Wall clock time and date at job start Mon Mar 30 2020 01:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 H 1.09002 * 109.47021 * 181.31412 * 3 2 1 5 5 C 1.50704 * 109.47095 * 301.31174 * 3 2 1 6 6 H 1.08004 * 119.99941 * 120.00187 * 5 3 2 7 7 C 1.37872 * 119.99977 * 300.00185 * 5 3 2 8 8 N 1.31509 * 120.00352 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99836 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46774 * 89.99789 * 9 7 5 11 11 H 1.48500 * 109.47076 * 209.99808 * 9 7 5 12 12 H 1.48498 * 109.47118 * 330.00086 * 9 7 5 13 13 N 1.46901 * 109.47481 * 61.31467 * 3 2 1 14 14 C 1.46895 * 110.99933 * 86.57207 * 13 3 2 15 15 C 1.50698 * 109.47014 * 175.00221 * 14 13 3 16 16 C 1.38260 * 120.00354 * 260.25513 * 15 14 13 17 17 C 1.38213 * 120.00303 * 180.27523 * 16 15 14 18 18 C 1.38255 * 119.99910 * 359.74635 * 17 16 15 19 19 C 1.38217 * 119.99903 * 359.97438 * 18 17 16 20 20 C 1.38218 * 119.99939 * 80.00341 * 15 14 13 21 21 C 1.50697 * 120.00185 * 359.97438 * 20 15 14 22 22 C 1.53005 * 109.47173 * 84.72428 * 21 20 15 23 23 C 1.52998 * 109.46598 * 65.00049 * 22 21 20 24 24 C 1.52994 * 109.47076 * 185.00224 * 22 21 20 25 25 H 1.09008 * 109.46788 * 175.70706 * 1 2 3 26 26 H 1.09002 * 109.47505 * 295.70736 * 1 2 3 27 27 H 1.08998 * 109.47239 * 55.71065 * 1 2 3 28 28 H 1.09001 * 109.47495 * 239.99690 * 2 1 3 29 29 H 1.09006 * 109.47182 * 119.99941 * 2 1 3 30 30 H 0.97004 * 120.00456 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00138 * 210.53188 * 13 3 2 32 32 H 1.09004 * 109.46987 * 55.00932 * 14 13 3 33 33 H 1.08999 * 109.47643 * 295.00471 * 14 13 3 34 34 H 1.08001 * 119.99702 * 0.04743 * 16 15 14 35 35 H 1.07996 * 120.00258 * 179.77476 * 17 16 15 36 36 H 1.08002 * 120.00305 * 180.02562 * 18 17 16 37 37 H 1.08006 * 119.99957 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46810 * 324.72778 * 21 20 15 39 39 H 1.08993 * 109.47168 * 204.72871 * 21 20 15 40 40 H 1.08997 * 109.47004 * 305.00766 * 22 21 20 41 41 H 1.09000 * 109.47032 * 180.02562 * 23 22 21 42 42 H 1.08992 * 109.47563 * 299.99868 * 23 22 21 43 43 H 1.09001 * 109.47330 * 60.00480 * 23 22 21 44 44 H 1.09004 * 109.47365 * 60.00169 * 24 22 21 45 45 H 1.09000 * 109.46780 * 180.02562 * 24 22 21 46 46 H 1.09001 * 109.47290 * 299.99788 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1297 1.4426 -0.0236 5 6 1.5112 2.1622 -1.2139 6 1 0.8926 3.0395 -1.0947 7 6 1.8171 1.7008 -2.4766 8 7 2.5707 0.6328 -2.6218 9 14 1.1610 2.5925 -3.9813 10 1 2.1299 3.6378 -4.3987 11 1 0.9724 1.6217 -5.0890 12 1 -0.1405 3.2272 -3.6522 13 7 1.5764 2.1258 1.2150 14 6 2.5044 1.9019 2.3314 15 6 2.0637 2.7144 3.5216 16 6 2.6819 3.9185 3.8039 17 6 2.2815 4.6610 4.8988 18 6 1.2593 4.2022 5.7087 19 6 0.6374 3.0013 5.4232 20 6 1.0380 2.2585 4.3281 21 6 0.3599 0.9492 4.0169 22 6 1.1635 -0.1996 4.6298 23 6 1.1378 -0.0829 6.1551 24 6 0.5458 -1.5349 4.2099 25 1 -0.3633 -1.0249 -0.0769 26 1 -0.3634 0.4458 0.9259 27 1 -0.3633 0.5789 -0.8490 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.7862 0.3084 -3.5102 31 1 1.4439 3.1119 1.0471 32 1 3.5086 2.2059 2.0358 33 1 2.5077 0.8442 2.5947 34 1 3.4801 4.2771 3.1709 35 1 2.7669 5.5997 5.1213 36 1 0.9462 4.7826 6.5640 37 1 -0.1609 2.6427 6.0562 38 1 0.3034 0.8172 2.9364 39 1 -0.6464 0.9526 4.4357 40 1 2.1942 -0.1497 4.2789 41 1 1.7107 -0.9011 6.5917 42 1 1.5779 0.8683 6.4542 43 1 0.1071 -0.1329 6.5060 44 1 0.5640 -1.6179 3.1231 45 1 1.1180 -2.3532 4.6468 46 1 -0.4849 -1.5848 4.5608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618388233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:15 Heat of formation + Delta-G solvation = -18.223346 kcal Electronic energy + Delta-G solvation = -22186.087756 eV Core-core repulsion = 19266.656858 eV Total energy + Delta-G solvation = -2919.430898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71043 -37.95318 -36.98443 -34.83572 -33.07278 -32.14451 -31.27275 -28.40404 -27.92550 -27.26342 -25.75579 -24.89190 -22.79766 -21.89549 -20.87648 -20.65128 -18.45346 -17.17307 -17.01397 -16.64388 -16.01774 -15.58328 -15.48868 -15.20153 -15.09085 -14.84172 -14.38108 -14.08071 -13.94635 -13.49190 -13.36758 -13.30020 -13.00974 -12.93189 -12.82861 -12.71375 -12.59953 -12.40004 -12.18362 -11.99474 -11.81079 -11.67688 -11.54051 -11.35907 -11.26347 -11.21373 -10.78842 -10.52570 -9.63786 -9.37820 -8.96103 -8.08720 -6.20634 0.53862 0.59348 1.41046 1.43079 1.52642 2.42826 2.92073 3.20185 3.77667 3.91466 4.01266 4.09282 4.14489 4.22333 4.31017 4.40753 4.52778 4.63490 4.64812 4.77494 4.81230 4.82066 4.86898 4.88687 4.95090 4.97423 5.05635 5.13992 5.18089 5.22336 5.28948 5.32483 5.42323 5.48572 5.53181 5.57045 5.58727 5.68903 5.69672 5.73769 5.85962 5.90718 5.99539 6.23736 6.29488 6.50489 6.80205 7.03408 7.47959 8.96191 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.005260 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.844011 B = 5321.997826 C = 6341.375255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.093 4.093 3 C 0.223 3.777 4 H -0.039 1.039 5 C -0.522 4.522 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.664 5.664 14 C 0.103 3.897 15 C -0.092 4.092 16 C -0.129 4.129 17 C -0.131 4.131 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.059 4.059 21 C -0.082 4.082 22 C -0.087 4.087 23 C -0.140 4.140 24 C -0.144 4.144 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.019 0.981 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.009 0.991 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.060 0.940 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 2.121 17.752 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.131 4.131 3 C 0.115 3.885 4 H -0.022 1.022 5 C -0.560 4.560 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.294 5.294 14 C -0.025 4.025 15 C -0.092 4.092 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.060 4.060 21 C -0.119 4.119 22 C -0.105 4.105 23 C -0.198 4.198 24 C -0.201 4.201 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.028 0.972 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.817 1.472 17.782 18.247 hybrid contribution 0.974 0.853 -1.651 2.098 sum -2.844 2.325 16.132 16.545 Atomic orbital electron populations 1.21307 0.95907 0.98195 1.00845 1.21243 0.96272 0.97405 0.98204 1.18946 0.90709 0.92389 0.86493 1.02190 1.21429 1.31354 1.11881 0.91346 0.92658 1.25590 0.95336 0.95650 1.01488 1.70020 1.38186 1.24169 1.23172 0.85642 0.78869 0.78296 0.79334 1.20470 1.21052 1.19325 1.60682 1.47219 1.15816 1.05725 1.20835 0.92791 0.99028 0.89886 1.19774 0.97390 0.95747 0.96302 1.21200 1.00449 0.94643 0.98443 1.21301 0.98229 1.00362 0.95018 1.21416 0.96102 0.96304 1.00143 1.21270 1.00774 0.95186 0.96938 1.19805 0.95019 0.96712 0.94436 1.20752 0.98197 0.90753 1.02187 1.21008 0.98633 0.94370 0.96525 1.21831 1.02250 1.01590 0.94079 1.21805 1.01251 0.96333 1.00715 0.95026 0.92784 0.94712 0.92702 0.96242 0.93065 0.85524 0.97246 0.91307 0.86781 0.84330 0.83657 0.84447 0.90739 0.90670 0.93245 0.92503 0.92908 0.91694 0.94030 0.92091 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.53 71.98 0.69 -3.94 16 2 C -0.09 -4.49 5.59 30.59 0.17 -4.32 16 3 C 0.22 11.23 2.31 44.17 0.10 11.34 16 4 H -0.04 -2.25 7.69 -2.39 -0.02 -2.27 16 5 C -0.52 -28.19 7.19 25.60 0.18 -28.01 16 6 H 0.06 2.97 7.59 -2.91 -0.02 2.94 16 7 C 0.02 1.02 5.30 84.65 0.45 1.47 16 8 N -0.92 -52.65 11.33 21.44 0.24 -52.40 16 9 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 N -0.66 -27.99 5.03 -499.46 -2.51 -30.50 16 14 C 0.10 3.86 4.83 85.56 0.41 4.27 16 15 C -0.09 -2.89 5.34 -19.86 -0.11 -3.00 16 16 C -0.13 -3.68 9.67 22.27 0.22 -3.46 16 17 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 18 C -0.12 -2.55 10.05 22.27 0.22 -2.33 16 19 C -0.12 -2.84 8.36 22.27 0.19 -2.66 16 20 C -0.06 -1.65 4.56 -19.87 -0.09 -1.74 16 21 C -0.08 -2.23 4.16 29.85 0.12 -2.10 16 22 C -0.09 -2.14 2.71 -10.79 -0.03 -2.17 16 23 C -0.14 -2.78 8.84 71.98 0.64 -2.14 16 24 C -0.14 -3.35 9.19 71.98 0.66 -2.68 16 25 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.05 2.22 6.83 -2.39 -0.02 2.20 16 27 H 0.03 1.66 7.02 -2.39 -0.02 1.64 16 28 H 0.05 3.01 6.11 -2.39 -0.01 2.99 16 29 H 0.02 0.87 7.63 -2.38 -0.02 0.85 16 30 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.33 14.06 8.11 -89.70 -0.73 13.33 16 32 H 0.01 0.37 7.79 -2.38 -0.02 0.35 16 33 H 0.07 2.61 5.37 -2.39 -0.01 2.60 16 34 H 0.11 3.20 8.04 -2.91 -0.02 3.18 16 35 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.07 2.49 5.67 -2.39 -0.01 2.48 16 39 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 40 H 0.05 1.41 6.80 -2.39 -0.02 1.39 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.05 1.09 6.52 -2.39 -0.02 1.07 16 43 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -58.75 355.46 4.02 -54.73 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.21 Total: 26.86 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 4.05 Total: -44.30 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -2.27 Total: -82.90 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -58.75 4.02 -54.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618388233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.508 kcal (2) G-P(sol) polarization free energy of solvation -58.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds