Wall clock time and date at job start Mon Mar 30 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29934 * 125.37911 * 2 1 4 4 C 1.36066 * 108.47836 * 179.97438 * 3 2 1 5 5 C 1.47414 * 126.44359 * 180.02562 * 4 3 2 6 6 O 1.21643 * 119.99592 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00393 * 0.02562 * 5 4 3 8 8 C 1.40546 * 119.99846 * 180.02562 * 7 5 4 9 9 C 1.40658 * 126.08746 * 359.95685 * 8 7 5 10 10 N 1.30907 * 108.39018 * 179.75401 * 9 8 7 11 11 N 1.40065 * 108.40671 * 0.43840 * 10 9 8 12 12 C 1.37320 * 126.06888 * 179.81754 * 11 10 9 13 13 H 1.08002 * 120.00430 * 179.69737 * 12 11 10 14 14 C 1.38992 * 119.99664 * 359.41613 * 12 11 10 15 15 N 1.31294 * 120.00157 * 0.27652 * 14 12 11 16 16 Si 1.86803 * 119.99838 * 180.27798 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00076 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00027 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99826 * 16 14 12 20 20 C 1.35688 * 126.08162 * 179.97438 * 8 7 5 21 21 C 1.36092 * 107.10349 * 0.25880 * 4 3 2 22 22 C 1.50703 * 126.52739 * 179.74051 * 21 4 3 23 23 O 1.34051 * 125.37736 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47674 * 90.02306 * 1 2 3 25 25 H 1.09000 * 109.46996 * 210.02417 * 1 2 3 26 26 H 1.09002 * 109.46929 * 330.01964 * 1 2 3 27 27 H 0.96997 * 119.99841 * 359.97438 * 7 5 4 28 28 H 1.08004 * 125.80714 * 0.03837 * 9 8 7 29 29 H 0.96996 * 120.00263 * 179.97438 * 15 14 12 30 30 H 1.08003 * 126.24809 * 359.97438 * 20 8 7 31 31 H 1.08995 * 109.47524 * 89.99834 * 22 21 4 32 32 H 1.08998 * 109.47487 * 210.00796 * 22 21 4 33 33 H 1.09003 * 109.47166 * 330.00287 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7438 1.5439 0.0013 6 8 5.8606 1.0618 0.0013 7 7 4.5877 2.8826 0.0020 8 6 5.7153 3.7216 0.0021 9 6 7.0585 3.3042 0.0025 10 7 7.8215 4.3679 -0.0028 11 7 6.9994 5.5019 0.0034 12 6 7.4236 6.8079 0.0042 13 1 6.7008 7.6105 0.0043 14 6 8.7831 7.0970 0.0107 15 7 9.6617 6.1214 0.0106 16 14 9.3601 8.8737 0.0196 17 1 9.5074 9.3393 1.4220 18 1 10.6690 8.9725 -0.6749 19 1 8.3626 9.7216 -0.6814 20 6 5.7018 5.0784 0.0023 21 6 3.5660 -0.6971 -0.0049 22 6 4.7802 -1.5897 -0.0120 23 8 2.2831 -1.0930 0.0005 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 3.6971 3.2670 0.0016 28 1 7.4020 2.2802 0.0021 29 1 10.6105 6.3232 0.0148 30 1 4.8245 5.7083 0.0019 31 1 5.0759 -1.8091 1.0139 32 1 4.5444 -2.5199 -0.5290 33 1 5.5987 -1.0858 -0.5261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814679975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:35 Heat of formation + Delta-G solvation = 68.460464 kcal Electronic energy + Delta-G solvation = -20275.629422 eV Core-core repulsion = 16919.324973 eV Total energy + Delta-G solvation = -3356.304449 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.44422 -39.82001 -38.43454 -34.92386 -34.22174 -33.08229 -33.05365 -30.26311 -30.17295 -27.98769 -26.21242 -24.79481 -23.21889 -21.62991 -20.90177 -20.05137 -19.36366 -17.84519 -17.08555 -17.04207 -15.73670 -15.40480 -15.18238 -14.44948 -14.40463 -14.12699 -13.86614 -13.63058 -13.21505 -13.12085 -12.87903 -12.84924 -12.80920 -12.34000 -11.66168 -11.39533 -11.31672 -11.19661 -10.94202 -10.76152 -10.51789 -10.13553 -9.36506 -9.14705 -8.79426 -8.75932 -8.03461 -6.65873 -6.53746 -4.20193 1.13502 2.03928 2.42500 2.97154 3.06709 3.11848 3.39058 3.52328 3.81482 3.82002 3.96692 4.48981 4.59957 4.74236 4.95514 5.04465 5.08829 5.12782 5.25999 5.29550 5.46373 5.54725 5.84330 6.02922 6.13344 6.29060 6.49818 6.92284 6.97706 7.13125 7.25582 7.49322 7.88192 8.21867 8.31326 8.63952 8.86247 9.39938 9.68996 10.42307 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.043400 B = 0.003532 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.004341 B = 7925.022955 C = 8549.567568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.184 3.816 3 N -0.460 5.460 4 C -0.061 4.061 5 C 0.583 3.417 6 O -0.533 6.533 7 N -0.602 5.602 8 C -0.061 4.061 9 C -0.031 4.031 10 N -0.260 5.260 11 N -0.142 5.142 12 C -0.323 4.323 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.770 5.770 16 Si 0.935 3.065 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.080 4.080 21 C 0.031 3.969 22 C -0.074 4.074 23 O -0.201 6.201 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.405 0.595 28 H 0.177 0.823 29 H 0.275 0.725 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -10.527 -0.041 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.025 4.025 3 N -0.190 5.190 4 C -0.181 4.181 5 C 0.368 3.632 6 O -0.411 6.411 7 N -0.243 5.243 8 C -0.167 4.167 9 C -0.207 4.207 10 N -0.091 5.091 11 N 0.090 4.910 12 C -0.455 4.455 13 H 0.134 0.866 14 C -0.171 4.171 15 N -0.396 5.396 16 Si 0.759 3.241 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.231 4.231 21 C -0.025 4.025 22 C -0.130 4.130 23 O -0.089 6.089 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.239 0.761 28 H 0.194 0.806 29 H 0.085 0.915 30 H 0.164 0.836 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.927 -9.846 -0.047 16.250 hybrid contribution -1.045 0.070 0.029 1.048 sum -13.972 -9.776 -0.018 17.053 Atomic orbital electron populations 1.20258 0.81052 1.05146 1.04716 1.26148 0.96409 0.78445 1.01480 1.70738 1.00985 1.29989 1.17332 1.21618 0.91943 0.92410 1.12120 1.16491 0.85972 0.81550 0.79164 1.90669 1.23761 1.74794 1.51881 1.42265 1.08445 1.04353 1.69210 1.17282 0.86817 0.88660 1.23904 1.24121 0.89444 0.99262 1.07844 1.78246 1.15751 0.89404 1.25719 1.44551 1.01774 1.05562 1.39074 1.19886 0.92990 0.79242 1.53382 0.86587 1.25645 0.95686 1.00284 0.95489 1.70216 1.02241 1.31848 1.35340 0.85822 0.78780 0.80549 0.78959 1.19599 1.20097 1.18800 1.21269 0.89255 0.92944 1.19671 1.23691 0.83622 0.94582 1.00579 1.20586 0.90363 0.97449 1.04619 1.84291 1.16523 1.37909 1.70162 0.88916 0.89390 0.87978 0.76065 0.80606 0.91475 0.83579 0.89141 0.90504 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.34 10.51 36.00 0.38 0.04 16 2 C 0.18 2.18 8.30 -13.08 -0.11 2.07 16 3 N -0.46 -6.86 11.06 -7.66 -0.08 -6.94 16 4 C -0.06 -1.00 6.99 -83.02 -0.58 -1.59 16 5 C 0.58 11.48 7.78 -12.52 -0.10 11.38 16 6 O -0.53 -11.48 11.95 5.24 0.06 -11.42 16 7 N -0.60 -12.15 5.46 -10.97 -0.06 -12.21 16 8 C -0.06 -1.48 6.90 -83.86 -0.58 -2.06 16 9 C -0.03 -0.84 10.85 -17.03 -0.18 -1.02 16 10 N -0.26 -7.68 10.40 30.80 0.32 -7.36 16 11 N -0.14 -3.98 3.74 -11.41 -0.04 -4.02 16 12 C -0.32 -8.67 10.25 -14.81 -0.15 -8.82 16 13 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 14 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 15 N -0.77 -21.69 11.81 55.50 0.66 -21.03 16 16 Si 0.94 19.10 29.55 -169.99 -5.02 14.08 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 C -0.08 -1.97 11.49 -16.39 -0.19 -2.15 16 21 C 0.03 0.44 7.44 -35.08 -0.26 0.18 16 22 C -0.07 -0.84 9.87 36.01 0.36 -0.48 16 23 O -0.20 -2.54 10.73 6.49 0.07 -2.47 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.41 7.11 8.55 -40.82 -0.35 6.76 16 28 H 0.18 4.60 5.91 -52.48 -0.31 4.29 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.15 3.02 8.06 -52.48 -0.42 2.59 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.52 6.49 -51.93 -0.34 1.18 16 LS Contribution 297.77 15.07 4.49 4.49 Total: -1.00 -34.23 297.77 -4.21 -38.44 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.08 Total: 9.80 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.51 Total: -1.35 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.79 Total: -51.56 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.13 Total: -13.90 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.23 -4.21 -38.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.900 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds