Wall clock time and date at job start Mon Mar 30 2020 01:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46986 * 2 1 4 4 C 1.36818 * 119.99679 * 261.86275 * 3 2 1 5 5 H 1.08004 * 119.99472 * 196.34677 * 4 3 2 6 6 C 1.39044 * 120.00455 * 16.34169 * 4 3 2 7 7 N 1.31374 * 119.99927 * 12.66388 * 6 4 3 8 8 Si 1.86801 * 120.00481 * 192.65992 * 6 4 3 9 9 H 1.48500 * 109.47253 * 89.99997 * 8 6 4 10 10 H 1.48492 * 109.47567 * 210.00577 * 8 6 4 11 11 H 1.48508 * 109.47112 * 330.00512 * 8 6 4 12 12 C 1.34775 * 120.00211 * 81.86025 * 3 2 1 13 13 O 1.21706 * 120.00204 * 181.69562 * 12 3 2 14 14 C 1.46837 * 119.99687 * 1.69479 * 12 3 2 15 15 C 1.36032 * 125.44837 * 169.98288 * 14 12 3 16 16 C 1.41476 * 107.73407 * 179.97438 * 15 14 12 17 17 C 1.40884 * 107.01613 * 359.97438 * 16 15 14 18 18 C 1.39135 * 119.54055 * 179.97438 * 17 16 15 19 19 C 1.37741 * 120.01107 * 0.03084 * 18 17 16 20 20 C 1.38834 * 120.69186 * 359.94878 * 19 18 17 21 21 C 1.37727 * 120.44122 * 0.29931 * 20 19 18 22 22 F 1.35103 * 120.17471 * 179.69818 * 21 20 19 23 23 N 1.37564 * 107.38133 * 0.02562 * 17 16 15 24 24 H 0.97001 * 125.61473 * 179.97438 * 23 17 16 25 25 H 1.08993 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47143 * 300.00193 * 1 2 3 27 27 H 1.09001 * 109.47314 * 59.99839 * 1 2 3 28 28 H 1.09004 * 109.47336 * 240.00487 * 2 1 3 29 29 H 1.08994 * 109.47322 * 119.99476 * 2 1 3 30 30 H 0.97000 * 119.99552 * 179.97438 * 7 6 4 31 31 H 1.08001 * 126.13168 * 0.02562 * 15 14 12 32 32 H 1.08002 * 119.99455 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.65611 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.78592 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4045 1.9703 -1.1730 5 1 3.0018 2.8699 -1.1544 6 6 2.0280 1.4107 -2.3889 7 7 1.1071 0.4745 -2.4241 8 14 2.8316 1.9901 -3.9726 9 1 4.0348 1.1644 -4.2481 10 1 1.8693 1.8528 -5.0951 11 1 3.2299 3.4140 -3.8334 12 6 2.0872 2.0718 1.1554 13 8 2.4635 3.2291 1.1512 14 6 1.7080 1.4276 2.4193 15 6 1.9131 1.9443 3.6608 16 6 1.4058 1.0182 4.6023 17 6 0.8896 -0.0708 3.8725 18 6 0.3205 -1.1436 4.5514 19 6 0.2639 -1.1360 5.9277 20 6 0.7714 -0.0658 6.6519 21 6 1.3353 1.0107 6.0037 22 9 1.8220 2.0520 6.7136 23 7 1.0847 0.1996 2.5378 24 1 0.8274 -0.3768 1.8012 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 0.8443 0.0844 -3.2724 31 1 2.3790 2.8920 3.8871 32 1 -0.0771 -1.9823 3.9993 33 1 -0.1795 -1.9716 6.4489 34 1 0.7198 -0.0754 7.7306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:01 Heat of formation + Delta-G solvation = 17.687650 kcal Electronic energy + Delta-G solvation = -21176.500155 eV Core-core repulsion = 17798.074070 eV Total energy + Delta-G solvation = -3378.426085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.61203 -41.34031 -38.59452 -36.32070 -35.54823 -32.38790 -31.44764 -30.11473 -29.13006 -28.37749 -25.54089 -23.28037 -22.51295 -22.02113 -20.81636 -19.52728 -17.87820 -17.36557 -16.87576 -15.71746 -15.53607 -15.44592 -15.18944 -14.83806 -14.45188 -14.16262 -13.77700 -13.41197 -13.31619 -12.77452 -12.65856 -12.34008 -12.04027 -11.66221 -11.42151 -11.33551 -11.28410 -11.14824 -11.07194 -10.48406 -10.46132 -10.24959 -9.50400 -9.20984 -8.81808 -8.09409 -8.02166 -7.39397 -6.56151 -4.07669 0.97158 1.63743 2.53997 3.08036 3.13120 3.18200 3.34836 3.86077 3.92015 4.16078 4.44134 4.55115 4.90640 4.91728 5.02296 5.26650 5.31716 5.42159 5.59222 5.73350 5.86174 6.10475 6.17466 6.17943 6.19168 6.33206 6.41809 6.49674 6.83344 6.90361 6.96676 7.21081 7.25216 7.46268 7.68780 7.87657 8.24854 8.90690 9.10469 9.67870 10.40849 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.004885 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.715085 B = 5729.945497 C = 6427.988356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.425 5.425 4 C -0.295 4.295 5 H 0.109 0.891 6 C 0.027 3.973 7 N -0.872 5.872 8 Si 0.935 3.065 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.491 3.509 13 O -0.572 6.572 14 C 0.074 3.926 15 C -0.148 4.148 16 C -0.139 4.139 17 C 0.112 3.888 18 C -0.136 4.136 19 C -0.083 4.083 20 C -0.188 4.188 21 C 0.142 3.858 22 F -0.139 7.139 23 N -0.581 5.581 24 H 0.434 0.566 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.037 0.963 30 H 0.271 0.729 31 H 0.152 0.848 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 -7.351 9.536 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.142 5.142 4 C -0.423 4.423 5 H 0.127 0.873 6 C -0.176 4.176 7 N -0.512 5.512 8 Si 0.762 3.238 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.191 1.191 12 C 0.279 3.721 13 O -0.456 6.456 14 C -0.037 4.037 15 C -0.174 4.174 16 C -0.145 4.145 17 C 0.001 3.999 18 C -0.157 4.157 19 C -0.102 4.102 20 C -0.209 4.209 21 C 0.122 3.878 22 F -0.118 7.118 23 N -0.197 5.197 24 H 0.286 0.714 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.747 -6.921 9.128 11.780 hybrid contribution 0.131 -0.053 -0.930 0.941 sum -2.616 -6.973 8.198 11.076 Atomic orbital electron populations 1.22456 0.96223 1.00809 1.03438 1.21928 0.94654 0.84504 1.01525 1.43723 1.53627 1.10667 1.06143 1.19883 1.29745 1.10987 0.81697 0.87349 1.25399 0.95603 0.96745 0.99810 1.69952 1.27179 1.26949 1.27131 0.85758 0.78678 0.79573 0.79827 1.20156 1.20742 1.19139 1.16909 0.86800 0.86321 0.82027 1.90689 1.53193 1.16150 1.85538 1.20868 1.00302 0.86018 0.96481 1.20635 1.06750 1.00821 0.89155 1.18136 1.07116 0.97551 0.91720 1.18240 1.01165 0.96122 0.84385 1.20046 1.04176 0.97332 0.94128 1.20498 0.99385 0.97780 0.92564 1.20703 1.05387 0.94490 1.00292 1.17183 0.98038 0.85388 0.87228 1.91459 1.85655 1.56492 1.78179 1.44119 1.50811 1.18433 1.06303 0.71377 0.93375 0.94917 0.87505 0.86195 0.94524 0.91802 0.83053 0.85799 0.85108 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 8.29 37.16 0.31 -2.94 16 2 C 0.10 2.02 4.80 -4.04 -0.02 2.00 16 3 N -0.42 -10.42 2.64 -116.24 -0.31 -10.72 16 4 C -0.30 -7.72 9.40 -15.03 -0.14 -7.86 16 5 H 0.11 2.99 7.32 -52.48 -0.38 2.60 16 6 C 0.03 0.66 5.11 -17.45 -0.09 0.57 16 7 N -0.87 -20.49 8.19 55.50 0.45 -20.03 16 8 Si 0.94 19.28 29.57 -169.99 -5.03 14.25 16 9 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 C 0.49 12.23 7.52 -12.78 -0.10 12.13 16 13 O -0.57 -16.03 16.50 5.18 0.09 -15.95 16 14 C 0.07 1.57 6.39 -82.30 -0.53 1.05 16 15 C -0.15 -2.96 10.55 -39.14 -0.41 -3.37 16 16 C -0.14 -2.49 6.14 -106.88 -0.66 -3.14 16 17 C 0.11 1.85 7.25 -83.96 -0.61 1.25 16 18 C -0.14 -1.77 10.06 -39.43 -0.40 -2.16 16 19 C -0.08 -0.94 10.01 -39.54 -0.40 -1.34 16 20 C -0.19 -2.40 10.00 -39.55 -0.40 -2.79 16 21 C 0.14 2.24 7.35 -38.98 -0.29 1.95 16 22 F -0.14 -2.25 17.28 2.25 0.04 -2.21 16 23 N -0.58 -10.38 4.18 -7.36 -0.03 -10.41 16 24 H 0.43 7.18 3.36 -40.82 -0.14 7.04 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.61 6.32 -51.93 -0.33 0.28 16 27 H 0.11 2.36 6.27 -51.93 -0.33 2.03 16 28 H 0.12 2.64 5.87 -51.93 -0.30 2.34 16 29 H 0.04 0.68 5.18 -51.93 -0.27 0.42 16 30 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 31 H 0.15 2.98 8.06 -52.49 -0.42 2.56 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -28.29 285.57 -7.20 -35.48 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -3.00 Total: 9.93 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -3.72 Total: -4.66 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.12 Total: -41.16 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.09 Total: -15.95 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.29 -7.20 -35.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.171 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds