Wall clock time and date at job start Mon Mar 30 2020 01:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47054 * 2 1 4 4 H 1.08999 * 109.47299 * 305.77472 * 3 2 1 5 5 C 1.50699 * 109.47213 * 185.77245 * 3 2 1 6 6 H 1.07999 * 120.00655 * 245.49418 * 5 3 2 7 7 C 1.37884 * 119.99841 * 65.49584 * 5 3 2 8 8 N 1.31511 * 120.00283 * 192.57868 * 7 5 3 9 9 Si 1.86804 * 119.99824 * 12.57702 * 7 5 3 10 10 H 1.48500 * 109.47307 * 86.44431 * 9 7 5 11 11 H 1.48505 * 109.46777 * 206.44315 * 9 7 5 12 12 H 1.48502 * 109.47198 * 326.44307 * 9 7 5 13 13 N 1.46899 * 109.47322 * 65.77669 * 3 2 1 14 14 C 1.46897 * 111.00140 * 198.87145 * 13 3 2 15 15 H 1.08998 * 109.47219 * 340.13895 * 14 13 3 16 16 C 1.53008 * 109.47261 * 100.13134 * 14 13 3 17 17 C 1.52995 * 109.47340 * 296.21254 * 16 14 13 18 18 C 1.53002 * 109.47491 * 220.13376 * 14 13 3 19 19 C 1.52999 * 109.46910 * 64.99841 * 18 14 13 20 20 C 1.50699 * 109.47139 * 180.02562 * 19 18 14 21 21 C 1.38234 * 119.99657 * 269.72543 * 20 19 18 22 22 C 1.38235 * 119.99868 * 179.76797 * 21 20 19 23 23 C 1.38237 * 119.99882 * 0.50425 * 22 21 20 24 24 C 1.38230 * 120.00068 * 359.74850 * 23 22 21 25 25 C 1.38229 * 120.00346 * 90.00326 * 20 19 18 26 26 H 1.09008 * 109.47615 * 305.43936 * 1 2 3 27 27 H 1.08998 * 109.47239 * 65.44003 * 1 2 3 28 28 H 1.09000 * 109.47496 * 185.44274 * 1 2 3 29 29 H 1.08997 * 109.47388 * 240.00144 * 2 1 3 30 30 H 1.09006 * 109.47146 * 119.99538 * 2 1 3 31 31 H 0.96999 * 120.00146 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00497 * 74.91282 * 13 3 2 33 33 H 1.08996 * 109.46592 * 56.21404 * 16 14 13 34 34 H 1.08999 * 109.46901 * 176.20814 * 16 14 13 35 35 H 1.08996 * 109.47170 * 65.05768 * 17 16 14 36 36 H 1.08994 * 109.47242 * 185.06179 * 17 16 14 37 37 H 1.09005 * 109.47121 * 305.06082 * 17 16 14 38 38 H 1.09001 * 109.46813 * 305.00512 * 18 14 13 39 39 H 1.09000 * 109.47067 * 184.99765 * 18 14 13 40 40 H 1.09005 * 109.47165 * 300.00574 * 19 18 14 41 41 H 1.08998 * 109.47120 * 59.99984 * 19 18 14 42 42 H 1.08011 * 120.00247 * 359.97438 * 21 20 19 43 43 H 1.08001 * 120.00193 * 180.23495 * 22 21 20 44 44 H 1.08004 * 119.99829 * 179.72763 * 23 22 21 45 45 H 1.08003 * 120.00214 * 179.97438 * 24 23 22 46 46 H 1.08007 * 119.99784 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5946 1.9853 -0.8337 5 6 3.5401 1.4450 -0.1429 6 1 4.1591 1.8050 0.6656 7 6 4.1226 0.9875 -1.3059 8 7 5.4164 0.7553 -1.3463 9 14 3.0738 0.6975 -2.8244 10 1 2.9493 1.9643 -3.5893 11 1 3.7139 -0.3353 -3.6781 12 1 1.7247 0.2331 -2.4129 13 7 1.6674 2.0936 1.2630 14 6 1.7277 3.5561 1.1392 15 1 2.3544 3.8232 0.2883 16 6 0.3167 4.1086 0.9264 17 6 -0.2408 3.5867 -0.3994 18 6 2.3214 4.1523 2.4171 19 6 3.7751 3.6982 2.5640 20 6 4.3598 4.2848 3.8230 21 6 4.9951 5.5119 3.7835 22 6 5.5272 6.0522 4.9392 23 6 5.4331 5.3607 6.1325 24 6 4.8024 4.1313 6.1710 25 6 4.2658 3.5934 5.0162 26 1 -0.3634 0.5959 0.8373 27 1 -0.3633 0.4271 -0.9347 28 1 -0.3634 -1.0230 0.0975 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 5.8261 0.4331 -2.1644 32 1 2.2490 1.7707 2.0217 33 1 -0.3272 3.7848 1.7440 34 1 0.3529 5.1977 0.9018 35 1 -0.3612 2.5049 -0.3422 36 1 -1.2078 4.0502 -0.5945 37 1 0.4497 3.8332 -1.2061 38 1 1.7458 3.8123 3.2780 39 1 2.2844 5.2402 2.3618 40 1 3.8121 2.6102 2.6192 41 1 4.3506 4.0381 1.7030 42 1 5.0729 6.0500 2.8502 43 1 6.0203 7.0126 4.9091 44 1 5.8527 5.7809 7.0346 45 1 4.7292 3.5909 7.1032 46 1 3.7729 2.6328 5.0463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664171428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:28 Heat of formation + Delta-G solvation = -2.262928 kcal Electronic energy + Delta-G solvation = -21936.025665 eV Core-core repulsion = 19017.286863 eV Total energy + Delta-G solvation = -2918.738802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.20822 -37.64526 -34.46897 -32.93329 -31.86370 -30.74723 -30.59431 -29.00674 -26.66413 -25.14494 -22.48834 -22.41174 -22.33284 -20.48944 -19.77864 -19.54003 -17.06542 -16.52273 -15.49319 -15.10755 -14.87839 -14.69628 -14.04683 -13.51735 -13.40655 -13.34254 -13.07960 -12.88146 -12.83506 -12.55878 -12.22176 -12.08677 -11.62624 -11.57291 -11.16992 -11.14917 -10.98159 -10.90888 -10.83068 -10.72158 -10.32043 -10.26486 -10.06487 -9.91347 -9.55153 -9.41824 -9.11069 -8.78653 -8.47249 -8.44869 -7.23962 -6.11205 -4.07982 1.52303 1.53632 3.27660 3.37223 3.40521 3.93711 4.41499 4.95684 5.00974 5.09208 5.15434 5.22932 5.24710 5.45449 5.52832 5.61500 5.69917 5.74727 5.79547 5.92868 6.01727 6.08580 6.12256 6.16542 6.22345 6.27605 6.34805 6.36794 6.42023 6.50398 6.56514 6.62008 6.62501 6.69723 6.74375 6.79454 6.88774 6.92928 6.95722 7.10310 7.17354 7.27532 7.40144 7.65461 8.14999 8.46443 8.56691 8.95736 9.56026 11.01522 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.005122 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.472258 B = 5465.267752 C = 6188.010042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.183 3.817 4 H 0.035 0.965 5 C -0.549 4.549 6 H 0.076 0.924 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.858 3.142 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.245 1.245 13 N -0.675 5.675 14 C 0.089 3.911 15 H 0.060 0.940 16 C -0.105 4.105 17 C -0.153 4.153 18 C -0.112 4.112 19 C -0.086 4.086 20 C -0.065 4.065 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.121 4.121 25 C -0.118 4.118 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.262 0.738 32 H 0.331 0.669 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.304 7.704 10.000 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.074 3.926 4 H 0.052 0.948 5 C -0.587 4.587 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.170 1.170 13 N -0.306 5.306 14 C -0.022 4.022 15 H 0.078 0.922 16 C -0.143 4.143 17 C -0.210 4.210 18 C -0.150 4.150 19 C -0.123 4.123 20 C -0.065 4.065 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.153 4.153 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.834 7.601 9.754 13.673 hybrid contribution 0.791 -0.048 -0.995 1.272 sum -5.043 7.552 8.759 12.617 Atomic orbital electron populations 1.21792 0.98135 0.99269 1.00968 1.21896 0.93284 0.99404 1.00724 1.19611 0.94032 0.90625 0.88315 0.94762 1.21830 0.90847 1.43455 1.02586 0.90603 1.24950 0.94591 0.94220 0.98776 1.69972 1.10784 1.44786 1.27652 0.87348 0.82485 0.78122 0.83559 1.20751 1.21707 1.16962 1.60818 1.58642 1.03407 1.07738 1.21470 0.94651 0.89619 0.96454 0.92226 1.21492 0.97025 0.98054 0.97758 1.21859 0.99009 1.02817 0.97308 1.21784 0.94557 1.00060 0.98616 1.20764 0.95903 1.01489 0.94149 1.20115 0.96529 0.94292 0.95589 1.21108 0.98626 0.95765 0.98283 1.21099 1.00124 0.99765 0.92962 1.21054 1.00791 0.95703 0.97779 1.21110 0.98666 0.95953 0.98155 1.21122 1.00081 1.00061 0.92307 0.91881 0.94448 0.95120 0.92785 0.93195 0.92842 0.85042 0.92307 0.93424 0.90954 0.94404 0.93467 0.91942 0.92330 0.90005 0.90464 0.86219 0.86526 0.86657 0.86463 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.76 37.15 0.33 -2.27 16 2 C -0.11 -2.42 4.89 -26.73 -0.13 -2.55 16 3 C 0.18 4.00 0.72 -68.86 -0.05 3.95 16 4 H 0.03 0.79 4.74 -51.93 -0.25 0.54 16 5 C -0.55 -14.25 8.54 -34.44 -0.29 -14.54 16 6 H 0.08 2.10 6.64 -52.49 -0.35 1.75 16 7 C 0.08 2.14 5.36 -17.82 -0.10 2.05 16 8 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 9 Si 0.86 20.75 25.83 -169.99 -4.39 16.36 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.25 -5.57 5.31 56.52 0.30 -5.27 16 13 N -0.68 -12.58 5.18 -100.95 -0.52 -13.10 16 14 C 0.09 1.51 2.01 -67.71 -0.14 1.38 16 15 H 0.06 1.19 7.33 -51.93 -0.38 0.81 16 16 C -0.10 -1.60 5.62 -26.73 -0.15 -1.75 16 17 C -0.15 -2.43 8.57 37.15 0.32 -2.11 16 18 C -0.11 -1.68 4.66 -26.73 -0.12 -1.80 16 19 C -0.09 -1.38 4.65 -27.88 -0.13 -1.51 16 20 C -0.07 -0.96 5.13 -104.63 -0.54 -1.50 16 21 C -0.12 -1.65 9.70 -39.58 -0.38 -2.03 16 22 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 23 C -0.14 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 25 C -0.12 -1.62 9.70 -39.59 -0.38 -2.00 16 26 H 0.06 1.10 7.39 -51.92 -0.38 0.71 16 27 H 0.04 0.66 7.64 -51.93 -0.40 0.27 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.22 4.69 -51.93 -0.24 0.98 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.33 6.25 6.36 -39.29 -0.25 6.00 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.24 4.92 -51.93 -0.26 0.98 16 36 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.45 5.76 -51.93 -0.30 1.15 16 41 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 42 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -28.04 349.98 -9.77 -37.81 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.94 Total: 9.89 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: -2.96 Total: -30.42 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.25 Total: -38.91 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.39 Total: 16.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.04 -9.77 -37.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664171428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.549 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds