Wall clock time and date at job start Mon Mar 30 2020 01:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 H 1.08997 * 109.47484 * 55.61604 * 3 2 1 5 5 C 1.50701 * 109.46965 * 175.61758 * 3 2 1 6 6 H 1.07999 * 119.99998 * 119.99937 * 5 3 2 7 7 C 1.37878 * 119.99943 * 299.99928 * 5 3 2 8 8 N 1.31515 * 119.99961 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00222 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47246 * 89.99933 * 9 7 5 11 11 H 1.48496 * 109.47574 * 210.00185 * 9 7 5 12 12 H 1.48506 * 109.46841 * 330.00557 * 9 7 5 13 13 N 1.46901 * 109.47062 * 295.61560 * 3 2 1 14 14 C 1.46904 * 110.99774 * 161.97616 * 13 3 2 15 15 H 1.08993 * 109.47503 * 24.89348 * 14 13 3 16 16 C 1.52995 * 109.46798 * 264.89113 * 14 13 3 17 17 C 1.53002 * 109.47180 * 65.99117 * 16 14 13 18 18 C 1.53005 * 109.46924 * 144.89524 * 14 13 3 19 19 C 1.52999 * 109.47100 * 294.99635 * 18 14 13 20 20 C 1.50698 * 109.47100 * 180.02562 * 19 18 14 21 21 C 1.38238 * 119.99952 * 269.72304 * 20 19 18 22 22 C 1.38230 * 119.99948 * 179.76457 * 21 20 19 23 23 C 1.38231 * 120.00017 * 0.51415 * 22 21 20 24 24 C 1.38237 * 120.00075 * 359.74331 * 23 22 21 25 25 C 1.38231 * 120.00155 * 90.00175 * 20 19 18 26 26 H 1.08999 * 109.46957 * 294.62539 * 1 2 3 27 27 H 1.09000 * 109.46892 * 54.62520 * 1 2 3 28 28 H 1.08994 * 109.47276 * 174.62264 * 1 2 3 29 29 H 1.09002 * 109.47269 * 239.99709 * 2 1 3 30 30 H 1.09003 * 109.46793 * 120.00035 * 2 1 3 31 31 H 0.96999 * 120.00213 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99923 * 285.92480 * 13 3 2 33 33 H 1.09000 * 109.47395 * 185.99122 * 16 14 13 34 34 H 1.08997 * 109.47655 * 305.99071 * 16 14 13 35 35 H 1.08999 * 109.47330 * 180.71077 * 17 16 14 36 36 H 1.08998 * 109.47193 * 300.71151 * 17 16 14 37 37 H 1.08999 * 109.46993 * 60.71196 * 17 16 14 38 38 H 1.08996 * 109.47110 * 54.99922 * 18 14 13 39 39 H 1.09001 * 109.46796 * 174.99639 * 18 14 13 40 40 H 1.09001 * 109.47010 * 300.00750 * 19 18 14 41 41 H 1.08999 * 109.46835 * 60.00063 * 19 18 14 42 42 H 1.08008 * 119.99828 * 0.02562 * 21 20 19 43 43 H 1.08005 * 119.99768 * 180.23251 * 22 21 20 44 44 H 1.08003 * 120.00026 * 179.72682 * 23 22 21 45 45 H 1.08001 * 119.99958 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.00094 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6140 1.9785 0.8481 5 6 3.5431 1.4438 0.1086 6 1 4.1405 1.8912 -0.6721 7 6 4.1556 0.8740 1.2045 8 7 5.4673 0.8756 1.2995 9 14 3.1224 0.1009 2.5551 10 1 2.8973 -1.3341 2.2461 11 1 3.8333 0.2221 3.8532 12 1 1.8149 0.8000 2.6396 13 7 1.6387 2.1037 -1.2489 14 6 1.7211 3.5649 -1.1209 15 1 2.4443 3.8216 -0.3470 16 6 0.3478 4.1218 -0.7407 17 6 -0.0301 3.6350 0.6597 18 6 2.1652 4.1693 -2.4546 19 6 3.5893 3.7099 -2.7737 20 6 4.0269 4.3058 -4.0869 21 6 3.7958 3.6234 -5.2667 22 6 4.1928 4.1721 -6.4717 23 6 4.8304 5.3984 -6.4960 24 6 5.0663 6.0783 -5.3158 25 6 4.6645 5.5320 -4.1112 26 1 -0.3633 0.4282 0.9342 27 1 -0.3633 0.5949 -0.8379 28 1 -0.3633 -1.0231 -0.0963 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8983 0.4750 2.0707 32 1 2.1936 1.7769 -2.0256 33 1 0.3823 5.2112 -0.7497 34 1 -0.3960 3.7759 -1.4585 35 1 -1.0140 4.0214 0.9255 36 1 -0.0522 2.5453 0.6719 37 1 0.7068 3.9915 1.3794 38 1 1.4913 3.8396 -3.2452 39 1 2.1409 5.2569 -2.3865 40 1 4.2632 4.0396 -1.9829 41 1 3.6135 2.6223 -2.8417 42 1 3.3012 2.6634 -5.2473 43 1 4.0089 3.6407 -7.3937 44 1 5.1446 5.8251 -7.4371 45 1 5.5648 7.0362 -5.3348 46 1 4.8487 6.0633 -3.1891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664171425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:21 Heat of formation + Delta-G solvation = -13.625133 kcal Electronic energy + Delta-G solvation = -21906.699537 eV Core-core repulsion = 18987.468033 eV Total energy + Delta-G solvation = -2919.231504 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.29760 -39.16169 -36.12819 -34.32591 -33.77778 -31.97106 -31.72961 -30.36859 -28.45511 -26.57995 -24.24750 -23.51425 -23.41094 -21.71461 -21.53717 -21.03625 -19.03005 -17.56879 -17.16764 -16.64362 -16.18689 -15.96234 -15.53695 -15.14563 -14.82187 -14.65516 -14.46980 -14.15884 -14.12539 -13.85270 -13.74299 -13.45943 -13.34340 -13.20130 -12.89190 -12.53914 -12.45235 -12.35219 -12.10261 -11.99656 -11.88520 -11.61853 -11.58636 -11.32457 -11.21745 -11.15091 -10.98610 -10.58970 -9.78576 -9.53547 -8.92991 -8.28542 -6.30502 0.49941 0.53592 1.28947 1.34055 1.43667 2.31680 2.92081 3.07995 3.62528 3.77642 3.95364 4.14546 4.22071 4.27834 4.30295 4.36572 4.42111 4.50314 4.53553 4.62507 4.68364 4.69826 4.74415 4.77869 4.89506 4.98233 5.07396 5.11143 5.17061 5.19067 5.19685 5.22211 5.25614 5.34810 5.36908 5.44624 5.53524 5.62149 5.64361 5.64963 5.67580 5.71183 5.81264 6.17399 6.22581 6.51661 6.77581 6.90425 7.38068 8.87546 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.004934 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.102080 B = 5673.188375 C = 6335.454436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.183 3.817 4 H 0.041 0.959 5 C -0.535 4.535 6 H 0.042 0.958 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.306 1.306 12 H -0.247 1.247 13 N -0.660 5.660 14 C 0.087 3.913 15 H 0.021 0.979 16 C -0.098 4.098 17 C -0.156 4.156 18 C -0.097 4.097 19 C -0.075 4.075 20 C -0.086 4.086 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.123 4.123 25 C -0.137 4.137 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.329 0.671 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 8.212 -11.936 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.073 3.927 4 H 0.058 0.942 5 C -0.574 4.574 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.590 5.590 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.234 1.234 12 H -0.171 1.171 13 N -0.290 5.290 14 C -0.023 4.023 15 H 0.039 0.961 16 C -0.136 4.136 17 C -0.214 4.214 18 C -0.135 4.135 19 C -0.113 4.113 20 C -0.086 4.086 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.141 4.141 25 C -0.155 4.155 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.159 0.841 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.950 8.149 -11.691 16.828 hybrid contribution 1.561 -0.551 1.175 2.030 sum -7.390 7.598 -10.516 14.931 Atomic orbital electron populations 1.21672 0.94530 1.01119 1.01863 1.21785 0.96566 0.98133 0.99357 1.19648 0.90848 0.91691 0.90508 0.94174 1.22212 0.93137 1.36330 1.05744 0.93980 1.25772 0.95505 0.96479 1.00464 1.70068 1.10423 1.47410 1.31128 0.85949 0.79660 0.79574 0.77780 1.19696 1.23390 1.17058 1.60882 1.58468 1.04093 1.05566 1.21516 0.96222 0.88672 0.95929 0.96101 1.21444 0.96062 0.99249 0.96893 1.21918 1.00361 1.02183 0.96897 1.21641 0.94399 1.00558 0.96927 1.20529 0.97334 0.99823 0.93579 1.20010 0.98230 0.95283 0.95076 1.21260 1.00965 1.00354 0.92412 1.21443 0.98255 0.96274 0.98048 1.21472 0.99291 0.95357 0.98960 1.21421 0.99757 1.00740 0.92214 1.21238 0.99565 0.95701 0.98955 0.93967 0.90742 0.92822 0.93046 0.95350 0.92974 0.85283 0.91462 0.90915 0.91793 0.92281 0.95027 0.90533 0.90948 0.93639 0.92342 0.85760 0.83926 0.83590 0.84098 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.06 71.98 0.65 -3.81 16 2 C -0.12 -4.98 5.11 30.59 0.16 -4.83 16 3 C 0.18 8.11 0.78 44.17 0.03 8.14 16 4 H 0.04 1.86 4.43 -2.39 -0.01 1.85 16 5 C -0.54 -29.29 8.57 25.60 0.22 -29.07 16 6 H 0.04 2.53 7.59 -2.91 -0.02 2.51 16 7 C 0.02 0.88 5.45 84.65 0.46 1.34 16 8 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 9 Si 0.94 45.52 24.41 68.60 1.67 47.20 16 10 H -0.27 -12.60 6.83 99.48 0.68 -11.92 16 11 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 12 H -0.25 -11.08 6.53 99.48 0.65 -10.43 16 13 N -0.66 -24.66 5.23 -473.31 -2.48 -27.13 16 14 C 0.09 2.99 2.05 44.91 0.09 3.08 16 15 H 0.02 0.88 7.31 -2.39 -0.02 0.86 16 16 C -0.10 -2.83 5.60 30.59 0.17 -2.66 16 17 C -0.16 -4.80 8.69 71.98 0.63 -4.17 16 18 C -0.10 -2.88 4.71 30.60 0.14 -2.74 16 19 C -0.07 -2.50 4.92 29.85 0.15 -2.36 16 20 C -0.09 -2.52 5.13 -19.87 -0.10 -2.63 16 21 C -0.13 -3.47 9.70 22.27 0.22 -3.25 16 22 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 23 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 24 C -0.12 -2.73 10.05 22.27 0.22 -2.50 16 25 C -0.14 -3.68 9.70 22.27 0.22 -3.46 16 26 H 0.04 1.37 7.52 -2.39 -0.02 1.35 16 27 H 0.07 2.35 7.59 -2.39 -0.02 2.33 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.03 1.26 3.22 -2.39 -0.01 1.25 16 31 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.33 12.64 6.33 -89.69 -0.57 12.08 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.99 4.50 -2.39 -0.01 1.98 16 37 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.75 8.09 -2.39 -0.02 1.73 16 41 H 0.06 2.16 6.28 -2.39 -0.02 2.14 16 42 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 46 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -63.43 350.25 3.49 -59.95 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.29 Total: 32.89 kcal Atomic # 6 Polarization: -57.49 SS G_CDS: 3.70 Total: -53.79 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -2.18 Total: -86.25 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.67 Total: 47.20 kcal Total: -63.43 3.49 -59.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664171425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.320 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds