Wall clock time and date at job start Mon Mar 30 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46895 * 109.47299 * 2 1 4 4 C 1.46900 * 110.99933 * 61.60141 * 3 2 1 5 5 C 1.50703 * 109.47128 * 67.76073 * 4 3 2 6 6 H 1.08005 * 119.99857 * 2.06858 * 5 4 3 7 7 C 1.37877 * 120.00120 * 182.06526 * 5 4 3 8 8 N 1.31514 * 119.99928 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99913 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47279 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47313 * 120.00331 * 9 7 5 12 12 H 1.48507 * 109.46900 * 240.00128 * 9 7 5 13 13 C 1.46904 * 111.00029 * 297.64746 * 3 2 1 14 14 C 1.50699 * 109.47216 * 288.65049 * 13 3 2 15 15 C 1.38258 * 119.99841 * 101.79835 * 14 13 3 16 16 C 1.38216 * 119.99764 * 179.97438 * 15 14 13 17 17 C 1.38253 * 120.00225 * 0.02562 * 16 15 14 18 18 C 1.38221 * 119.99789 * 359.70025 * 17 16 15 19 19 C 1.38207 * 120.00039 * 281.77868 * 14 13 3 20 20 C 1.50707 * 120.00050 * 359.97438 * 19 14 13 21 21 C 1.53004 * 109.46569 * 86.36444 * 20 19 14 22 22 C 1.52993 * 109.47639 * 64.99766 * 21 20 19 23 23 C 1.53000 * 109.46708 * 185.00488 * 21 20 19 24 24 H 1.09003 * 109.47054 * 64.98200 * 1 2 3 25 25 H 1.09000 * 109.47527 * 184.98505 * 1 2 3 26 26 H 1.09005 * 109.47155 * 304.98175 * 1 2 3 27 27 H 1.08998 * 109.46967 * 239.99985 * 2 1 3 28 28 H 1.08996 * 109.47050 * 120.00046 * 2 1 3 29 29 H 1.09004 * 109.46850 * 187.75804 * 4 3 2 30 30 H 1.08992 * 109.47655 * 307.75728 * 4 3 2 31 31 H 0.96997 * 119.99857 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46989 * 168.64488 * 13 3 2 33 33 H 1.09002 * 109.46561 * 48.65324 * 13 3 2 34 34 H 1.07995 * 119.99829 * 359.97438 * 15 14 13 35 35 H 1.07998 * 119.99744 * 180.02562 * 16 15 14 36 36 H 1.07993 * 120.00297 * 179.97438 * 17 16 15 37 37 H 1.08000 * 119.99716 * 180.30057 * 18 17 16 38 38 H 1.08992 * 109.47210 * 206.35692 * 20 19 14 39 39 H 1.08997 * 109.47300 * 326.36702 * 20 19 14 40 40 H 1.09002 * 109.46634 * 304.99541 * 21 20 19 41 41 H 1.08994 * 109.47412 * 179.97438 * 22 21 20 42 42 H 1.08993 * 109.47249 * 300.00076 * 22 21 20 43 43 H 1.09001 * 109.46894 * 59.99812 * 22 21 20 44 44 H 1.08996 * 109.47497 * 59.99669 * 23 21 20 45 45 H 1.09003 * 109.47057 * 180.02562 * 23 21 20 46 46 H 1.09002 * 109.46799 * 299.98951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5802 2.0987 1.2064 5 6 2.2669 1.5143 2.4139 6 1 2.9854 0.7171 2.2935 7 6 1.9778 1.9975 3.6725 8 7 1.1033 2.9687 3.8192 9 14 2.8284 1.2727 5.1693 10 1 3.7613 0.2008 4.7379 11 1 3.5894 2.3378 5.8705 12 1 1.8112 0.7035 6.0895 13 6 1.5952 2.0934 -1.2149 14 6 2.3616 1.5635 -2.3992 15 6 1.7614 0.6708 -3.2678 16 6 2.4642 0.1852 -4.3543 17 6 3.7675 0.5915 -4.5723 18 6 4.3657 1.4883 -3.7071 19 6 3.6644 1.9700 -2.6173 20 6 4.3184 2.9438 -1.6711 21 6 4.9395 2.1786 -0.5008 22 6 6.0741 1.2911 -1.0164 23 6 5.4938 3.1727 0.5217 24 1 -0.3633 0.4346 -0.9313 25 1 -0.3634 -1.0237 0.0893 26 1 -0.3634 0.5892 0.8420 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8370 3.1543 1.1178 30 1 0.5008 1.9954 1.3168 31 1 0.9002 3.3089 4.7045 32 1 1.7927 3.1594 -1.1016 33 1 0.5281 1.9365 -1.3728 34 1 0.7434 0.3531 -3.0973 35 1 1.9952 -0.5118 -5.0330 36 1 4.3168 0.2118 -5.4210 37 1 5.3822 1.8095 -3.8802 38 1 5.0965 3.4957 -2.1982 39 1 3.5707 3.6411 -1.2933 40 1 4.1786 1.5575 -0.0281 41 1 6.5169 0.7464 -0.1826 42 1 5.6792 0.5830 -1.7447 43 1 6.8350 1.9122 -1.4891 44 1 4.6854 3.8049 0.8890 45 1 5.9367 2.6276 1.3552 46 1 6.2547 3.7937 0.0490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653500405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:19 Heat of formation + Delta-G solvation = -2.368171 kcal Electronic energy + Delta-G solvation = -22740.122428 eV Core-core repulsion = 19821.379063 eV Total energy + Delta-G solvation = -2918.743366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83976 -38.42511 -36.83617 -34.74088 -32.85692 -31.99702 -30.94890 -28.86148 -27.84989 -27.24685 -26.02450 -24.90557 -22.85412 -22.18940 -21.05154 -20.06758 -18.32187 -17.15777 -17.11132 -16.70555 -16.17322 -15.92069 -15.61119 -15.22557 -14.96809 -14.63802 -14.55537 -14.16372 -13.88312 -13.45373 -13.23632 -13.17258 -13.07696 -12.97843 -12.84012 -12.72040 -12.55066 -12.49231 -12.44061 -12.03204 -11.93687 -11.70214 -11.51857 -11.49058 -11.26834 -11.10530 -11.06502 -10.54659 -9.56534 -9.32609 -8.75501 -8.13524 -6.20387 0.59627 0.64158 1.39592 1.41713 1.53453 2.42917 2.94725 3.19806 3.56522 3.93920 4.05596 4.14663 4.23825 4.32470 4.33724 4.37926 4.39915 4.53084 4.58263 4.63470 4.68939 4.75709 4.86774 4.91062 4.93108 4.99973 5.04332 5.07005 5.12164 5.18024 5.20865 5.27337 5.30041 5.33813 5.42547 5.54574 5.57187 5.62928 5.73446 5.75048 5.75963 5.94102 6.09431 6.15377 6.28196 6.45991 6.72445 6.96207 7.48041 8.96951 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.006317 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.627821 B = 4431.341885 C = 5329.582632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 N -0.516 5.516 4 C 0.208 3.792 5 C -0.499 4.499 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.089 3.911 14 C -0.081 4.081 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.065 4.065 20 C -0.063 4.063 21 C -0.104 4.104 22 C -0.134 4.134 23 C -0.132 4.132 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.057 0.943 29 H -0.004 1.004 30 H -0.024 1.024 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.029 0.971 45 H 0.041 0.959 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 -4.478 -15.858 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.064 4.064 3 N -0.239 5.239 4 C 0.082 3.918 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.576 5.576 9 Si 0.780 3.220 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.039 4.039 14 C -0.081 4.081 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.142 4.142 18 C -0.141 4.141 19 C -0.065 4.065 20 C -0.100 4.100 21 C -0.122 4.122 22 C -0.191 4.191 23 C -0.189 4.189 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.014 0.986 30 H -0.006 1.006 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.147 -4.379 -15.706 17.426 hybrid contribution -0.963 0.161 1.408 1.714 sum 5.184 -4.219 -14.298 15.783 Atomic orbital electron populations 1.22273 0.98552 1.02031 1.00900 1.21919 0.92748 0.90649 1.01115 1.62225 1.58533 1.02123 1.00988 1.19398 0.92751 0.92365 0.87253 1.21363 1.22745 1.18523 0.91117 0.92354 1.25723 0.96044 0.95609 1.01845 1.70081 1.35436 1.28577 1.23553 0.85553 0.78481 0.78458 0.79478 1.18909 1.20834 1.20816 1.21009 0.96082 0.97618 0.89159 1.19673 0.94713 0.98209 0.95524 1.21152 1.00266 0.97272 0.95369 1.21306 0.95151 1.00675 0.97699 1.21381 0.95329 0.97602 0.99854 1.21207 1.00181 0.98307 0.94413 1.19793 0.93224 0.97968 0.95541 1.20507 0.98754 0.95873 0.94850 1.21256 0.98668 0.97395 0.94907 1.21761 0.97683 0.99286 1.00348 1.21661 0.99784 0.98911 0.98579 0.92322 0.91310 0.94581 0.90913 0.92477 0.98592 1.00613 0.93075 0.92093 0.94569 0.86165 0.84205 0.83878 0.84866 0.90839 0.93214 0.88937 0.93886 0.92879 0.92136 0.95127 0.93974 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.27 9.27 71.98 0.67 -5.60 16 2 C 0.06 2.41 5.74 86.30 0.50 2.91 16 3 N -0.52 -21.18 2.24 -905.38 -2.03 -23.21 16 4 C 0.21 10.68 4.53 85.56 0.39 11.07 16 5 C -0.50 -27.43 8.47 25.60 0.22 -27.21 16 6 H 0.06 3.20 7.31 -2.91 -0.02 3.18 16 7 C 0.01 0.29 5.46 84.65 0.46 0.76 16 8 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.09 3.20 4.32 85.56 0.37 3.57 16 14 C -0.08 -2.48 4.72 -19.87 -0.09 -2.57 16 15 C -0.12 -3.21 8.90 22.27 0.20 -3.01 16 16 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 17 C -0.12 -2.57 10.05 22.27 0.22 -2.34 16 18 C -0.12 -2.91 8.27 22.27 0.18 -2.72 16 19 C -0.06 -1.87 4.59 -19.86 -0.09 -1.96 16 20 C -0.06 -1.89 4.36 29.85 0.13 -1.76 16 21 C -0.10 -3.42 2.89 -10.79 -0.03 -3.45 16 22 C -0.13 -3.67 8.83 71.98 0.64 -3.04 16 23 C -0.13 -4.47 9.19 71.98 0.66 -3.81 16 24 H 0.06 1.85 6.48 -2.39 -0.02 1.83 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.04 1.51 6.04 -2.38 -0.01 1.49 16 27 H 0.07 2.47 6.80 -2.39 -0.02 2.45 16 28 H 0.06 2.39 6.98 -2.39 -0.02 2.37 16 29 H 0.00 -0.23 7.83 -2.39 -0.02 -0.25 16 30 H -0.02 -1.32 5.88 -2.39 -0.01 -1.33 16 31 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.06 2.34 6.19 -2.39 -0.01 2.32 16 33 H 0.04 1.28 5.81 -2.39 -0.01 1.26 16 34 H 0.12 2.94 8.02 -2.91 -0.02 2.92 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 39 H 0.05 1.70 6.31 -2.39 -0.02 1.68 16 40 H 0.09 3.73 5.60 -2.39 -0.01 3.72 16 41 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.05 1.44 6.46 -2.39 -0.02 1.42 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -60.88 351.13 5.85 -55.03 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.93 Total: 19.07 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 4.64 Total: -41.80 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.74 Total: -78.83 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.88 5.85 -55.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653500405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.661 kcal (2) G-P(sol) polarization free energy of solvation -60.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds