Wall clock time and date at job start Mon Mar 30 2020 01:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46914 * 2 1 4 4 H 1.08997 * 109.47258 * 306.00497 * 3 2 1 5 5 C 1.53001 * 109.46727 * 186.00763 * 3 2 1 6 6 C 1.53001 * 109.46824 * 175.00375 * 5 3 2 7 7 C 1.50705 * 109.46871 * 179.97438 * 6 5 3 8 8 C 1.38235 * 120.00003 * 269.72157 * 7 6 5 9 9 C 1.38230 * 119.99987 * 179.76641 * 8 7 6 10 10 C 1.38241 * 120.00099 * 0.50938 * 9 8 7 11 11 C 1.38232 * 119.99871 * 359.74621 * 10 9 8 12 12 C 1.38232 * 120.00164 * 89.99917 * 7 6 5 13 13 N 1.46900 * 109.47090 * 66.00862 * 3 2 1 14 14 C 1.46900 * 110.99826 * 273.60537 * 13 3 2 15 15 H 1.08996 * 109.46833 * 17.84866 * 14 13 3 16 16 C 1.50701 * 109.46878 * 137.85250 * 14 13 3 17 17 H 1.08000 * 120.00177 * 5.12108 * 16 14 13 18 18 C 1.37883 * 119.99805 * 185.13045 * 16 14 13 19 19 N 1.31507 * 119.99566 * 196.45189 * 18 16 14 20 20 Si 1.86797 * 120.00064 * 16.44774 * 18 16 14 21 21 H 1.48501 * 109.47259 * 94.36029 * 20 18 16 22 22 H 1.48500 * 109.47212 * 214.36289 * 20 18 16 23 23 H 1.48504 * 109.47070 * 334.36043 * 20 18 16 24 24 C 1.52997 * 109.46858 * 257.84665 * 14 13 3 25 25 C 1.53002 * 109.47112 * 66.25816 * 24 14 13 26 26 H 1.09000 * 109.47256 * 178.59943 * 1 2 3 27 27 H 1.09005 * 109.46944 * 298.60170 * 1 2 3 28 28 H 1.09001 * 109.47139 * 58.59894 * 1 2 3 29 29 H 1.08997 * 109.46805 * 240.00162 * 2 1 3 30 30 H 1.08998 * 109.47102 * 120.00361 * 2 1 3 31 31 H 1.08997 * 109.47422 * 55.00091 * 5 3 2 32 32 H 1.09002 * 109.47052 * 294.99947 * 5 3 2 33 33 H 1.08997 * 109.47353 * 59.99674 * 6 5 3 34 34 H 1.09002 * 109.46956 * 299.99630 * 6 5 3 35 35 H 1.07994 * 119.99855 * 0.02562 * 8 7 6 36 36 H 1.08004 * 120.00343 * 180.23461 * 9 8 7 37 37 H 1.07993 * 120.00317 * 179.72202 * 10 9 8 38 38 H 1.07998 * 120.00407 * 179.97438 * 11 10 9 39 39 H 1.08008 * 119.99934 * 0.02562 * 12 7 6 40 40 H 1.00900 * 110.99752 * 149.64879 * 13 3 2 41 41 H 0.97006 * 119.99684 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.46730 * 186.25145 * 24 14 13 43 43 H 1.08996 * 109.47759 * 306.25345 * 24 14 13 44 44 H 1.09000 * 109.46855 * 303.27418 * 25 24 14 45 45 H 1.08997 * 109.47645 * 63.27119 * 25 24 14 46 46 H 1.09002 * 109.47376 * 183.27547 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9865 -0.8313 5 6 3.5625 1.4451 -0.1510 6 6 4.0601 2.8866 -0.2761 7 6 5.5598 2.8892 -0.4242 8 6 6.3650 2.9589 0.6973 9 6 7.7406 2.9564 0.5618 10 6 8.3112 2.8948 -0.6959 11 6 7.5060 2.8304 -1.8177 12 6 6.1303 2.8276 -1.6818 13 7 1.6722 2.0919 1.2653 14 6 0.3233 2.6686 1.1885 15 1 -0.2146 2.2242 0.3511 16 6 -0.4180 2.3847 2.4695 17 1 0.0903 1.9045 3.2925 18 6 -1.7453 2.7380 2.5906 19 7 -2.3043 2.7959 3.7795 20 14 -2.7492 3.1343 1.0660 21 1 -3.4677 1.9152 0.6157 22 1 -3.7335 4.1997 1.3846 23 1 -1.8446 3.6032 -0.0143 24 6 0.4264 4.1813 0.9835 25 6 1.0390 4.4694 -0.3887 26 1 -0.3634 -1.0273 -0.0251 27 1 -0.3633 0.4920 0.9023 28 1 -0.3633 0.5354 -0.8772 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8400 0.8861 -1.0446 32 1 4.0152 0.9792 0.7243 33 1 3.7826 3.4456 0.6175 34 1 3.6074 3.3525 -1.1514 35 1 5.9192 3.0112 1.6796 36 1 8.3697 3.0071 1.4382 37 1 9.3858 2.8974 -0.8021 38 1 7.9516 2.7826 -2.8003 39 1 5.5012 2.7780 -2.5583 40 1 2.3510 2.7926 1.5227 41 1 -3.2380 3.0448 3.8648 42 1 -0.5683 4.6238 1.0374 43 1 1.0580 4.6112 1.7608 44 1 2.0090 3.9779 -0.4639 45 1 0.3783 4.0905 -1.1684 46 1 1.1662 5.5450 -0.5112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664171427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:26 Heat of formation + Delta-G solvation = 6.619869 kcal Electronic energy + Delta-G solvation = -21946.563566 eV Core-core repulsion = 19028.209951 eV Total energy + Delta-G solvation = -2918.353615 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.46338 -38.01783 -34.51593 -33.06494 -31.97118 -30.95152 -30.18631 -29.40538 -26.98374 -25.24136 -22.63426 -22.57917 -22.36669 -20.69132 -20.01984 -19.64967 -16.89913 -16.57005 -15.81161 -15.44072 -15.07824 -14.65734 -14.15570 -13.74398 -13.54978 -13.43791 -13.22776 -12.88706 -12.74198 -12.58640 -12.49371 -12.19920 -11.94519 -11.74146 -11.47874 -11.20814 -11.15479 -10.90237 -10.82456 -10.55809 -10.44101 -10.39534 -10.09161 -10.04348 -9.66503 -9.37464 -9.18374 -8.99222 -8.69367 -8.30885 -7.25613 -6.03607 -3.93419 1.29924 1.33040 3.29061 3.38605 3.41451 3.71947 4.46044 4.70512 4.77677 4.91110 5.02803 5.05059 5.22548 5.24442 5.26312 5.42521 5.49453 5.54215 5.76018 5.81311 5.86274 5.86843 5.87787 5.93656 6.00803 6.05248 6.06394 6.25787 6.26537 6.40228 6.42088 6.43465 6.50045 6.54921 6.61765 6.64187 6.66022 6.81222 6.86134 6.95160 7.00330 7.24980 7.29655 7.83625 8.04798 8.45335 8.78163 9.15944 9.64537 11.09918 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.026676 B = 0.004246 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.364179 B = 6592.427368 C = 6794.623310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C 0.083 3.917 4 H 0.038 0.962 5 C -0.113 4.113 6 C -0.089 4.089 7 C -0.071 4.071 8 C -0.116 4.116 9 C -0.119 4.119 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.121 4.121 13 N -0.666 5.666 14 C 0.184 3.816 15 H 0.037 0.963 16 C -0.495 4.495 17 H 0.079 0.921 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.853 3.147 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.256 1.256 24 C -0.149 4.149 25 C -0.166 4.166 26 H 0.038 0.962 27 H 0.101 0.899 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.325 0.675 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.661 0.009 -11.176 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.141 4.141 3 C -0.027 4.027 4 H 0.056 0.944 5 C -0.151 4.151 6 C -0.127 4.127 7 C -0.071 4.071 8 C -0.134 4.134 9 C -0.137 4.137 10 C -0.150 4.150 11 C -0.139 4.139 12 C -0.139 4.139 13 N -0.298 5.298 14 C 0.076 3.924 15 H 0.055 0.945 16 C -0.533 4.533 17 H 0.098 0.902 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.680 3.320 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.181 1.181 24 C -0.188 4.188 25 C -0.223 4.223 26 H 0.057 0.943 27 H 0.120 0.880 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 16.270 -0.538 -10.778 19.524 hybrid contribution -0.581 1.096 -1.390 1.863 sum 15.689 0.559 -12.168 19.863 Atomic orbital electron populations 1.22094 0.95825 1.00564 1.03982 1.21436 0.96470 0.95794 1.00395 1.21650 0.92681 0.95898 0.92474 0.94441 1.21763 0.96036 0.95069 1.02232 1.20849 0.90428 0.98431 1.02954 1.19994 0.95954 0.98027 0.93086 1.21151 0.93509 1.00092 0.98654 1.21153 0.95058 1.00139 0.97345 1.21100 0.99562 1.01486 0.92826 1.21110 0.93797 1.00507 0.98498 1.21069 0.94889 1.00893 0.97014 1.60696 1.04467 1.35726 1.28918 1.19850 0.86684 0.87976 0.97921 0.94546 1.20978 0.94678 1.38511 0.99109 0.90249 1.24888 0.97996 0.94997 0.95003 1.69984 1.12958 1.48225 1.22028 0.87332 0.80773 0.78277 0.85651 1.20670 1.21565 1.18072 1.22585 1.00445 1.01499 0.94312 1.22141 1.00912 0.99986 0.99238 0.94285 0.88048 0.94449 0.93735 0.91590 0.91980 0.91029 0.90387 0.90958 0.85777 0.86237 0.86479 0.86407 0.86288 0.85553 0.92899 0.92474 0.92662 0.92548 0.93808 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 8.50 37.16 0.32 -2.79 16 2 C -0.10 -1.68 5.60 -26.73 -0.15 -1.83 16 3 C 0.08 1.34 1.57 -67.71 -0.11 1.24 16 4 H 0.04 0.63 6.29 -51.93 -0.33 0.30 16 5 C -0.11 -1.49 4.78 -26.73 -0.13 -1.62 16 6 C -0.09 -1.10 3.88 -27.88 -0.11 -1.20 16 7 C -0.07 -0.83 5.13 -104.62 -0.54 -1.37 16 8 C -0.12 -1.33 9.70 -39.59 -0.38 -1.71 16 9 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 10 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 11 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 12 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 13 N -0.67 -12.71 5.83 -100.95 -0.59 -13.30 16 14 C 0.18 4.09 0.57 -68.87 -0.04 4.05 16 15 H 0.04 0.84 3.66 -51.93 -0.19 0.65 16 16 C -0.49 -13.40 8.18 -34.44 -0.28 -13.68 16 17 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 18 C 0.07 2.04 5.31 -17.82 -0.09 1.95 16 19 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 20 Si 0.85 20.92 25.80 -169.99 -4.38 16.53 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.26 -5.91 5.61 56.52 0.32 -5.60 16 24 C -0.15 -3.10 4.54 -26.73 -0.12 -3.22 16 25 C -0.17 -2.83 9.00 37.16 0.33 -2.49 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.10 2.25 5.03 -51.93 -0.26 1.99 16 28 H 0.04 0.66 7.84 -51.93 -0.41 0.26 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.01 6.12 -51.93 -0.32 0.69 16 34 H 0.07 0.87 6.87 -51.93 -0.36 0.52 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.33 5.82 5.72 -39.29 -0.22 5.60 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.06 1.29 5.21 -51.93 -0.27 1.02 16 43 H 0.05 1.13 8.01 -51.93 -0.42 0.72 16 44 H 0.06 0.85 3.15 -51.93 -0.16 0.69 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -29.14 343.55 -9.55 -38.69 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.65 Total: 8.37 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -2.88 Total: -29.26 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.19 Total: -39.51 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.38 Total: 16.53 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.14 -9.55 -38.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664171427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.310 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds