Wall clock time and date at job start Mon Mar 30 2020 01:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 H 1.09006 * 109.46749 * 55.84069 * 3 2 1 5 5 C 1.50695 * 109.47525 * 175.83751 * 3 2 1 6 6 H 1.08004 * 119.99945 * 120.00009 * 5 3 2 7 7 C 1.37870 * 120.00211 * 300.00682 * 5 3 2 8 8 N 1.31517 * 120.00100 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00313 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46949 * 89.99834 * 9 7 5 11 11 H 1.48501 * 109.47698 * 209.99683 * 9 7 5 12 12 H 1.48499 * 109.47019 * 329.99976 * 9 7 5 13 13 N 1.46899 * 109.47415 * 295.84178 * 3 2 1 14 14 C 1.46895 * 111.00370 * 159.89439 * 13 3 2 15 15 H 1.08998 * 109.46952 * 18.08018 * 14 13 3 16 16 C 1.53002 * 109.47062 * 138.07480 * 14 13 3 17 17 C 1.53009 * 109.46922 * 294.42383 * 16 14 13 18 18 C 1.53001 * 109.47911 * 258.07508 * 14 13 3 19 19 C 1.52996 * 109.46540 * 65.89875 * 18 14 13 20 20 C 1.50702 * 109.47043 * 180.29625 * 19 18 14 21 21 C 1.38241 * 120.00009 * 269.73085 * 20 19 18 22 22 C 1.38233 * 120.00142 * 179.75971 * 21 20 19 23 23 C 1.38240 * 119.99876 * 0.51115 * 22 21 20 24 24 C 1.38234 * 119.99859 * 359.74122 * 23 22 21 25 25 C 1.38233 * 120.00233 * 89.99851 * 20 19 18 26 26 H 1.09008 * 109.46974 * 174.72571 * 1 2 3 27 27 H 1.08999 * 109.47614 * 294.72142 * 1 2 3 28 28 H 1.08998 * 109.47324 * 54.72799 * 1 2 3 29 29 H 1.08994 * 109.47307 * 120.00099 * 2 1 3 30 30 H 1.08998 * 109.47091 * 240.00485 * 2 1 3 31 31 H 0.97002 * 120.00189 * 180.02562 * 8 7 5 32 32 H 1.00896 * 110.99993 * 283.85379 * 13 3 2 33 33 H 1.09001 * 109.47186 * 54.41901 * 16 14 13 34 34 H 1.08997 * 109.47343 * 174.42628 * 16 14 13 35 35 H 1.08999 * 109.46701 * 65.70384 * 17 16 14 36 36 H 1.09003 * 109.46605 * 185.70142 * 17 16 14 37 37 H 1.08993 * 109.46935 * 305.69785 * 17 16 14 38 38 H 1.08992 * 109.47178 * 185.90276 * 18 14 13 39 39 H 1.09000 * 109.46755 * 305.90806 * 18 14 13 40 40 H 1.08999 * 109.47764 * 300.29066 * 19 18 14 41 41 H 1.08999 * 109.47368 * 60.30160 * 19 18 14 42 42 H 1.08003 * 119.99571 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.00340 * 180.22385 * 22 21 20 44 44 H 1.08000 * 119.99820 * 179.71785 * 23 22 21 45 45 H 1.08000 * 119.99925 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00312 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6170 1.9774 0.8504 5 6 3.5434 1.4439 0.1031 6 1 4.1379 1.8923 -0.6791 7 6 4.1599 0.8726 1.1960 8 7 3.4360 0.3268 2.1487 9 14 6.0235 0.8736 1.3235 10 1 6.4709 2.1031 2.0260 11 1 6.4684 -0.3212 2.0850 12 1 6.6129 0.8399 -0.0391 13 7 1.6340 2.1055 -1.2465 14 6 1.6697 3.5668 -1.1013 15 1 2.2803 3.8314 -0.2381 16 6 2.2719 4.1900 -2.3623 17 6 3.7385 3.7722 -2.4871 18 6 0.2476 4.0944 -0.9010 19 6 -0.3008 3.5879 0.4344 20 6 -1.7042 4.1016 0.6285 21 6 -1.9162 5.3081 1.2691 22 6 -3.2032 5.7817 1.4428 23 6 -4.2789 5.0437 0.9851 24 6 -4.0672 3.8348 0.3492 25 6 -2.7798 3.3637 0.1709 26 1 -0.3633 -1.0234 -0.0945 27 1 -0.3634 0.4298 0.9334 28 1 -0.3634 0.5934 -0.8390 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.8698 -0.0748 2.9178 32 1 2.2084 1.8047 -2.0196 33 1 1.7203 3.8453 -3.2369 34 1 2.2079 5.2761 -2.2970 35 1 3.7969 2.6966 -2.6540 36 1 4.1951 4.2955 -3.3272 37 1 4.2682 4.0268 -1.5692 38 1 0.2614 5.1843 -0.8983 39 1 -0.3887 3.7411 -1.7125 40 1 -0.3099 2.4979 0.4336 41 1 0.3324 3.9454 1.2464 42 1 -1.0761 5.8823 1.6309 43 1 -3.3687 6.7260 1.9400 44 1 -5.2847 5.4116 1.1248 45 1 -4.9076 3.2581 -0.0080 46 1 -2.6145 2.4188 -0.3254 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664171426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:23 Heat of formation + Delta-G solvation = -20.155378 kcal Electronic energy + Delta-G solvation = -22022.950622 eV Core-core repulsion = 19103.435945 eV Total energy + Delta-G solvation = -2919.514677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21641 -38.98383 -35.95251 -34.31877 -33.58638 -31.68770 -31.46951 -30.44426 -28.07986 -26.41710 -24.51797 -23.46202 -23.35128 -21.75433 -21.25584 -20.87187 -18.62111 -17.48231 -16.98531 -16.50106 -15.98404 -15.80826 -15.58866 -15.06359 -14.73464 -14.60967 -14.44248 -14.15361 -13.92519 -13.69412 -13.44463 -13.29221 -13.14344 -13.00038 -12.75261 -12.55389 -12.47987 -12.22883 -12.12002 -12.02255 -11.90523 -11.66293 -11.46535 -11.42068 -11.18397 -10.97858 -10.85307 -10.35768 -9.74460 -9.47732 -8.90022 -7.97604 -6.18454 0.55411 0.57698 1.36663 1.39668 1.47132 2.42715 2.97082 3.21425 3.77161 3.89866 4.05663 4.13335 4.25187 4.33528 4.38918 4.40108 4.45819 4.65337 4.67292 4.73595 4.78713 4.79931 4.87434 4.92600 4.97062 5.10295 5.13532 5.15976 5.23203 5.25110 5.30207 5.30708 5.39912 5.45005 5.52966 5.60779 5.64091 5.67129 5.68993 5.73306 5.86515 5.92307 6.21310 6.22534 6.32410 6.53021 6.98934 7.14399 7.52946 8.97258 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.004914 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.601930 B = 5696.705048 C = 6201.203844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.225 3.775 4 H 0.011 0.989 5 C -0.551 4.551 6 H 0.059 0.941 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.939 3.061 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.672 5.672 14 C 0.090 3.910 15 H 0.022 0.978 16 C -0.119 4.119 17 C -0.148 4.148 18 C -0.080 4.080 19 C -0.080 4.080 20 C -0.083 4.083 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.132 4.132 26 H 0.040 0.960 27 H 0.028 0.972 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.024 0.976 31 H 0.258 0.742 32 H 0.327 0.673 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.121 0.879 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 9.375 -5.697 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.116 3.884 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.766 3.234 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.302 5.302 14 C -0.021 4.021 15 H 0.040 0.960 16 C -0.157 4.157 17 C -0.205 4.205 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.083 4.083 21 C -0.156 4.156 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.141 4.141 25 C -0.150 4.150 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.139 0.861 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.158 0.842 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.011 9.235 -5.392 16.082 hybrid contribution 2.442 -0.253 0.672 2.545 sum -9.569 8.982 -4.719 13.947 Atomic orbital electron populations 1.21589 0.96539 0.99658 1.00337 1.21379 0.94292 0.99031 0.99688 1.18969 0.91044 0.90982 0.87407 0.97157 1.22395 0.94527 1.36572 1.05540 0.92249 1.25594 1.01239 0.95323 0.95854 1.70014 1.36021 1.39281 1.10003 0.85858 0.82329 0.77183 0.78047 1.20810 1.21330 1.19429 1.60882 1.58024 1.04549 1.06748 1.21481 0.95018 0.88979 0.96586 0.95951 1.21730 0.95569 1.00746 0.97657 1.21782 0.96701 1.01039 1.01000 1.21425 0.95512 0.98821 0.96052 1.20640 0.91659 1.01708 0.97742 1.20113 0.95484 0.95158 0.97571 1.21250 0.98035 0.96079 1.00186 1.21417 0.92196 1.00641 0.99862 1.21445 0.99875 0.95065 0.98866 1.21427 0.96771 0.96847 0.99070 1.21229 0.92892 1.00148 1.00732 0.94095 0.95292 0.91841 0.92508 0.95714 0.93314 0.85505 0.90743 0.90765 0.93627 0.91286 0.94584 0.91917 0.91636 0.90820 0.93950 0.86137 0.84072 0.83686 0.84171 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.77 71.98 0.63 -4.31 16 2 C -0.11 -4.99 5.45 30.59 0.17 -4.83 16 3 C 0.22 10.76 1.15 44.17 0.05 10.81 16 4 H 0.01 0.57 6.22 -2.38 -0.01 0.55 16 5 C -0.55 -28.97 8.16 25.60 0.21 -28.76 16 6 H 0.06 3.04 6.11 -2.91 -0.02 3.03 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.35 11.30 21.45 0.24 -52.10 16 9 Si 0.94 43.54 29.54 68.60 2.03 45.56 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 13 N -0.67 -26.39 5.11 -473.32 -2.42 -28.80 16 14 C 0.09 3.17 1.97 44.92 0.09 3.26 16 15 H 0.02 0.95 7.36 -2.39 -0.02 0.93 16 16 C -0.12 -3.43 5.37 30.60 0.16 -3.26 16 17 C -0.15 -4.51 8.88 71.99 0.64 -3.87 16 18 C -0.08 -2.51 4.87 30.59 0.15 -2.36 16 19 C -0.08 -2.76 4.27 29.85 0.13 -2.63 16 20 C -0.08 -2.51 5.13 -19.86 -0.10 -2.61 16 21 C -0.14 -3.69 9.70 22.27 0.22 -3.48 16 22 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 23 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 24 C -0.12 -2.80 10.05 22.27 0.22 -2.57 16 25 C -0.13 -3.66 9.70 22.27 0.22 -3.44 16 26 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.03 1.17 7.54 -2.39 -0.02 1.15 16 28 H 0.06 2.37 7.45 -2.39 -0.02 2.36 16 29 H 0.06 3.08 5.97 -2.39 -0.01 3.07 16 30 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.33 12.83 6.48 -89.70 -0.58 12.25 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 1.51 6.19 -2.39 -0.01 1.50 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.03 1.23 8.00 -2.39 -0.02 1.21 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 2.85 4.57 -2.39 -0.01 2.84 16 41 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 42 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -58.25 355.68 3.88 -54.38 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.35 Total: 32.57 kcal Atomic # 6 Polarization: -55.28 SS G_CDS: 3.68 Total: -51.60 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.18 Total: -80.91 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -58.25 3.88 -54.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664171426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.220 kcal (2) G-P(sol) polarization free energy of solvation -58.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds