Wall clock time and date at job start Mon Mar 30 2020 01:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36933 * 120.00397 * 2 1 4 4 H 1.08000 * 120.00601 * 205.12422 * 3 2 1 5 5 C 1.38809 * 119.99800 * 25.12262 * 3 2 1 6 6 N 1.31624 * 120.00210 * 10.34707 * 5 3 2 7 7 Si 1.86802 * 120.00151 * 190.34775 * 5 3 2 8 8 H 1.48499 * 109.47163 * 59.99926 * 7 5 3 9 9 H 1.48496 * 109.47241 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47125 * 300.00044 * 7 5 3 11 11 C 1.46499 * 119.99902 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47384 * 275.37562 * 11 2 1 13 13 C 1.36544 * 120.03976 * 99.60276 * 12 11 2 14 14 C 1.40772 * 118.17155 * 179.97438 * 13 12 11 15 15 C 1.40426 * 121.35392 * 179.97438 * 14 13 12 16 16 C 1.36150 * 119.61953 * 180.02562 * 15 14 13 17 17 C 1.39353 * 120.86456 * 359.63809 * 16 15 14 18 18 C 1.36082 * 121.06408 * 0.70130 * 17 16 15 19 19 C 1.40591 * 119.74983 * 359.34791 * 18 17 16 20 20 N 1.33682 * 121.06029 * 180.30159 * 19 18 17 21 21 C 1.31227 * 121.30412 * 179.97438 * 20 19 18 22 22 Cl 1.73596 * 119.14233 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.47223 * 266.44502 * 1 2 3 24 24 H 1.09004 * 109.47030 * 26.44688 * 1 2 3 25 25 H 1.08998 * 109.47412 * 146.44061 * 1 2 3 26 26 H 0.96998 * 119.99836 * 179.97438 * 6 5 3 27 27 H 1.08996 * 109.47508 * 155.37125 * 11 2 1 28 28 H 1.09003 * 109.47165 * 35.37053 * 11 2 1 29 29 H 1.07989 * 120.90923 * 359.96777 * 13 12 11 30 30 H 1.07997 * 120.19225 * 0.05210 * 15 14 13 31 31 H 1.07995 * 119.56761 * 179.97438 * 16 15 14 32 32 H 1.07997 * 119.46454 * 180.33136 * 17 16 15 33 33 H 1.07994 * 120.12559 * 179.63115 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1531 1.2301 -0.3971 5 6 1.5542 2.3311 0.5104 6 7 0.4219 2.2435 1.1758 7 14 2.3597 3.9968 0.2529 8 1 2.4760 4.2708 -1.2019 9 1 1.5313 5.0511 0.8910 10 1 3.7125 3.9924 0.8655 11 6 2.1974 -1.2687 -0.0006 12 6 2.3333 -1.7710 1.4138 13 6 1.4884 -2.7368 1.8803 14 6 1.6508 -3.1775 3.2074 15 6 0.8189 -4.1670 3.7557 16 6 1.0071 -4.5665 5.0436 17 6 2.0199 -4.0116 5.8235 18 6 2.8398 -3.0460 5.3263 19 6 2.6763 -2.6065 4.0009 20 7 3.4708 -1.6638 3.4839 21 6 3.3229 -1.2504 2.2473 22 17 4.3865 -0.0236 1.6331 23 1 -0.3634 -0.0637 1.0257 24 1 -0.3633 0.9202 -0.4577 25 1 -0.3634 -0.8563 -0.5681 26 1 0.0060 3.0438 1.5327 27 1 3.1881 -1.1162 -0.4287 28 1 1.6533 -2.0021 -0.5958 29 1 0.7167 -3.1511 1.2486 30 1 0.0345 -4.6089 3.1591 31 1 0.3665 -5.3273 5.4646 32 1 2.1524 -4.3491 6.8408 33 1 3.6160 -2.6222 5.9460 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972789.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:46 Heat of formation + Delta-G solvation = 72.723007 kcal Electronic energy + Delta-G solvation = -18807.542057 eV Core-core repulsion = 15859.838859 eV Total energy + Delta-G solvation = -2947.703198 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46965 -37.32344 -35.70235 -35.48551 -33.29439 -31.57653 -29.95264 -29.72700 -26.35977 -25.67453 -23.77175 -22.72536 -21.87381 -20.74995 -17.90245 -17.13062 -16.70650 -16.20165 -14.99170 -14.54013 -14.39124 -14.17128 -13.78585 -13.52588 -13.32160 -12.87367 -12.85304 -12.09418 -11.91581 -11.51558 -11.38528 -11.05144 -10.92983 -10.80019 -10.59122 -10.47408 -10.40507 -10.07815 -9.95560 -9.81548 -9.21357 -8.55395 -8.15072 -7.97190 -6.84290 -5.82879 -3.22574 0.65567 1.10630 2.29088 2.49944 3.13830 3.37140 3.41877 3.42540 4.35581 4.48372 4.71679 4.86031 5.01075 5.18855 5.24622 5.34223 5.39441 5.54870 5.58991 5.65241 6.00052 6.02556 6.22535 6.27890 6.41858 6.50774 6.56486 6.69322 6.76061 6.80559 7.07218 7.28145 7.61350 7.76506 8.13171 8.32059 9.14054 9.73875 10.23279 11.23108 Molecular weight = 276.07amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.006129 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.614276 B = 4567.100328 C = 4912.766339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.580 5.580 3 C -0.241 4.241 4 H 0.074 0.926 5 C 0.007 3.993 6 N -0.900 5.900 7 Si 0.900 3.100 8 H -0.282 1.282 9 H -0.289 1.289 10 H -0.280 1.280 11 C 0.177 3.823 12 C -0.120 4.120 13 C -0.068 4.068 14 C -0.096 4.096 15 C -0.096 4.096 16 C -0.125 4.125 17 C -0.115 4.115 18 C -0.089 4.089 19 C 0.128 3.872 20 N -0.486 5.486 21 C 0.239 3.761 22 Cl -0.011 7.011 23 H 0.018 0.982 24 H 0.061 0.939 25 H -0.003 1.003 26 H 0.255 0.745 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -12.493 3.654 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.299 5.299 3 C -0.371 4.371 4 H 0.091 0.909 5 C -0.193 4.193 6 N -0.543 5.543 7 Si 0.729 3.271 8 H -0.208 1.208 9 H -0.215 1.215 10 H -0.206 1.206 11 C 0.050 3.950 12 C -0.127 4.127 13 C -0.096 4.096 14 C -0.098 4.098 15 C -0.115 4.115 16 C -0.143 4.143 17 C -0.135 4.135 18 C -0.108 4.108 19 C 0.006 3.994 20 N -0.197 5.197 21 C 0.060 3.940 22 Cl 0.017 6.983 23 H 0.037 0.963 24 H 0.080 0.920 25 H 0.016 0.984 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.296 -11.857 4.222 12.794 hybrid contribution -0.285 0.880 -0.209 0.949 sum 2.012 -10.976 4.012 11.859 Atomic orbital electron populations 1.20849 0.82095 0.97520 0.97954 1.44256 1.02066 1.00244 1.83295 1.19237 0.99871 0.84933 1.33024 0.90850 1.25099 0.97738 0.98829 0.97605 1.70034 1.18844 1.28003 1.37468 0.86394 0.78972 0.83763 0.77945 1.20781 1.21514 1.20621 1.20126 0.97887 0.88900 0.88133 1.21653 0.93674 0.94240 1.03148 1.21146 0.98587 0.95935 0.93897 1.18856 0.97413 0.98441 0.95081 1.20923 0.98465 0.96348 0.95726 1.20806 0.98520 1.00613 0.94390 1.20752 0.95766 0.97092 0.99940 1.20717 0.99898 0.96935 0.93208 1.18580 0.92654 0.93583 0.94538 1.67341 1.27516 1.12585 1.12251 1.21820 0.91518 0.90940 0.89752 1.98414 1.64031 1.50884 1.84943 0.96324 0.91993 0.98437 0.93476 0.91426 0.92931 0.84430 0.85584 0.86040 0.85818 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 9.03 59.84 0.54 4.32 16 2 N -0.58 -13.86 2.90 -182.51 -0.53 -14.39 16 3 C -0.24 -6.25 7.75 -15.06 -0.12 -6.37 16 4 H 0.07 1.87 7.20 -52.49 -0.38 1.49 16 5 C 0.01 0.18 5.09 -17.43 -0.09 0.09 16 6 N -0.90 -25.73 10.75 55.49 0.60 -25.13 16 7 Si 0.90 21.65 29.57 -169.99 -5.03 16.63 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.18 3.52 5.39 -5.19 -0.03 3.49 16 12 C -0.12 -2.37 5.44 -104.78 -0.57 -2.94 16 13 C -0.07 -1.19 9.50 -39.24 -0.37 -1.56 16 14 C -0.10 -1.63 5.74 -106.80 -0.61 -2.25 16 15 C -0.10 -1.30 9.77 -39.51 -0.39 -1.68 16 16 C -0.13 -1.49 9.96 -39.92 -0.40 -1.89 16 17 C -0.12 -1.42 9.94 -39.94 -0.40 -1.82 16 18 C -0.09 -1.35 9.98 -39.47 -0.39 -1.74 16 19 C 0.13 2.37 6.60 -84.86 -0.56 1.81 16 20 N -0.49 -10.08 10.31 -8.10 -0.08 -10.16 16 21 C 0.24 5.07 7.26 -17.35 -0.13 4.94 16 22 Cl -0.01 -0.24 25.08 -51.86 -1.30 -1.54 16 23 H 0.02 0.48 7.79 -51.93 -0.40 0.07 16 24 H 0.06 1.58 6.82 -51.93 -0.35 1.23 16 25 H 0.00 -0.06 7.99 -51.93 -0.41 -0.47 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.07 1.31 7.14 -51.93 -0.37 0.94 16 28 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 29 H 0.14 2.01 8.05 -52.49 -0.42 1.59 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 294.77 15.07 4.44 4.44 Total: -1.00 -30.11 294.77 -8.99 -39.10 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -3.58 Total: -3.35 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.51 Total: -5.60 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.02 Total: -49.69 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.30 Total: -1.54 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.11 -8.99 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972789.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.823 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds