Wall clock time and date at job start Mon Mar 30 2020 01:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46504 * 119.99395 * 2 1 4 4 C 1.50697 * 109.47507 * 269.99848 * 3 2 1 5 5 H 1.08002 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00140 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99948 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00048 * 0.02562 * 6 4 3 9 9 H 1.48507 * 109.46948 * 89.99794 * 8 6 4 10 10 H 1.48495 * 109.47296 * 209.99891 * 8 6 4 11 11 H 1.48502 * 109.47303 * 330.00239 * 8 6 4 12 12 C 1.34772 * 120.00177 * 180.02562 * 2 1 3 13 13 O 1.21652 * 119.99988 * 180.94917 * 12 2 1 14 14 C 1.47055 * 119.99911 * 0.94501 * 12 2 1 15 15 C 1.35878 * 125.42926 * 167.75695 * 14 12 2 16 16 C 1.41583 * 107.74129 * 180.02562 * 15 14 12 17 17 C 1.40123 * 133.34728 * 180.29505 * 16 15 14 18 18 C 1.36603 * 119.81337 * 180.16983 * 17 16 15 19 19 F 1.35105 * 119.72360 * 179.77344 * 18 17 16 20 20 C 1.39128 * 120.56060 * 359.49887 * 18 17 16 21 21 C 1.37658 * 120.62754 * 0.25590 * 20 18 17 22 22 C 1.39215 * 119.84269 * 359.97438 * 21 20 18 23 23 N 1.37574 * 133.15472 * 180.02562 * 22 21 20 24 24 H 0.96998 * 125.61219 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46657 * 263.60891 * 1 2 3 26 26 H 1.08993 * 109.47115 * 23.61262 * 1 2 3 27 27 H 1.09001 * 109.46830 * 143.61006 * 1 2 3 28 28 H 1.08991 * 109.47224 * 30.00615 * 3 2 1 29 29 H 1.09007 * 109.46554 * 150.00243 * 3 2 1 30 30 H 0.96999 * 119.99596 * 179.97438 * 7 6 4 31 31 H 1.07999 * 126.12585 * 359.97438 * 15 14 12 32 32 H 1.08010 * 120.09515 * 359.94203 * 17 16 15 33 33 H 1.08007 * 119.68557 * 180.27283 * 20 18 17 34 34 H 1.07999 * 120.08139 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7040 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1268 2.8777 -1.6726 7 7 3.3455 3.2576 -2.9126 8 14 3.7348 3.9282 -0.2528 9 1 5.1082 3.5060 0.1227 10 1 3.7506 5.3550 -0.6640 11 1 2.8291 3.7587 0.9118 12 6 2.1390 -1.1671 -0.0005 13 8 3.3554 -1.1672 0.0169 14 6 1.4039 -2.4406 -0.0221 15 6 1.9504 -3.6617 -0.2597 16 6 0.9107 -4.6203 -0.1923 17 6 0.8750 -6.0128 -0.3439 18 6 -0.3113 -6.6791 -0.2221 19 9 -0.3444 -8.0213 -0.3733 20 6 -1.4849 -5.9879 0.0619 21 6 -1.4727 -4.6205 0.2200 22 6 -0.2764 -3.9194 0.0957 23 7 0.0477 -2.5862 0.1964 24 1 -0.5740 -1.8667 0.3881 25 1 -0.3633 -0.1144 1.0213 26 1 -0.3633 0.9416 -0.4116 27 1 -0.3633 -0.8273 -0.6097 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1385 0.5138 30 1 3.8223 4.0836 -3.0897 31 1 2.9913 -3.8645 -0.4643 32 1 1.7823 -6.5575 -0.5602 33 1 -2.4143 -6.5295 0.1595 34 1 -2.3890 -4.0928 0.4399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005348794.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:53 Heat of formation + Delta-G solvation = -17.531002 kcal Electronic energy + Delta-G solvation = -20356.925070 eV Core-core repulsion = 16976.971789 eV Total energy + Delta-G solvation = -3379.953280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.77136 -42.79786 -40.46475 -37.61124 -36.92524 -34.76090 -33.34373 -31.27348 -30.26177 -29.63445 -27.77197 -25.74466 -23.80672 -23.10056 -22.05695 -20.96298 -19.18616 -18.73040 -18.68662 -17.90993 -17.21268 -16.73779 -16.62768 -16.46281 -16.09314 -15.49481 -15.08796 -14.91278 -14.81391 -14.47629 -14.22104 -14.06448 -14.05026 -13.71707 -13.60951 -13.19462 -12.87060 -12.46489 -12.26867 -12.05170 -11.93988 -11.77470 -11.17545 -11.03686 -10.85019 -9.67759 -9.21945 -8.87109 -8.35858 -6.42751 -0.37930 0.37934 0.99715 1.33454 1.38431 1.45921 1.76192 2.04142 2.30048 2.33201 2.68236 2.98461 3.26712 3.49405 3.60351 3.95437 3.98272 4.10081 4.28265 4.33152 4.36263 4.56888 4.69544 4.73412 4.84088 4.86889 4.98859 5.18536 5.20700 5.33874 5.40491 5.48081 5.53485 5.95451 6.17792 6.34080 6.42534 6.59270 7.04635 7.23189 8.81022 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.043411 B = 0.003685 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.845908 B = 7596.820321 C = 7812.985877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.597 5.597 3 C 0.223 3.777 4 C -0.543 4.543 5 H 0.027 0.973 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.233 1.233 12 C 0.565 3.435 13 O -0.571 6.571 14 C 0.027 3.973 15 C -0.127 4.127 16 C -0.112 4.112 17 C -0.109 4.109 18 C 0.060 3.940 19 F -0.148 7.148 20 C -0.117 4.117 21 C -0.088 4.088 22 C 0.091 3.909 23 N -0.564 5.564 24 H 0.437 0.563 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.269 0.731 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.171 0.829 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 -15.344 10.141 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.327 5.327 3 C 0.101 3.899 4 C -0.581 4.581 5 H 0.046 0.954 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.156 1.156 12 C 0.353 3.647 13 O -0.451 6.451 14 C -0.084 4.084 15 C -0.154 4.154 16 C -0.117 4.117 17 C -0.128 4.128 18 C 0.040 3.960 19 F -0.127 7.127 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.019 4.019 23 N -0.178 5.178 24 H 0.287 0.713 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.188 0.812 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.103 -15.007 10.086 22.931 hybrid contribution 0.746 0.768 -0.234 1.096 sum -13.358 -14.239 9.852 21.869 Atomic orbital electron populations 1.22461 0.78185 1.05169 1.03235 1.47842 1.08292 1.05904 1.70658 1.19492 0.93124 0.81604 0.95656 1.21528 1.37364 1.06951 0.92263 0.95420 1.25874 0.95110 0.98920 0.98725 1.70052 1.42425 1.24474 1.21439 0.85691 0.79686 0.77641 0.79784 1.20218 1.20096 1.15580 1.17690 0.86657 0.83139 0.77214 1.90786 1.14686 1.87155 1.52447 1.19931 0.84136 0.94206 1.10119 1.20966 0.99835 0.89800 1.04847 1.17952 0.93198 0.93156 1.07414 1.20389 0.98380 0.92342 1.01729 1.17214 0.95073 0.77185 1.06527 1.91478 1.97340 1.30097 1.93796 1.21181 0.97983 0.93869 1.00613 1.20288 0.95518 0.92907 1.02058 1.18779 0.96139 0.83785 1.03231 1.43103 1.06789 1.07555 1.60326 0.71256 0.88585 0.88982 0.89981 0.91973 0.95678 0.92164 0.83284 0.83954 0.81192 0.81083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.30 8.86 127.77 1.13 2.43 16 2 N -0.60 -23.30 2.86 -855.46 -2.44 -25.74 16 3 C 0.22 10.39 4.21 85.63 0.36 10.75 16 4 C -0.54 -31.24 9.94 25.60 0.25 -30.99 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 6 C 0.01 0.70 5.47 84.65 0.46 1.16 16 7 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 8 Si 0.95 43.04 27.47 68.60 1.88 44.93 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.23 -9.23 6.54 99.48 0.65 -8.58 16 12 C 0.56 23.47 7.64 86.56 0.66 24.13 16 13 O -0.57 -29.04 16.44 -4.20 -0.07 -29.11 16 14 C 0.03 0.86 6.56 39.92 0.26 1.13 16 15 C -0.13 -3.98 10.55 22.55 0.24 -3.74 16 16 C -0.11 -2.92 6.16 -21.36 -0.13 -3.05 16 17 C -0.11 -2.46 10.03 22.34 0.22 -2.23 16 18 C 0.06 1.20 7.24 22.10 0.16 1.36 16 19 F -0.15 -3.11 17.25 44.97 0.78 -2.33 16 20 C -0.12 -1.71 9.99 22.35 0.22 -1.49 16 21 C -0.09 -1.27 10.07 22.37 0.23 -1.04 16 22 C 0.09 1.98 7.25 39.11 0.28 2.26 16 23 N -0.56 -12.95 5.08 -177.15 -0.90 -13.85 16 24 H 0.44 7.30 4.91 -92.71 -0.45 6.85 16 25 H 0.10 1.60 7.66 -2.39 -0.02 1.58 16 26 H 0.09 2.36 8.02 -2.39 -0.02 2.35 16 27 H 0.08 1.80 5.23 -2.39 -0.01 1.79 16 28 H 0.06 2.56 7.13 -2.39 -0.02 2.54 16 29 H 0.03 1.26 6.83 -2.38 -0.02 1.24 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.15 4.71 8.06 -2.91 -0.02 4.69 16 32 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -77.50 296.17 4.54 -72.96 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.64 Total: 11.13 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 4.36 Total: 0.69 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.05 Total: -98.26 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.07 Total: -29.11 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.93 kcal Total: -77.50 4.54 -72.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005348794.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.428 kcal (2) G-P(sol) polarization free energy of solvation -77.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds