 19 C -0.03 -0.30 0.85 -155.66 -0.13 -0.44 16 20 C -0.14 -1.38 8.29 37.16 0.31 -1.08 16 21 C -0.14 -1.52 7.13 37.16 0.27 -1.25 16 22 C -0.14 -1.47 8.29 37.16 0.31 -1.16 16 23 C -0.12 -1.83 8.71 -39.58 -0.34 -2.17 16 24 C -0.12 -2.02 9.67 -39.58 -0.38 -2.41 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 2.25 6.53 -51.93 -0.34 1.91 16 28 H 0.00 -0.03 7.50 -51.93 -0.39 -0.42 16 29 H 0.09 2.51 5.83 -51.93 -0.30 2.20 16 30 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.21 7.85 -51.93 -0.41 0.80 16 33 H 0.06 1.14 6.94 -51.93 -0.36 0.78 16 34 H 0.13 2.61 7.91 -52.48 -0.42 2.19 16 35 H 0.12 1.68 5.90 -52.48 -0.31 1.37 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.56 7.39 -51.93 -0.38 0.17 16 39 H 0.06 0.66 7.51 -51.92 -0.39 0.27 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 42 H 0.06 0.59 7.39 -51.93 -0.38 0.20 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.11 1.38 7.10 -52.48 -0.37 1.01 16 46 H 0.11 1.69 7.99 -52.49 -0.42 1.27 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -27.31 351.89 -9.17 -36.48 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.09 Total: 1.35 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.45 Total: -20.31 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.10 Total: -39.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.31 -9.17 -36.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615354332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.827 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds