Wall clock time and date at job start Mon Mar 30 2020 01:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47079 * 2 1 4 4 C 1.50704 * 109.46891 * 119.99235 * 2 1 3 5 5 O 1.21308 * 119.99173 * 120.00933 * 4 2 1 6 6 N 1.34769 * 120.00349 * 300.00370 * 4 2 1 7 7 C 1.40597 * 119.99949 * 180.02562 * 6 4 2 8 8 C 1.40648 * 126.08176 * 0.04729 * 7 6 4 9 9 N 1.30907 * 108.38298 * 179.70387 * 8 7 6 10 10 N 1.40067 * 108.41113 * 0.40226 * 9 8 7 11 11 C 1.37320 * 126.07294 * 179.85605 * 10 9 8 12 12 H 1.08002 * 120.00430 * 179.69232 * 11 10 9 13 13 C 1.38992 * 119.99664 * 359.41108 * 11 10 9 14 14 N 1.31294 * 120.00157 * 0.27652 * 13 11 10 15 15 Si 1.86803 * 119.99838 * 180.27798 * 13 11 10 16 16 H 1.48504 * 109.47034 * 59.99910 * 15 13 11 17 17 H 1.48498 * 109.47326 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46993 * 299.99983 * 15 13 11 19 19 C 1.35688 * 126.08014 * 179.97438 * 7 6 4 20 20 N 1.46491 * 109.47435 * 239.99748 * 2 1 3 21 21 C 1.34434 * 126.82252 * 324.70820 * 20 2 1 22 22 N 1.30830 * 108.07743 * 179.89378 * 21 20 2 23 23 C 1.33247 * 109.83016 * 0.38195 * 22 21 20 24 24 N 1.30716 * 108.94196 * 359.76109 * 23 22 21 25 25 H 1.08996 * 109.47076 * 60.00502 * 1 2 3 26 26 H 1.09005 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47289 * 300.00126 * 1 2 3 28 28 H 0.97002 * 120.00333 * 359.97438 * 6 4 2 29 29 H 1.07999 * 125.80726 * 359.95383 * 8 7 6 30 30 H 0.97005 * 119.99961 * 179.97438 * 14 13 11 31 31 H 1.07996 * 126.24199 * 0.07665 * 19 7 6 32 32 H 1.07994 * 125.95860 * 0.03669 * 21 20 2 33 33 H 1.07995 * 125.53069 * 179.79983 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7298 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1758 -0.9122 3.6026 8 6 2.9890 -2.0595 3.6228 9 7 3.2224 -2.3783 4.8708 10 7 2.5626 -1.4565 5.6936 11 6 2.5621 -1.4540 7.0668 12 1 2.0212 -0.6899 7.6053 13 6 3.2528 -2.4384 7.7638 14 7 3.9103 -3.3674 7.1092 15 14 3.2457 -2.4395 9.6318 16 1 1.8494 -2.5661 10.1214 17 1 4.0508 -3.5839 10.1292 18 1 3.8317 -1.1691 10.1298 19 6 1.9256 -0.5574 4.8882 20 7 2.0184 -0.6906 -1.1960 21 6 1.4589 -1.7553 -1.7966 22 7 2.1942 -2.0704 -2.8318 23 6 3.2315 -1.2387 -2.9194 24 7 3.1675 -0.3758 -1.9396 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.1493 0.5391 2.5436 29 1 3.3612 -2.5855 2.7560 30 1 4.3927 -4.0542 7.5957 31 1 1.3303 0.2826 5.2144 32 1 0.5582 -2.2607 -1.4810 33 1 4.0001 -1.2716 -3.6773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049993977.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:53 Heat of formation + Delta-G solvation = 150.025845 kcal Electronic energy + Delta-G solvation = -20483.776309 eV Core-core repulsion = 17163.301552 eV Total energy + Delta-G solvation = -3320.474758 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.09328 -40.07190 -38.82952 -35.02903 -34.41672 -33.23452 -31.34350 -30.41584 -30.03166 -27.80702 -25.55309 -24.70053 -22.44437 -21.85624 -21.04910 -20.22215 -19.50786 -17.75128 -17.46621 -16.74305 -15.62525 -15.50586 -15.23316 -15.04057 -14.70044 -14.24938 -14.07287 -13.68783 -13.32644 -13.01605 -12.81009 -12.68291 -12.43768 -11.73426 -11.64118 -11.51142 -11.28399 -11.03494 -10.60068 -10.30223 -10.14653 -10.00657 -9.72100 -9.24240 -9.18602 -8.87946 -8.13980 -6.81640 -6.61301 -4.29905 1.60844 2.14686 2.59057 2.96589 3.00802 3.01876 3.05755 3.40427 3.57812 3.80832 4.19519 4.31952 4.38221 4.49509 4.58601 4.78154 4.93727 4.96493 5.14779 5.15178 5.33166 5.59788 6.14797 6.20935 6.34103 6.45212 6.70833 6.79713 6.86535 6.98557 7.15370 7.78172 7.99795 8.09583 8.17457 8.48809 8.68824 9.30106 9.58983 10.34419 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.045636 B = 0.003568 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.403731 B = 7845.468709 C = 8223.527981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.128 0.872 4 C 0.485 3.515 5 O -0.518 6.518 6 N -0.614 5.614 7 C -0.065 4.065 8 C -0.030 4.030 9 N -0.260 5.260 10 N -0.140 5.140 11 C -0.324 4.324 12 H 0.117 0.883 13 C 0.047 3.953 14 N -0.768 5.768 15 Si 0.936 3.064 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.266 1.266 19 C -0.082 4.082 20 N -0.358 5.358 21 C 0.270 3.730 22 N -0.549 5.549 23 C 0.196 3.804 24 N -0.314 5.314 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.398 0.602 29 H 0.174 0.826 30 H 0.276 0.724 31 H 0.147 0.853 32 H 0.214 0.786 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 8.029 -10.677 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.146 0.854 4 C 0.267 3.733 5 O -0.393 6.393 6 N -0.257 5.257 7 C -0.170 4.170 8 C -0.206 4.206 9 N -0.091 5.091 10 N 0.093 4.907 11 C -0.456 4.456 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.394 5.394 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.191 1.191 19 C -0.233 4.233 20 N -0.148 5.148 21 C -0.027 4.027 22 N -0.276 5.276 23 C -0.107 4.107 24 N -0.141 5.141 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.231 0.769 29 H 0.191 0.809 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.230 0.770 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.638 6.626 -9.981 13.696 hybrid contribution -0.827 1.003 0.551 1.412 sum -7.465 7.629 -9.430 14.243 Atomic orbital electron populations 1.22186 0.90347 1.04647 1.04772 1.21171 0.96086 0.97876 0.81411 0.85411 1.20261 0.82849 0.86088 0.84057 1.90684 1.37163 1.25869 1.85619 1.42349 1.50188 1.29496 1.03639 1.17224 1.13424 1.02004 0.84389 1.24082 1.02503 0.97537 0.96430 1.78285 1.19066 1.13261 0.98516 1.44566 1.26398 1.14596 1.05122 1.19855 1.34307 1.14692 0.76790 0.86554 1.25657 0.95151 0.94864 1.01431 1.70205 1.22506 1.10102 1.36629 0.85881 0.79099 0.78709 0.80392 1.19111 1.20084 1.19117 1.21240 1.11005 1.01895 0.89194 1.50014 1.18904 1.24322 1.21531 1.25861 0.99232 0.87816 0.89749 1.70549 1.07366 1.28694 1.21027 1.25944 0.97255 0.90326 0.97150 1.78032 1.02584 1.25532 1.07920 0.90231 0.90578 0.88892 0.76867 0.80938 0.91301 0.83587 0.76954 0.76802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 8.75 37.16 0.33 -0.77 16 2 C 0.14 1.58 3.77 -69.08 -0.26 1.32 16 3 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.48 7.84 7.19 -10.99 -0.08 7.76 16 5 O -0.52 -11.03 13.57 5.53 0.08 -10.95 16 6 N -0.61 -9.83 5.36 -10.00 -0.05 -9.88 16 7 C -0.06 -1.43 6.90 -83.84 -0.58 -2.01 16 8 C -0.03 -0.78 10.85 -17.04 -0.18 -0.97 16 9 N -0.26 -7.51 10.40 30.80 0.32 -7.19 16 10 N -0.14 -3.76 3.74 -11.41 -0.04 -3.80 16 11 C -0.32 -8.41 10.25 -14.81 -0.15 -8.56 16 12 H 0.12 2.66 7.83 -52.49 -0.41 2.25 16 13 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 14 N -0.77 -21.29 11.81 55.50 0.66 -20.64 16 15 Si 0.94 18.58 29.55 -169.99 -5.02 13.56 16 16 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 17 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 19 C -0.08 -1.86 11.49 -16.39 -0.19 -2.04 16 20 N -0.36 -4.83 3.04 -57.25 -0.17 -5.00 16 21 C 0.27 3.44 11.76 -90.65 -1.07 2.37 16 22 N -0.55 -7.81 11.19 -15.83 -0.18 -7.99 16 23 C 0.20 2.64 13.03 -91.81 -1.20 1.44 16 24 N -0.31 -4.74 12.70 29.29 0.37 -4.37 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.52 7.23 -51.93 -0.38 0.15 16 27 H 0.09 0.47 7.56 -51.93 -0.39 0.07 16 28 H 0.40 4.49 8.24 -40.82 -0.34 4.15 16 29 H 0.17 4.55 5.92 -52.49 -0.31 4.24 16 30 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.15 2.68 8.06 -52.49 -0.42 2.26 16 32 H 0.21 1.90 7.33 -52.49 -0.38 1.51 16 33 H 0.22 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -36.85 296.99 -6.09 -42.93 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.04 Total: 9.21 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.48 Total: -0.37 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.90 Total: -58.86 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.85 -6.09 -42.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993977.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.958 kcal (2) G-P(sol) polarization free energy of solvation -36.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds