Wall clock time and date at job start Mon Mar 30 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29934 * 125.37911 * 2 1 4 4 C 1.36066 * 108.47836 * 179.97438 * 3 2 1 5 5 C 1.47414 * 126.44359 * 180.02562 * 4 3 2 6 6 O 1.21643 * 119.99592 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00393 * 0.02562 * 5 4 3 8 8 C 1.40546 * 119.99846 * 180.02562 * 7 5 4 9 9 C 1.40658 * 126.08746 * 359.95685 * 8 7 5 10 10 N 1.30907 * 108.39018 * 179.75401 * 9 8 7 11 11 N 1.40065 * 108.40671 * 0.43840 * 10 9 8 12 12 C 1.37320 * 126.06888 * 179.81754 * 11 10 9 13 13 H 1.08002 * 120.00430 * 179.69737 * 12 11 10 14 14 C 1.38992 * 119.99664 * 359.41613 * 12 11 10 15 15 N 1.31294 * 120.00157 * 0.27652 * 14 12 11 16 16 Si 1.86803 * 119.99838 * 180.27798 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00076 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00027 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99826 * 16 14 12 20 20 C 1.35688 * 126.08162 * 179.97438 * 8 7 5 21 21 C 1.36092 * 107.10349 * 0.25880 * 4 3 2 22 22 C 1.50703 * 126.52739 * 179.74051 * 21 4 3 23 23 O 1.34051 * 125.37736 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47674 * 90.02306 * 1 2 3 25 25 H 1.09000 * 109.46996 * 210.02417 * 1 2 3 26 26 H 1.09002 * 109.46929 * 330.01964 * 1 2 3 27 27 H 0.96997 * 119.99841 * 359.97438 * 7 5 4 28 28 H 1.08004 * 125.80714 * 0.03837 * 9 8 7 29 29 H 0.96996 * 120.00263 * 179.97438 * 15 14 12 30 30 H 1.08003 * 126.24809 * 359.97438 * 20 8 7 31 31 H 1.08995 * 109.47524 * 89.99834 * 22 21 4 32 32 H 1.08998 * 109.47487 * 210.00796 * 22 21 4 33 33 H 1.09003 * 109.47166 * 330.00287 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7438 1.5439 0.0013 6 8 5.8606 1.0618 0.0013 7 7 4.5877 2.8826 0.0020 8 6 5.7153 3.7216 0.0021 9 6 7.0585 3.3042 0.0025 10 7 7.8215 4.3679 -0.0028 11 7 6.9994 5.5019 0.0034 12 6 7.4236 6.8079 0.0042 13 1 6.7008 7.6105 0.0043 14 6 8.7831 7.0970 0.0107 15 7 9.6617 6.1214 0.0106 16 14 9.3601 8.8737 0.0196 17 1 9.5074 9.3393 1.4220 18 1 10.6690 8.9725 -0.6749 19 1 8.3626 9.7216 -0.6814 20 6 5.7018 5.0784 0.0023 21 6 3.5660 -0.6971 -0.0049 22 6 4.7802 -1.5897 -0.0120 23 8 2.2831 -1.0930 0.0005 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 3.6971 3.2670 0.0016 28 1 7.4020 2.2802 0.0021 29 1 10.6105 6.3232 0.0148 30 1 4.8245 5.7083 0.0019 31 1 5.0759 -1.8091 1.0139 32 1 4.5444 -2.5199 -0.5290 33 1 5.5987 -1.0858 -0.5261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814679975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:34 Heat of formation + Delta-G solvation = 41.812036 kcal Electronic energy + Delta-G solvation = -20276.784985 eV Core-core repulsion = 16919.324973 eV Total energy + Delta-G solvation = -3357.460012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.49410 -41.71520 -40.14387 -36.11993 -35.90076 -34.93303 -34.03493 -32.26228 -30.97490 -29.81778 -27.57916 -26.52141 -24.45125 -22.99516 -22.62869 -21.41266 -21.24858 -19.51882 -18.62755 -18.11443 -17.45820 -17.03786 -16.68185 -16.09108 -15.87108 -15.31778 -15.14969 -15.07818 -14.84826 -14.41416 -14.27814 -13.55749 -13.51464 -13.48632 -13.29861 -13.15048 -12.92517 -12.86041 -12.37237 -12.07996 -11.88468 -11.84801 -11.03881 -11.00114 -10.83519 -10.12350 -9.83492 -8.56684 -8.47865 -6.25342 -0.00630 0.90369 1.30515 1.39969 1.44503 1.58484 1.72747 1.99840 2.06043 2.23157 2.59351 2.76890 3.02614 3.08135 3.58056 3.77842 4.15416 4.32380 4.40991 4.56222 4.57608 4.68855 4.69259 4.78711 4.90259 4.98545 5.04660 5.11833 5.26190 5.27289 5.41132 5.93471 6.25528 6.40111 6.67830 6.71652 7.22331 7.43138 7.64552 8.51622 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.043400 B = 0.003532 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.004341 B = 7925.022955 C = 8549.567568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.199 3.801 3 N -0.488 5.488 4 C -0.096 4.096 5 C 0.583 3.417 6 O -0.557 6.557 7 N -0.601 5.601 8 C -0.050 4.050 9 C -0.053 4.053 10 N -0.307 5.307 11 N -0.165 5.165 12 C -0.355 4.355 13 H 0.141 0.859 14 C -0.006 4.006 15 N -0.822 5.822 16 Si 1.021 2.979 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.245 1.245 20 C -0.080 4.080 21 C 0.044 3.956 22 C -0.074 4.074 23 O -0.196 6.196 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.418 0.582 28 H 0.174 0.826 29 H 0.277 0.723 30 H 0.185 0.815 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.612 -10.434 -0.038 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.010 4.010 3 N -0.218 5.218 4 C -0.214 4.214 5 C 0.371 3.629 6 O -0.437 6.437 7 N -0.244 5.244 8 C -0.156 4.156 9 C -0.229 4.229 10 N -0.139 5.139 11 N 0.066 4.934 12 C -0.486 4.486 13 H 0.158 0.842 14 C -0.218 4.218 15 N -0.450 5.450 16 Si 0.840 3.160 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.168 1.168 20 C -0.230 4.230 21 C -0.013 4.013 22 C -0.130 4.130 23 O -0.083 6.083 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.255 0.745 28 H 0.191 0.809 29 H 0.087 0.913 30 H 0.202 0.798 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.645 -9.766 -0.045 18.443 hybrid contribution -0.407 -0.151 0.027 0.435 sum -16.051 -9.917 -0.017 18.868 Atomic orbital electron populations 1.20641 0.76983 1.06935 1.06582 1.27336 0.98093 0.77386 0.98180 1.70701 1.00386 1.31398 1.19360 1.21195 0.91765 0.92832 1.15627 1.16971 0.86834 0.81508 0.77610 1.90649 1.25265 1.75226 1.52528 1.42207 1.07865 1.04373 1.69956 1.17361 0.87108 0.89207 1.21937 1.24204 0.90862 0.98830 1.08965 1.78142 1.17644 0.90601 1.27490 1.44849 1.02679 1.05693 1.40129 1.20658 0.94354 0.79522 1.54062 0.84178 1.26906 0.95342 1.05502 0.94033 1.70391 1.02734 1.34902 1.36995 0.84564 0.78247 0.73930 0.79268 1.18845 1.20068 1.16772 1.21934 0.89436 0.93539 1.18140 1.24045 0.84831 0.94055 0.98401 1.20665 0.88716 0.98084 1.05527 1.84348 1.15845 1.38084 1.70059 0.86799 0.86763 0.86950 0.74518 0.80940 0.91277 0.79770 0.87919 0.87242 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.47 10.51 71.24 0.75 0.28 16 2 C 0.20 4.19 8.30 88.39 0.73 4.92 16 3 N -0.49 -13.86 11.06 -293.04 -3.24 -17.10 16 4 C -0.10 -3.12 6.99 40.41 0.28 -2.84 16 5 C 0.58 23.33 7.78 86.66 0.67 24.00 16 6 O -0.56 -24.84 11.95 -4.17 -0.05 -24.89 16 7 N -0.60 -24.41 5.46 -306.86 -1.68 -26.08 16 8 C -0.05 -2.47 6.90 37.74 0.26 -2.21 16 9 C -0.05 -3.00 10.85 85.42 0.93 -2.07 16 10 N -0.31 -18.89 10.40 -56.46 -0.59 -19.47 16 11 N -0.16 -9.43 3.74 -190.00 -0.71 -10.14 16 12 C -0.35 -19.18 10.25 84.01 0.86 -18.32 16 13 H 0.14 6.58 7.83 -2.91 -0.02 6.56 16 14 C -0.01 -0.32 5.50 84.95 0.47 0.15 16 15 N -0.82 -47.89 11.81 21.66 0.26 -47.64 16 16 Si 1.02 38.97 29.55 68.60 2.03 41.00 16 17 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 18 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.24 -8.48 7.11 99.48 0.71 -7.78 16 20 C -0.08 -3.92 11.49 83.38 0.96 -2.96 16 21 C 0.04 1.17 7.44 25.19 0.19 1.36 16 22 C -0.07 -1.59 9.87 71.24 0.70 -0.88 16 23 O -0.20 -4.43 10.73 0.32 0.00 -4.43 16 24 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.42 14.50 8.55 -92.71 -0.79 13.70 16 28 H 0.17 9.56 5.91 -2.91 -0.02 9.55 16 29 H 0.28 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.19 7.30 8.06 -2.91 -0.02 7.28 16 31 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 2.50 6.49 -2.39 -0.02 2.49 16 Total: -1.00 -77.98 297.77 3.21 -74.77 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.38 Total: 32.54 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 6.80 Total: 1.43 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -5.96 Total: -120.43 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.31 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -77.98 3.21 -74.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814679975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.585 kcal (2) G-P(sol) polarization free energy of solvation -77.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds