Wall clock time and date at job start Mon Mar 30 2020 01:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46986 * 2 1 4 4 C 1.36818 * 119.99679 * 261.86275 * 3 2 1 5 5 H 1.08004 * 119.99472 * 196.34677 * 4 3 2 6 6 C 1.39044 * 120.00455 * 16.34169 * 4 3 2 7 7 N 1.31374 * 119.99927 * 12.66388 * 6 4 3 8 8 Si 1.86801 * 120.00481 * 192.65992 * 6 4 3 9 9 H 1.48500 * 109.47253 * 89.99997 * 8 6 4 10 10 H 1.48492 * 109.47567 * 210.00577 * 8 6 4 11 11 H 1.48508 * 109.47112 * 330.00512 * 8 6 4 12 12 C 1.34775 * 120.00211 * 81.86025 * 3 2 1 13 13 O 1.21706 * 120.00204 * 181.69562 * 12 3 2 14 14 C 1.46837 * 119.99687 * 1.69479 * 12 3 2 15 15 C 1.36032 * 125.44837 * 169.98288 * 14 12 3 16 16 C 1.41476 * 107.73407 * 179.97438 * 15 14 12 17 17 C 1.40884 * 107.01613 * 359.97438 * 16 15 14 18 18 C 1.39135 * 119.54055 * 179.97438 * 17 16 15 19 19 C 1.37741 * 120.01107 * 0.03084 * 18 17 16 20 20 C 1.38834 * 120.69186 * 359.94878 * 19 18 17 21 21 C 1.37727 * 120.44122 * 0.29931 * 20 19 18 22 22 F 1.35103 * 120.17471 * 179.69818 * 21 20 19 23 23 N 1.37564 * 107.38133 * 0.02562 * 17 16 15 24 24 H 0.97001 * 125.61473 * 179.97438 * 23 17 16 25 25 H 1.08993 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47143 * 300.00193 * 1 2 3 27 27 H 1.09001 * 109.47314 * 59.99839 * 1 2 3 28 28 H 1.09004 * 109.47336 * 240.00487 * 2 1 3 29 29 H 1.08994 * 109.47322 * 119.99476 * 2 1 3 30 30 H 0.97000 * 119.99552 * 179.97438 * 7 6 4 31 31 H 1.08001 * 126.13168 * 0.02562 * 15 14 12 32 32 H 1.08002 * 119.99455 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.65611 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.78592 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4045 1.9703 -1.1730 5 1 3.0018 2.8699 -1.1544 6 6 2.0280 1.4107 -2.3889 7 7 1.1071 0.4745 -2.4241 8 14 2.8316 1.9901 -3.9726 9 1 4.0348 1.1644 -4.2481 10 1 1.8693 1.8528 -5.0951 11 1 3.2299 3.4140 -3.8334 12 6 2.0872 2.0718 1.1554 13 8 2.4635 3.2291 1.1512 14 6 1.7080 1.4276 2.4193 15 6 1.9131 1.9443 3.6608 16 6 1.4058 1.0182 4.6023 17 6 0.8896 -0.0708 3.8725 18 6 0.3205 -1.1436 4.5514 19 6 0.2639 -1.1360 5.9277 20 6 0.7714 -0.0658 6.6519 21 6 1.3353 1.0107 6.0037 22 9 1.8220 2.0520 6.7136 23 7 1.0847 0.1996 2.5378 24 1 0.8274 -0.3768 1.8012 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 0.8443 0.0844 -3.2724 31 1 2.3790 2.8920 3.8871 32 1 -0.0771 -1.9823 3.9993 33 1 -0.1795 -1.9716 6.4489 34 1 0.7198 -0.0754 7.7306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:01 Heat of formation + Delta-G solvation = 1.955301 kcal Electronic energy + Delta-G solvation = -21177.182361 eV Core-core repulsion = 17798.074070 eV Total energy + Delta-G solvation = -3379.108291 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.81335 -42.74184 -40.29407 -37.60367 -37.37923 -34.13194 -32.93608 -31.69077 -30.47400 -29.68395 -27.31919 -24.83887 -24.03356 -23.27461 -22.20635 -21.07525 -19.38139 -18.94398 -18.54733 -17.14445 -16.80384 -16.70318 -16.51285 -16.38324 -16.06522 -15.89915 -15.20889 -14.94626 -14.89818 -14.12008 -14.01829 -13.88411 -13.69755 -13.33528 -12.97649 -12.84161 -12.49784 -12.42290 -12.38873 -12.29115 -12.12628 -11.88604 -11.05930 -10.80371 -10.76763 -9.88108 -9.34343 -8.69833 -8.41965 -6.03910 -0.29315 0.50976 1.03684 1.41885 1.43847 1.52578 1.95345 2.21694 2.35785 2.74429 2.80850 3.02528 3.30752 3.63992 3.80508 4.00988 4.02421 4.12084 4.33525 4.45687 4.51059 4.57019 4.76976 4.79269 4.89558 5.12992 5.22302 5.28474 5.32513 5.41891 5.52446 5.56057 5.74471 5.93959 6.05792 6.36260 6.43766 6.99430 7.22345 7.79522 8.52624 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.004885 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.715085 B = 5729.945497 C = 6427.988356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.431 5.431 4 C -0.344 4.344 5 H 0.077 0.923 6 C 0.006 3.994 7 N -0.868 5.868 8 Si 0.996 3.004 9 H -0.265 1.265 10 H -0.268 1.268 11 H -0.280 1.280 12 C 0.476 3.524 13 O -0.625 6.625 14 C 0.045 3.955 15 C -0.152 4.152 16 C -0.169 4.169 17 C 0.111 3.889 18 C -0.135 4.135 19 C -0.058 4.058 20 C -0.171 4.171 21 C 0.116 3.884 22 F -0.149 7.149 23 N -0.574 5.574 24 H 0.438 0.562 25 H 0.087 0.913 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.280 0.720 31 H 0.137 0.863 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 -10.939 10.988 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.146 5.146 4 C -0.472 4.472 5 H 0.095 0.905 6 C -0.197 4.197 7 N -0.506 5.506 8 Si 0.819 3.181 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.205 1.205 12 C 0.266 3.734 13 O -0.513 6.513 14 C -0.066 4.066 15 C -0.179 4.179 16 C -0.174 4.174 17 C 0.000 4.000 18 C -0.156 4.156 19 C -0.077 4.077 20 C -0.190 4.190 21 C 0.096 3.904 22 F -0.127 7.127 23 N -0.191 5.191 24 H 0.291 0.709 25 H 0.106 0.894 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.200 0.800 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.458 -10.575 10.581 15.610 hybrid contribution 0.569 0.943 -1.198 1.628 sum -3.889 -9.632 9.383 13.998 Atomic orbital electron populations 1.22293 0.94684 1.02816 1.01871 1.22046 0.95837 0.82539 1.01980 1.43920 1.53155 1.11934 1.05628 1.19765 1.32176 1.11756 0.83473 0.90506 1.26051 0.95532 0.96555 1.01580 1.70022 1.26179 1.26161 1.28244 0.84891 0.78320 0.78398 0.76479 1.19039 1.19274 1.20538 1.17450 0.86473 0.86093 0.83387 1.90615 1.55632 1.18423 1.86649 1.20206 1.03413 0.88152 0.94779 1.20694 1.06427 1.00809 0.90006 1.18281 1.08577 0.97768 0.92789 1.18677 1.01149 0.96837 0.83348 1.20565 1.03069 0.96892 0.95047 1.21152 0.96593 0.98078 0.91903 1.21221 1.02635 0.93045 1.02130 1.17532 0.99667 0.86565 0.86592 1.91434 1.86012 1.57194 1.78099 1.43822 1.50790 1.17202 1.07292 0.70901 0.89419 0.94900 0.90559 0.87492 0.92192 0.90953 0.84539 0.82313 0.80034 0.81892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.90 8.29 71.98 0.60 -5.31 16 2 C 0.10 4.12 4.80 86.38 0.41 4.54 16 3 N -0.43 -22.26 2.64 -639.90 -1.69 -23.95 16 4 C -0.34 -19.06 9.40 84.11 0.79 -18.27 16 5 H 0.08 4.62 7.32 -2.91 -0.02 4.60 16 6 C 0.01 0.31 5.11 84.95 0.43 0.75 16 7 N -0.87 -40.65 8.19 21.68 0.18 -40.48 16 8 Si 1.00 40.00 29.57 68.60 2.03 42.03 16 9 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 10 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 C 0.48 25.43 7.52 86.49 0.65 26.09 16 13 O -0.62 -38.27 16.50 -4.37 -0.07 -38.34 16 14 C 0.05 2.01 6.39 39.87 0.25 2.27 16 15 C -0.15 -6.45 10.55 22.55 0.24 -6.21 16 16 C -0.17 -5.97 6.14 -21.33 -0.13 -6.11 16 17 C 0.11 3.43 7.25 39.11 0.28 3.71 16 18 C -0.14 -2.83 10.06 22.37 0.23 -2.60 16 19 C -0.06 -0.95 10.01 22.29 0.22 -0.73 16 20 C -0.17 -3.52 10.00 22.29 0.22 -3.30 16 21 C 0.12 3.48 7.35 22.66 0.17 3.65 16 22 F -0.15 -4.74 17.28 44.97 0.78 -3.96 16 23 N -0.57 -20.24 4.18 -177.20 -0.74 -20.98 16 24 H 0.44 13.91 3.36 -92.71 -0.31 13.60 16 25 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.03 1.21 6.32 -2.39 -0.02 1.19 16 27 H 0.08 3.36 6.27 -2.39 -0.01 3.34 16 28 H 0.11 4.72 5.87 -2.39 -0.01 4.71 16 29 H 0.06 2.21 5.18 -2.39 -0.01 2.20 16 30 H 0.28 12.14 8.31 -92.71 -0.77 11.37 16 31 H 0.14 5.95 8.06 -2.91 -0.02 5.92 16 32 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -67.67 285.57 5.70 -61.97 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.85 Total: 25.24 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.37 Total: -1.52 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.25 Total: -85.41 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.07 Total: -38.34 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.78 Total: -3.96 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -67.67 5.70 -61.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.924 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds