Wall clock time and date at job start Mon Mar 30 2020 01:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 H 1.09002 * 109.47021 * 181.31412 * 3 2 1 5 5 C 1.50704 * 109.47095 * 301.31174 * 3 2 1 6 6 H 1.08004 * 119.99941 * 120.00187 * 5 3 2 7 7 C 1.37872 * 119.99977 * 300.00185 * 5 3 2 8 8 N 1.31509 * 120.00352 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99836 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46774 * 89.99789 * 9 7 5 11 11 H 1.48500 * 109.47076 * 209.99808 * 9 7 5 12 12 H 1.48498 * 109.47118 * 330.00086 * 9 7 5 13 13 N 1.46901 * 109.47481 * 61.31467 * 3 2 1 14 14 C 1.46895 * 110.99933 * 86.57207 * 13 3 2 15 15 C 1.50698 * 109.47014 * 175.00221 * 14 13 3 16 16 C 1.38260 * 120.00354 * 260.25513 * 15 14 13 17 17 C 1.38213 * 120.00303 * 180.27523 * 16 15 14 18 18 C 1.38255 * 119.99910 * 359.74635 * 17 16 15 19 19 C 1.38217 * 119.99903 * 359.97438 * 18 17 16 20 20 C 1.38218 * 119.99939 * 80.00341 * 15 14 13 21 21 C 1.50697 * 120.00185 * 359.97438 * 20 15 14 22 22 C 1.53005 * 109.47173 * 84.72428 * 21 20 15 23 23 C 1.52998 * 109.46598 * 65.00049 * 22 21 20 24 24 C 1.52994 * 109.47076 * 185.00224 * 22 21 20 25 25 H 1.09008 * 109.46788 * 175.70706 * 1 2 3 26 26 H 1.09002 * 109.47505 * 295.70736 * 1 2 3 27 27 H 1.08998 * 109.47239 * 55.71065 * 1 2 3 28 28 H 1.09001 * 109.47495 * 239.99690 * 2 1 3 29 29 H 1.09006 * 109.47182 * 119.99941 * 2 1 3 30 30 H 0.97004 * 120.00456 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00138 * 210.53188 * 13 3 2 32 32 H 1.09004 * 109.46987 * 55.00932 * 14 13 3 33 33 H 1.08999 * 109.47643 * 295.00471 * 14 13 3 34 34 H 1.08001 * 119.99702 * 0.04743 * 16 15 14 35 35 H 1.07996 * 120.00258 * 179.77476 * 17 16 15 36 36 H 1.08002 * 120.00305 * 180.02562 * 18 17 16 37 37 H 1.08006 * 119.99957 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46810 * 324.72778 * 21 20 15 39 39 H 1.08993 * 109.47168 * 204.72871 * 21 20 15 40 40 H 1.08997 * 109.47004 * 305.00766 * 22 21 20 41 41 H 1.09000 * 109.47032 * 180.02562 * 23 22 21 42 42 H 1.08992 * 109.47563 * 299.99868 * 23 22 21 43 43 H 1.09001 * 109.47330 * 60.00480 * 23 22 21 44 44 H 1.09004 * 109.47365 * 60.00169 * 24 22 21 45 45 H 1.09000 * 109.46780 * 180.02562 * 24 22 21 46 46 H 1.09001 * 109.47290 * 299.99788 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1297 1.4426 -0.0236 5 6 1.5112 2.1622 -1.2139 6 1 0.8926 3.0395 -1.0947 7 6 1.8171 1.7008 -2.4766 8 7 2.5707 0.6328 -2.6218 9 14 1.1610 2.5925 -3.9813 10 1 2.1299 3.6378 -4.3987 11 1 0.9724 1.6217 -5.0890 12 1 -0.1405 3.2272 -3.6522 13 7 1.5764 2.1258 1.2150 14 6 2.5044 1.9019 2.3314 15 6 2.0637 2.7144 3.5216 16 6 2.6819 3.9185 3.8039 17 6 2.2815 4.6610 4.8988 18 6 1.2593 4.2022 5.7087 19 6 0.6374 3.0013 5.4232 20 6 1.0380 2.2585 4.3281 21 6 0.3599 0.9492 4.0169 22 6 1.1635 -0.1996 4.6298 23 6 1.1378 -0.0829 6.1551 24 6 0.5458 -1.5349 4.2099 25 1 -0.3633 -1.0249 -0.0769 26 1 -0.3634 0.4458 0.9259 27 1 -0.3633 0.5789 -0.8490 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7862 0.3084 -3.5102 31 1 1.4439 3.1119 1.0471 32 1 3.5086 2.2059 2.0358 33 1 2.5077 0.8442 2.5947 34 1 3.4801 4.2771 3.1709 35 1 2.7669 5.5997 5.1213 36 1 0.9462 4.7826 6.5640 37 1 -0.1609 2.6427 6.0562 38 1 0.3034 0.8172 2.9364 39 1 -0.6464 0.9526 4.4357 40 1 2.1942 -0.1497 4.2789 41 1 1.7107 -0.9011 6.5917 42 1 1.5779 0.8683 6.4542 43 1 0.1071 -0.1329 6.5060 44 1 0.5640 -1.6179 3.1231 45 1 1.1180 -2.3532 4.6468 46 1 -0.4849 -1.5848 4.5608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618388233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:16 Heat of formation + Delta-G solvation = -6.246324 kcal Electronic energy + Delta-G solvation = -22185.568393 eV Core-core repulsion = 19266.656858 eV Total energy + Delta-G solvation = -2918.911535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59109 -36.21658 -35.93896 -33.13773 -31.30872 -31.06957 -29.76632 -27.02829 -26.66629 -26.04993 -24.15919 -23.06386 -21.70738 -20.72268 -19.61651 -18.97114 -16.64693 -15.96292 -15.61049 -14.96538 -14.77261 -14.30539 -14.15368 -13.83490 -13.50856 -13.41079 -13.18978 -12.65724 -12.36155 -12.20402 -12.10278 -12.00878 -11.83293 -11.62508 -11.48692 -11.14692 -10.94577 -10.86944 -10.69058 -10.57705 -10.39028 -10.35927 -10.25436 -9.97287 -9.66160 -9.37006 -8.79368 -8.54773 -8.45623 -8.26550 -7.21060 -6.01236 -4.06380 1.62449 1.64504 3.29342 3.36641 3.40234 3.99732 4.41430 4.95738 5.04127 5.13600 5.15471 5.20005 5.24066 5.30126 5.42939 5.56744 5.67865 5.72117 5.75445 5.89785 5.92869 5.95365 6.07585 6.11487 6.18744 6.22578 6.26602 6.36601 6.45611 6.54421 6.57414 6.62084 6.71769 6.72823 6.79157 6.89205 7.07580 7.23894 7.28486 7.34158 7.51576 7.76947 7.80796 7.86085 8.27498 8.40447 8.68145 9.03074 9.58367 11.04585 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.005260 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.844011 B = 5321.997826 C = 6341.375255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.094 3.906 15 C -0.070 4.070 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.051 4.051 21 C -0.086 4.086 22 C -0.089 4.089 23 C -0.147 4.147 24 C -0.147 4.147 25 H 0.012 0.988 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.010 0.990 30 H 0.260 0.740 31 H 0.331 0.669 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 1.176 15.677 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.139 4.139 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.035 4.035 15 C -0.070 4.070 16 C -0.134 4.134 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.052 4.052 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.205 4.205 24 C -0.204 4.204 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.361 0.521 15.693 15.878 hybrid contribution 0.489 1.126 -1.092 1.643 sum -1.872 1.647 14.601 14.813 Atomic orbital electron populations 1.21468 0.97532 0.97332 1.01332 1.21405 0.94986 0.98184 0.99293 1.19161 0.93156 0.91581 0.85271 0.98261 1.21186 1.31571 1.11899 0.90347 0.92361 1.24867 0.95093 0.94982 0.98821 1.69884 1.37194 1.22966 1.22695 0.86603 0.79357 0.79409 0.82673 1.20868 1.21267 1.19879 1.60758 1.46831 1.16444 1.06663 1.20964 0.94081 0.98763 0.89716 1.19958 0.95637 0.95007 0.96445 1.21089 1.00203 0.94667 0.97404 1.21001 0.98150 0.99772 0.95934 1.21009 0.97218 0.96622 0.99800 1.21003 1.00425 0.95205 0.97508 1.19713 0.95272 0.96330 0.93849 1.20831 0.97262 0.90258 1.03978 1.21050 1.00022 0.94537 0.95125 1.21901 1.01235 1.01458 0.95859 1.21832 1.00264 0.96266 1.02026 0.96874 0.93950 0.92496 0.89723 0.97170 0.93001 0.85177 0.95739 0.90740 0.86514 0.86774 0.86853 0.86719 0.87733 0.92024 0.91211 0.93326 0.92526 0.93087 0.91952 0.93159 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.53 37.15 0.35 -2.25 16 2 C -0.10 -2.35 5.59 -26.74 -0.15 -2.50 16 3 C 0.22 5.21 2.31 -68.86 -0.16 5.05 16 4 H 0.00 -0.01 7.69 -51.93 -0.40 -0.41 16 5 C -0.51 -13.48 7.19 -34.44 -0.25 -13.73 16 6 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.85 11.33 55.43 0.63 -24.22 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.68 -13.76 5.03 -109.22 -0.55 -14.31 16 14 C 0.09 1.67 4.83 -4.98 -0.02 1.65 16 15 C -0.07 -1.10 5.34 -104.62 -0.56 -1.66 16 16 C -0.11 -1.67 9.67 -39.58 -0.38 -2.06 16 17 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 18 C -0.13 -1.58 10.05 -39.58 -0.40 -1.97 16 19 C -0.12 -1.60 8.36 -39.58 -0.33 -1.93 16 20 C -0.05 -0.74 4.56 -104.62 -0.48 -1.22 16 21 C -0.09 -1.22 4.16 -27.88 -0.12 -1.33 16 22 C -0.09 -1.13 2.71 -90.62 -0.25 -1.38 16 23 C -0.15 -1.63 8.84 37.16 0.33 -1.30 16 24 C -0.15 -1.78 9.19 37.15 0.34 -1.44 16 25 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 26 H 0.04 0.87 6.83 -51.93 -0.35 0.51 16 27 H 0.06 1.36 7.02 -51.93 -0.36 0.99 16 28 H 0.08 2.24 6.11 -51.93 -0.32 1.92 16 29 H 0.01 0.21 7.63 -51.93 -0.40 -0.18 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.33 6.89 8.11 -39.29 -0.32 6.57 16 32 H 0.02 0.46 7.79 -51.93 -0.40 0.05 16 33 H 0.07 1.34 5.37 -51.93 -0.28 1.06 16 34 H 0.12 1.61 8.04 -52.49 -0.42 1.19 16 35 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 38 H 0.10 1.75 5.67 -51.93 -0.29 1.45 16 39 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 40 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.65 6.52 -51.93 -0.34 0.31 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -26.84 355.46 -10.14 -36.98 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.00 Total: 6.70 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -2.56 Total: -26.52 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.08 Total: -38.53 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.84 -10.14 -36.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618388233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.733 kcal (2) G-P(sol) polarization free energy of solvation -26.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds