Wall clock time and date at job start Mon Mar 30 2020 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47150 * 2 1 4 4 C 1.36934 * 119.99878 * 95.47741 * 3 2 1 5 5 H 1.07997 * 120.00132 * 168.58574 * 4 3 2 6 6 C 1.38816 * 119.99886 * 348.58595 * 4 3 2 7 7 N 1.31614 * 120.00134 * 342.85109 * 6 4 3 8 8 Si 1.86803 * 120.00012 * 162.85696 * 6 4 3 9 9 H 1.48497 * 109.46978 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47289 * 119.99636 * 8 6 4 11 11 H 1.48500 * 109.47132 * 239.99810 * 8 6 4 12 12 C 1.46498 * 120.00164 * 275.20239 * 3 2 1 13 13 H 1.09007 * 109.47045 * 54.70926 * 12 3 2 14 14 C 1.53001 * 109.47339 * 174.71190 * 12 3 2 15 15 C 1.50698 * 109.47301 * 294.71471 * 12 3 2 16 16 C 1.38237 * 119.99845 * 313.68855 * 15 12 3 17 17 C 1.38233 * 120.00055 * 179.78627 * 16 15 12 18 18 C 1.38230 * 119.99941 * 0.44213 * 17 16 15 19 19 C 1.50700 * 120.00293 * 179.83377 * 18 17 16 20 20 C 1.53005 * 109.47456 * 239.98167 * 19 18 17 21 21 C 1.53004 * 109.47017 * 359.97438 * 19 18 17 22 22 C 1.53001 * 109.47450 * 119.97812 * 19 18 17 23 23 C 1.38237 * 120.00209 * 359.81064 * 18 17 16 24 24 C 1.38234 * 119.99710 * 359.97438 * 23 18 17 25 25 H 1.09000 * 109.46855 * 67.31127 * 1 2 3 26 26 H 1.08997 * 109.47056 * 187.30248 * 1 2 3 27 27 H 1.08999 * 109.46796 * 307.31123 * 1 2 3 28 28 H 1.09006 * 109.47104 * 240.00313 * 2 1 3 29 29 H 1.08999 * 109.46945 * 120.00249 * 2 1 3 30 30 H 0.97003 * 120.00748 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47047 * 179.97438 * 14 12 3 32 32 H 1.08997 * 109.46782 * 300.00313 * 14 12 3 33 33 H 1.09001 * 109.46634 * 59.99613 * 14 12 3 34 34 H 1.08007 * 120.00155 * 0.02562 * 16 15 12 35 35 H 1.08003 * 119.99971 * 180.27833 * 17 16 15 36 36 H 1.08998 * 109.46921 * 59.99626 * 20 19 18 37 37 H 1.08992 * 109.47209 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.46781 * 299.99573 * 20 19 18 39 39 H 1.09012 * 109.46676 * 60.00380 * 21 19 18 40 40 H 1.08999 * 109.47311 * 179.97438 * 21 19 18 41 41 H 1.08998 * 109.47438 * 300.00421 * 21 19 18 42 42 H 1.09001 * 109.47187 * 60.00182 * 22 19 18 43 43 H 1.08999 * 109.47033 * 180.02562 * 22 19 18 44 44 H 1.09002 * 109.46794 * 300.00183 * 22 19 18 45 45 H 1.08004 * 120.00154 * 179.97438 * 23 18 17 46 46 H 1.08001 * 120.00063 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3533 1.9890 1.1805 5 1 2.8825 2.9304 1.1721 6 6 2.0126 1.3951 2.3880 7 7 1.0962 0.4510 2.4216 8 14 2.8547 1.9359 3.9653 9 1 3.8394 3.0045 3.6594 10 1 1.8389 2.4556 4.9158 11 1 3.5557 0.7772 4.5747 12 6 2.1541 2.1102 -1.2635 13 1 1.2033 2.0937 -1.7964 14 6 2.5526 3.5592 -0.9761 15 6 3.2156 1.4557 -2.1096 16 6 4.4276 1.1021 -1.5465 17 6 5.3996 0.4978 -2.3216 18 6 5.1632 0.2553 -3.6617 19 6 6.2242 -0.4002 -4.5076 20 6 6.6136 0.5360 -5.6534 21 6 7.4550 -0.6915 -3.6466 22 6 5.6816 -1.7105 -5.0816 23 6 3.9531 0.6136 -4.2260 24 6 2.9794 1.2139 -3.4499 25 1 -0.3633 0.3964 -0.9482 26 1 -0.3633 -1.0193 0.1306 27 1 -0.3633 0.6229 0.8174 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 0.8584 0.0356 3.2654 31 1 2.6540 4.1014 -1.9161 32 1 1.7848 4.0325 -0.3641 33 1 3.5032 3.5756 -0.4431 34 1 4.6136 1.2946 -0.5002 35 1 6.3448 0.2174 -1.8806 36 1 7.0002 1.4695 -5.2444 37 1 7.3814 0.0621 -6.2649 38 1 5.7369 0.7436 -6.2669 39 1 7.1776 -1.3586 -2.8302 40 1 8.2223 -1.1660 -4.2582 41 1 7.8416 0.2419 -3.2376 42 1 4.8049 -1.5030 -5.6951 43 1 6.4493 -2.1848 -5.6931 44 1 5.4043 -2.3775 -4.2653 45 1 3.7686 0.4245 -5.2732 46 1 2.0342 1.4942 -3.8909 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615354332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:46 Heat of formation + Delta-G solvation = 25.993043 kcal Electronic energy + Delta-G solvation = -22215.835743 eV Core-core repulsion = 19298.322212 eV Total energy + Delta-G solvation = -2917.513531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83417 -38.69770 -36.77676 -34.03814 -32.35416 -31.87659 -30.37820 -28.98399 -28.17017 -28.03699 -26.37240 -24.15324 -23.07129 -22.95734 -21.29074 -19.91857 -18.23501 -17.41554 -17.11450 -16.18247 -15.79894 -15.52093 -15.22324 -15.08267 -15.07869 -14.41468 -14.14287 -14.01825 -13.85760 -13.76445 -13.41222 -13.14102 -12.91303 -12.75028 -12.70115 -12.62391 -12.50013 -12.43210 -12.21186 -12.10448 -11.95838 -11.83318 -11.76648 -11.48493 -11.36690 -11.27933 -11.14545 -10.35167 -9.64712 -9.24176 -8.73296 -7.69054 -5.06496 0.61273 0.67869 1.47553 1.51204 1.58640 2.56954 3.00629 3.39019 3.68420 3.76054 3.92141 4.18074 4.18678 4.24778 4.33380 4.47071 4.56115 4.63077 4.71349 4.73298 4.75740 4.83921 4.90139 4.92643 4.94461 5.06263 5.07450 5.07805 5.13053 5.16523 5.23280 5.24208 5.28054 5.32267 5.40448 5.45129 5.46350 5.50701 5.69930 5.76223 5.85645 5.87384 6.04144 6.15400 6.30509 6.45122 7.29342 8.00918 8.42460 9.31803 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.004876 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.553408 B = 5740.850456 C = 6027.627485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.179 3.821 3 N -0.599 5.599 4 C -0.239 4.239 5 H 0.083 0.917 6 C -0.059 4.059 7 N -0.927 5.927 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.299 1.299 11 H -0.299 1.299 12 C 0.202 3.798 13 H 0.034 0.966 14 C -0.125 4.125 15 C -0.098 4.098 16 C -0.105 4.105 17 C -0.134 4.134 18 C -0.080 4.080 19 C -0.027 4.027 20 C -0.133 4.133 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.119 4.119 24 C -0.126 4.126 25 H 0.016 0.984 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.005 0.995 29 H 0.061 0.939 30 H 0.241 0.759 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.138 0.862 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.792 -0.938 -16.391 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.054 3.946 3 N -0.322 5.322 4 C -0.369 4.369 5 H 0.101 0.899 6 C -0.253 4.253 7 N -0.576 5.576 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.227 1.227 11 H -0.226 1.226 12 C 0.096 3.904 13 H 0.052 0.948 14 C -0.182 4.182 15 C -0.100 4.100 16 C -0.123 4.123 17 C -0.152 4.152 18 C -0.081 4.081 19 C -0.027 4.027 20 C -0.191 4.191 21 C -0.200 4.200 22 C -0.193 4.193 23 C -0.137 4.137 24 C -0.144 4.144 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.156 0.844 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.748 -0.985 -16.251 18.976 hybrid contribution -0.124 0.114 1.581 1.590 sum 9.624 -0.871 -14.670 17.567 Atomic orbital electron populations 1.21996 0.98913 0.99024 0.98377 1.20530 0.92520 0.84815 0.96785 1.44305 1.75858 1.10626 1.01362 1.19705 1.28026 1.05016 0.84115 0.89926 1.25380 0.99505 1.00599 0.99795 1.70341 1.32268 1.30899 1.24079 0.85385 0.78086 0.77045 0.81064 1.19603 1.22680 1.22612 1.19385 0.93410 0.91560 0.86088 0.94845 1.21755 1.01005 0.94604 1.00876 1.20759 0.95753 0.98949 0.94577 1.20957 0.93715 0.98526 0.99121 1.21288 0.99417 1.00218 0.94261 1.19984 0.95583 0.98914 0.93578 1.19520 0.92946 0.95459 0.94792 1.21854 1.01842 0.98562 0.96806 1.21951 0.96920 1.01507 0.99638 1.21875 1.01437 0.95495 1.00497 1.21072 0.93047 0.99374 1.00169 1.21175 0.99922 1.00137 0.93177 0.96451 0.95188 0.92758 0.97678 0.92123 0.94948 0.91292 0.93240 0.93254 0.88369 0.85441 0.93230 0.90901 0.92142 0.93190 0.90880 0.92624 0.92178 0.90789 0.93806 0.84410 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 9.53 71.98 0.69 -5.28 16 2 C 0.18 8.99 5.51 86.38 0.48 9.47 16 3 N -0.60 -29.41 2.13 -682.18 -1.45 -30.86 16 4 C -0.24 -12.64 8.94 84.03 0.75 -11.88 16 5 H 0.08 4.24 5.70 -2.91 -0.02 4.22 16 6 C -0.06 -3.26 5.07 84.86 0.43 -2.83 16 7 N -0.93 -53.19 8.27 21.65 0.18 -53.01 16 8 Si 0.95 45.19 29.59 68.60 2.03 47.22 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 C 0.20 8.31 3.23 44.25 0.14 8.45 16 13 H 0.03 1.39 7.94 -2.38 -0.02 1.37 16 14 C -0.13 -4.66 7.82 71.98 0.56 -4.10 16 15 C -0.10 -3.63 4.14 -19.87 -0.08 -3.71 16 16 C -0.10 -3.94 9.21 22.27 0.21 -3.73 16 17 C -0.13 -4.20 8.98 22.27 0.20 -4.00 16 18 C -0.08 -2.15 4.76 -19.87 -0.09 -2.24 16 19 C -0.03 -0.54 0.85 -52.92 -0.05 -0.59 16 20 C -0.13 -2.21 8.29 71.98 0.60 -1.62 16 21 C -0.14 -2.68 7.13 71.98 0.51 -2.17 16 22 C -0.14 -2.45 8.29 71.98 0.60 -1.85 16 23 C -0.12 -3.17 8.71 22.27 0.19 -2.97 16 24 C -0.13 -3.91 9.67 22.27 0.22 -3.70 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 2.96 6.53 -2.39 -0.02 2.94 16 28 H 0.01 0.24 7.50 -2.38 -0.02 0.23 16 29 H 0.06 3.44 5.83 -2.39 -0.01 3.43 16 30 H 0.24 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.93 7.85 -2.39 -0.02 1.91 16 33 H 0.05 1.91 6.94 -2.39 -0.02 1.89 16 34 H 0.10 4.20 7.91 -2.91 -0.02 4.18 16 35 H 0.13 3.60 5.90 -2.91 -0.02 3.59 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.95 7.39 -2.39 -0.02 0.94 16 39 H 0.05 1.03 7.51 -2.38 -0.02 1.01 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.07 7.51 -2.39 -0.02 1.05 16 42 H 0.06 1.03 7.39 -2.39 -0.02 1.02 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.14 2.89 7.10 -2.91 -0.02 2.87 16 46 H 0.13 3.51 7.99 -2.91 -0.02 3.48 16 Total: -1.00 -59.38 351.89 7.03 -52.35 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.92 Total: 17.06 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 5.35 Total: -32.76 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.27 Total: -83.87 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -59.38 7.03 -52.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615354332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.343 kcal (2) G-P(sol) polarization free energy of solvation -59.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds