Wall clock time and date at job start Mon Mar 30 2020 01:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48499 * 109.47132 * 270.00372 * 3 2 1 5 5 H 1.48503 * 109.46846 * 30.00130 * 3 2 1 6 6 H 1.48494 * 109.47048 * 149.99874 * 3 2 1 7 7 C 1.40133 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00023 * 179.97438 * 7 2 1 9 9 C 1.41287 * 120.00166 * 359.97438 * 7 2 1 10 10 O 1.21874 * 120.00057 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00096 * 180.02562 * 9 7 2 12 12 C 1.39499 * 119.99871 * 184.74969 * 11 9 7 13 13 C 1.34945 * 122.75085 * 328.39843 * 12 11 9 14 14 S 1.75871 * 109.48706 * 179.79884 * 13 12 11 15 15 C 1.75819 * 91.11379 * 0.29262 * 14 13 12 16 16 S 1.76199 * 125.04504 * 179.97438 * 15 14 13 17 17 N 1.65601 * 107.21907 * 269.69707 * 16 15 14 18 18 O 1.42100 * 106.40189 * 23.23615 * 16 15 14 19 19 O 1.42100 * 106.40444 * 156.15617 * 16 15 14 20 20 C 1.33304 * 109.91075 * 359.70511 * 15 14 13 21 21 H 0.96997 * 119.99697 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99546 * 4.73968 * 11 9 7 23 23 H 1.07998 * 125.26064 * 0.02562 * 13 12 11 24 24 H 0.97004 * 120.00262 * 179.97438 * 17 16 15 25 25 H 0.97001 * 120.00115 * 0.02562 * 17 16 15 26 26 H 1.08003 * 122.50798 * 180.24371 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4378 2.6526 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.3006 -2.4372 -0.0005 10 8 0.0818 -2.4372 -0.0005 11 7 1.9744 -3.6044 -0.0005 12 6 1.2805 -4.8104 -0.1006 13 6 0.0390 -4.9820 0.3997 14 16 -0.5025 -6.6235 0.0754 15 6 1.0144 -7.0016 -0.7291 16 16 1.4191 -8.5601 -1.4447 17 7 2.1523 -9.4646 -0.2672 18 8 0.1845 -9.2018 -1.7332 19 8 2.4107 -8.3039 -2.4298 20 6 1.8106 -5.9325 -0.7224 21 1 -0.4849 0.8400 0.0004 22 1 2.9420 -3.6058 0.0689 23 1 -0.5350 -4.2268 0.9160 24 1 2.4535 -10.3654 -0.4645 25 1 2.2800 -9.0940 0.6201 26 1 2.7945 -5.9388 -1.1678 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643938110.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:23 Heat of formation + Delta-G solvation = -109.748701 kcal Electronic energy + Delta-G solvation = -16568.672304 eV Core-core repulsion = 13478.878008 eV Total energy + Delta-G solvation = -3089.794296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.007 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.66661 -38.35353 -38.00979 -36.96720 -34.92230 -34.11673 -34.01776 -30.53120 -28.59089 -25.57416 -22.81146 -20.74827 -20.36350 -19.93376 -19.28988 -18.37551 -17.78160 -17.35965 -16.91903 -16.60638 -16.16164 -15.83423 -15.10444 -14.74093 -14.18532 -14.04415 -13.81771 -13.28196 -13.22898 -13.21405 -13.13103 -12.83750 -12.71983 -12.56522 -12.10334 -12.03596 -11.34549 -11.21391 -10.90656 -10.10186 -9.83442 -8.81434 -8.42242 -7.05751 -0.72239 -0.48293 0.42989 0.79179 1.32337 1.39494 1.48130 1.56346 2.15192 2.19833 2.39937 2.62526 3.02962 3.60299 3.75111 4.06452 4.32694 4.53479 4.92778 5.10613 5.20108 5.30667 5.85297 6.11423 6.20403 6.38262 6.70750 7.35798 8.33729 8.52359 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.044462 B = 0.004312 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.601676 B = 6491.422419 C = 6865.426322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.032 3.968 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.562 4.562 8 H 0.093 0.907 9 C 0.529 3.471 10 O -0.615 6.615 11 N -0.682 5.682 12 C 0.106 3.894 13 C -0.215 4.215 14 S 0.235 5.765 15 C -0.790 4.790 16 S 2.763 3.237 17 N -1.228 6.228 18 O -0.988 6.988 19 O -0.986 6.986 20 C -0.001 4.001 21 H 0.279 0.721 22 H 0.410 0.590 23 H 0.155 0.845 24 H 0.433 0.567 25 H 0.431 0.569 26 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -14.365 2.451 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.597 4.597 8 H 0.111 0.889 9 C 0.339 3.661 10 O -0.502 6.502 11 N -0.329 5.329 12 C -0.002 4.002 13 C -0.357 4.357 14 S 0.499 5.501 15 C -0.991 4.991 16 S 2.847 3.153 17 N -0.911 5.911 18 O -0.977 6.977 19 O -0.975 6.975 20 C -0.041 4.041 21 H 0.090 0.910 22 H 0.246 0.754 23 H 0.173 0.827 24 H 0.267 0.733 25 H 0.261 0.739 26 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.252 -15.154 1.760 15.838 hybrid contribution 1.734 2.149 0.542 2.814 sum 5.986 -13.006 2.302 14.501 Atomic orbital electron populations 1.70156 1.09690 1.29562 1.33341 1.27025 0.95494 1.05195 0.90941 0.84957 0.78893 0.74639 0.79507 1.18680 1.19691 1.16896 1.20467 0.95725 0.90453 1.53044 0.88856 1.17323 0.87333 0.83724 0.77756 1.90609 1.15498 1.86742 1.57390 1.43422 1.10122 1.02720 1.76628 1.17384 0.94222 0.88728 0.99822 1.26475 1.01233 1.00965 1.07073 1.83631 1.12167 1.02952 1.51327 1.35231 1.09017 1.25598 1.29256 0.99694 0.72840 0.70910 0.71858 1.52566 1.80387 1.29664 1.28453 1.93576 1.46725 1.74015 1.83418 1.93571 1.60817 1.85176 1.57940 1.19872 1.01400 0.89442 0.93360 0.91047 0.75394 0.82738 0.73334 0.73862 0.80377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.36 11.72 21.85 0.26 -46.11 15 2 C 0.03 1.69 5.50 85.33 0.47 2.15 15 3 Si 1.00 38.36 29.56 68.60 2.03 40.39 15 4 H -0.26 -9.68 7.11 99.48 0.71 -8.98 15 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 15 6 H -0.25 -8.68 7.11 99.48 0.71 -7.97 15 7 C -0.56 -29.89 9.29 23.48 0.22 -29.67 15 8 H 0.09 4.36 7.85 -2.91 -0.02 4.34 15 9 C 0.53 29.14 7.45 84.99 0.63 29.77 15 10 O -0.61 -38.76 12.44 -4.91 -0.06 -38.82 15 11 N -0.68 -29.54 5.38 -314.95 -1.69 -31.23 15 12 C 0.11 4.18 6.33 37.30 0.24 4.41 15 13 C -0.22 -8.77 9.86 67.06 0.66 -8.11 15 14 S 0.23 7.21 23.19 -56.49 -1.31 5.90 15 15 C -0.79 -21.98 6.53 66.70 0.44 -21.55 15 16 S 2.76 63.28 6.42 -56.49 -0.36 62.92 15 17 N -1.23 -14.97 9.55 37.02 0.35 -14.61 15 18 O -0.99 -28.41 17.90 -128.00 -2.29 -30.70 15 19 O -0.99 -28.15 17.78 -128.00 -2.28 -30.42 15 20 C 0.00 -0.04 9.81 21.29 0.21 0.17 15 21 H 0.28 14.61 8.29 -92.71 -0.77 13.85 15 22 H 0.41 14.51 8.78 -92.71 -0.81 13.70 15 23 H 0.16 7.41 6.49 -2.91 -0.02 7.39 15 24 H 0.43 3.23 8.96 -96.74 -0.87 2.36 15 25 H 0.43 3.39 8.92 -96.74 -0.86 2.53 15 26 H 0.18 4.44 8.05 -2.91 -0.02 4.42 15 Total: -1.00 -79.51 267.36 -3.75 -83.27 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -1.26 Total: 22.24 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 2.86 Total: -22.81 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -1.08 Total: -91.95 kcal Atomic # 8 Polarization: -95.32 SS G_CDS: -4.63 Total: -99.95 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Atomic # 16 Polarization: 70.49 SS G_CDS: -1.67 Total: 68.82 kcal Total: -79.51 -3.75 -83.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643938110.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.483 kcal (2) G-P(sol) polarization free energy of solvation -79.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds