Wall clock time and date at job start Mon Mar 30 2020 01:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 H 1.08997 * 109.47484 * 55.61604 * 3 2 1 5 5 C 1.50701 * 109.46965 * 175.61758 * 3 2 1 6 6 H 1.07999 * 119.99998 * 119.99937 * 5 3 2 7 7 C 1.37878 * 119.99943 * 299.99928 * 5 3 2 8 8 N 1.31515 * 119.99961 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00222 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47246 * 89.99933 * 9 7 5 11 11 H 1.48496 * 109.47574 * 210.00185 * 9 7 5 12 12 H 1.48506 * 109.46841 * 330.00557 * 9 7 5 13 13 N 1.46901 * 109.47062 * 295.61560 * 3 2 1 14 14 C 1.46904 * 110.99774 * 161.97616 * 13 3 2 15 15 H 1.08993 * 109.47503 * 24.89348 * 14 13 3 16 16 C 1.52995 * 109.46798 * 264.89113 * 14 13 3 17 17 C 1.53002 * 109.47180 * 65.99117 * 16 14 13 18 18 C 1.53005 * 109.46924 * 144.89524 * 14 13 3 19 19 C 1.52999 * 109.47100 * 294.99635 * 18 14 13 20 20 C 1.50698 * 109.47100 * 180.02562 * 19 18 14 21 21 C 1.38238 * 119.99952 * 269.72304 * 20 19 18 22 22 C 1.38230 * 119.99948 * 179.76457 * 21 20 19 23 23 C 1.38231 * 120.00017 * 0.51415 * 22 21 20 24 24 C 1.38237 * 120.00075 * 359.74331 * 23 22 21 25 25 C 1.38231 * 120.00155 * 90.00175 * 20 19 18 26 26 H 1.08999 * 109.46957 * 294.62539 * 1 2 3 27 27 H 1.09000 * 109.46892 * 54.62520 * 1 2 3 28 28 H 1.08994 * 109.47276 * 174.62264 * 1 2 3 29 29 H 1.09002 * 109.47269 * 239.99709 * 2 1 3 30 30 H 1.09003 * 109.46793 * 120.00035 * 2 1 3 31 31 H 0.96999 * 120.00213 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99923 * 285.92480 * 13 3 2 33 33 H 1.09000 * 109.47395 * 185.99122 * 16 14 13 34 34 H 1.08997 * 109.47655 * 305.99071 * 16 14 13 35 35 H 1.08999 * 109.47330 * 180.71077 * 17 16 14 36 36 H 1.08998 * 109.47193 * 300.71151 * 17 16 14 37 37 H 1.08999 * 109.46993 * 60.71196 * 17 16 14 38 38 H 1.08996 * 109.47110 * 54.99922 * 18 14 13 39 39 H 1.09001 * 109.46796 * 174.99639 * 18 14 13 40 40 H 1.09001 * 109.47010 * 300.00750 * 19 18 14 41 41 H 1.08999 * 109.46835 * 60.00063 * 19 18 14 42 42 H 1.08008 * 119.99828 * 0.02562 * 21 20 19 43 43 H 1.08005 * 119.99768 * 180.23251 * 22 21 20 44 44 H 1.08003 * 120.00026 * 179.72682 * 23 22 21 45 45 H 1.08001 * 119.99958 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.00094 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6140 1.9785 0.8481 5 6 3.5431 1.4438 0.1086 6 1 4.1405 1.8912 -0.6721 7 6 4.1556 0.8740 1.2045 8 7 5.4673 0.8756 1.2995 9 14 3.1224 0.1009 2.5551 10 1 2.8973 -1.3341 2.2461 11 1 3.8333 0.2221 3.8532 12 1 1.8149 0.8000 2.6396 13 7 1.6387 2.1037 -1.2489 14 6 1.7211 3.5649 -1.1209 15 1 2.4443 3.8216 -0.3470 16 6 0.3478 4.1218 -0.7407 17 6 -0.0301 3.6350 0.6597 18 6 2.1652 4.1693 -2.4546 19 6 3.5893 3.7099 -2.7737 20 6 4.0269 4.3058 -4.0869 21 6 3.7958 3.6234 -5.2667 22 6 4.1928 4.1721 -6.4717 23 6 4.8304 5.3984 -6.4960 24 6 5.0663 6.0783 -5.3158 25 6 4.6645 5.5320 -4.1112 26 1 -0.3633 0.4282 0.9342 27 1 -0.3633 0.5949 -0.8379 28 1 -0.3633 -1.0231 -0.0963 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8983 0.4750 2.0707 32 1 2.1936 1.7769 -2.0256 33 1 0.3823 5.2112 -0.7497 34 1 -0.3960 3.7759 -1.4585 35 1 -1.0140 4.0214 0.9255 36 1 -0.0522 2.5453 0.6719 37 1 0.7068 3.9915 1.3794 38 1 1.4913 3.8396 -3.2452 39 1 2.1409 5.2569 -2.3865 40 1 4.2632 4.0396 -1.9829 41 1 3.6135 2.6223 -2.8417 42 1 3.3012 2.6634 -5.2473 43 1 4.0089 3.6407 -7.3937 44 1 5.1446 5.8251 -7.4371 45 1 5.5648 7.0362 -5.3348 46 1 4.8487 6.0633 -3.1891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664171425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:21 Heat of formation + Delta-G solvation = 1.294147 kcal Electronic energy + Delta-G solvation = -21906.052589 eV Core-core repulsion = 18987.468033 eV Total energy + Delta-G solvation = -2918.584556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.23151 -37.69511 -34.55362 -32.93847 -31.87992 -30.77007 -30.58694 -29.06391 -26.70555 -25.18001 -22.49270 -22.43615 -22.33916 -20.51643 -19.84587 -19.61959 -17.06816 -16.55399 -15.52857 -15.15039 -14.93205 -14.75939 -14.12722 -13.45927 -13.40633 -13.34518 -13.12591 -12.88259 -12.82662 -12.56713 -12.23163 -12.13463 -11.74708 -11.62386 -11.23340 -11.16314 -11.04170 -10.94686 -10.87472 -10.65615 -10.35126 -10.27764 -10.06511 -9.89729 -9.54059 -9.40941 -9.11896 -8.80970 -8.52958 -8.49677 -7.26138 -6.10417 -4.10179 1.49783 1.51341 3.26544 3.37543 3.39228 3.91292 4.38812 4.93313 4.98587 5.07277 5.13141 5.22327 5.24385 5.43979 5.50591 5.59265 5.67913 5.72538 5.79902 5.91156 5.99479 6.03561 6.08546 6.10563 6.20483 6.25541 6.27714 6.35674 6.42268 6.50337 6.54255 6.59976 6.60231 6.66301 6.69142 6.76546 6.85041 6.89768 6.95084 7.03051 7.14648 7.19139 7.32804 7.62684 8.13786 8.45912 8.53925 8.93366 9.54287 11.02396 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.004934 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.102080 B = 5673.188375 C = 6335.454436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C 0.175 3.825 4 H 0.045 0.955 5 C -0.544 4.544 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.300 1.300 12 H -0.264 1.264 13 N -0.675 5.675 14 C 0.088 3.912 15 H 0.059 0.941 16 C -0.104 4.104 17 C -0.156 4.156 18 C -0.110 4.110 19 C -0.086 4.086 20 C -0.066 4.066 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.121 4.121 25 C -0.120 4.120 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.331 0.669 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.041 7.550 -10.382 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.066 3.934 4 H 0.063 0.937 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.228 1.228 12 H -0.189 1.189 13 N -0.306 5.306 14 C -0.023 4.023 15 H 0.077 0.923 16 C -0.143 4.143 17 C -0.213 4.213 18 C -0.148 4.148 19 C -0.123 4.123 20 C -0.066 4.066 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.153 4.153 24 C -0.139 4.139 25 C -0.138 4.138 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.140 0.860 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.566 7.479 -10.123 14.195 hybrid contribution 0.756 -0.426 0.809 1.187 sum -5.810 7.052 -9.313 13.047 Atomic orbital electron populations 1.21774 0.97638 0.99475 1.01325 1.21838 0.93812 0.99683 1.00260 1.19806 0.94038 0.90397 0.89167 0.93721 1.21834 0.90704 1.38473 1.07268 0.90654 1.24993 0.94654 0.95421 0.97898 1.69918 1.08499 1.45188 1.30104 0.86874 0.80604 0.79893 0.80967 1.20638 1.22787 1.18938 1.60833 1.59421 1.03206 1.07121 1.21454 0.95559 0.89520 0.95726 0.92261 1.21479 0.97554 0.98158 0.97082 1.21936 0.99372 1.03213 0.96817 1.21747 0.95061 1.00010 0.98027 1.20743 0.97109 1.01248 0.93246 1.20097 0.96495 0.94351 0.95633 1.21123 1.00330 1.00075 0.92056 1.21110 0.99046 0.95932 0.97799 1.21060 1.00524 0.95789 0.97920 1.21103 1.00303 0.99799 0.92725 1.21108 0.98974 0.95720 0.97953 0.94301 0.91538 0.94961 0.92668 0.93864 0.92780 0.85054 0.93374 0.92241 0.94345 0.90717 0.93408 0.91870 0.92266 0.90494 0.90182 0.86004 0.86452 0.86635 0.86493 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.06 37.16 0.34 -2.26 16 2 C -0.12 -2.51 5.11 -26.73 -0.14 -2.64 16 3 C 0.18 3.86 0.78 -68.86 -0.05 3.81 16 4 H 0.05 1.04 4.43 -51.93 -0.23 0.81 16 5 C -0.54 -14.30 8.57 -34.44 -0.30 -14.59 16 6 H 0.08 2.12 7.59 -52.49 -0.40 1.72 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 9 Si 0.89 21.77 24.41 -169.99 -4.15 17.63 16 10 H -0.28 -6.77 6.83 56.52 0.39 -6.38 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.67 -12.61 5.23 -100.95 -0.53 -13.14 16 14 C 0.09 1.50 2.05 -67.71 -0.14 1.37 16 15 H 0.06 1.20 7.31 -51.93 -0.38 0.82 16 16 C -0.10 -1.61 5.60 -26.73 -0.15 -1.76 16 17 C -0.16 -2.54 8.69 37.16 0.32 -2.22 16 18 C -0.11 -1.64 4.71 -26.73 -0.13 -1.76 16 19 C -0.09 -1.36 4.92 -27.88 -0.14 -1.49 16 20 C -0.07 -0.95 5.13 -104.63 -0.54 -1.48 16 21 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 22 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 23 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 25 C -0.12 -1.61 9.70 -39.59 -0.38 -2.00 16 26 H 0.04 0.69 7.52 -51.93 -0.39 0.30 16 27 H 0.07 1.15 7.59 -51.93 -0.39 0.75 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.04 0.99 3.22 -51.93 -0.17 0.82 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.33 6.23 6.33 -39.29 -0.25 5.98 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.33 4.50 -51.93 -0.23 1.10 16 37 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 41 H 0.08 1.37 6.28 -51.93 -0.33 1.04 16 42 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -28.36 350.25 -9.46 -37.83 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.87 Total: 9.24 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -2.97 Total: -30.68 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.25 Total: -39.28 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.15 Total: 17.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.36 -9.46 -37.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664171425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.120 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds