Wall clock time and date at job start Mon Mar 30 2020 01:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47079 * 2 1 4 4 C 1.50704 * 109.46891 * 119.99235 * 2 1 3 5 5 O 1.21308 * 119.99173 * 120.00933 * 4 2 1 6 6 N 1.34769 * 120.00349 * 300.00370 * 4 2 1 7 7 C 1.40597 * 119.99949 * 180.02562 * 6 4 2 8 8 C 1.40648 * 126.08176 * 0.04729 * 7 6 4 9 9 N 1.30907 * 108.38298 * 179.70387 * 8 7 6 10 10 N 1.40067 * 108.41113 * 0.40226 * 9 8 7 11 11 C 1.37320 * 126.07294 * 179.85605 * 10 9 8 12 12 H 1.08002 * 120.00430 * 179.69232 * 11 10 9 13 13 C 1.38992 * 119.99664 * 359.41108 * 11 10 9 14 14 N 1.31294 * 120.00157 * 0.27652 * 13 11 10 15 15 Si 1.86803 * 119.99838 * 180.27798 * 13 11 10 16 16 H 1.48504 * 109.47034 * 59.99910 * 15 13 11 17 17 H 1.48498 * 109.47326 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46993 * 299.99983 * 15 13 11 19 19 C 1.35688 * 126.08014 * 179.97438 * 7 6 4 20 20 N 1.46491 * 109.47435 * 239.99748 * 2 1 3 21 21 C 1.34434 * 126.82252 * 324.70820 * 20 2 1 22 22 N 1.30830 * 108.07743 * 179.89378 * 21 20 2 23 23 C 1.33247 * 109.83016 * 0.38195 * 22 21 20 24 24 N 1.30716 * 108.94196 * 359.76109 * 23 22 21 25 25 H 1.08996 * 109.47076 * 60.00502 * 1 2 3 26 26 H 1.09005 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47289 * 300.00126 * 1 2 3 28 28 H 0.97002 * 120.00333 * 359.97438 * 6 4 2 29 29 H 1.07999 * 125.80726 * 359.95383 * 8 7 6 30 30 H 0.97005 * 119.99961 * 179.97438 * 14 13 11 31 31 H 1.07996 * 126.24199 * 0.07665 * 19 7 6 32 32 H 1.07994 * 125.95860 * 0.03669 * 21 20 2 33 33 H 1.07995 * 125.53069 * 179.79983 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7298 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1758 -0.9122 3.6026 8 6 2.9890 -2.0595 3.6228 9 7 3.2224 -2.3783 4.8708 10 7 2.5626 -1.4565 5.6936 11 6 2.5621 -1.4540 7.0668 12 1 2.0212 -0.6899 7.6053 13 6 3.2528 -2.4384 7.7638 14 7 3.9103 -3.3674 7.1092 15 14 3.2457 -2.4395 9.6318 16 1 1.8494 -2.5661 10.1214 17 1 4.0508 -3.5839 10.1292 18 1 3.8317 -1.1691 10.1298 19 6 1.9256 -0.5574 4.8882 20 7 2.0184 -0.6906 -1.1960 21 6 1.4589 -1.7553 -1.7966 22 7 2.1942 -2.0704 -2.8318 23 6 3.2315 -1.2387 -2.9194 24 7 3.1675 -0.3758 -1.9396 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.1493 0.5391 2.5436 29 1 3.3612 -2.5855 2.7560 30 1 4.3927 -4.0542 7.5957 31 1 1.3303 0.2826 5.2144 32 1 0.5582 -2.2607 -1.4810 33 1 4.0001 -1.2716 -3.6773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049993977.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:53 Heat of formation + Delta-G solvation = 124.001845 kcal Electronic energy + Delta-G solvation = -20484.904795 eV Core-core repulsion = 17163.301552 eV Total energy + Delta-G solvation = -3321.603243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.09793 -41.75223 -40.38424 -36.08634 -35.99951 -34.98006 -32.38476 -32.24958 -31.10939 -29.47309 -27.00835 -25.99022 -23.67597 -22.90357 -22.78499 -21.57967 -21.14867 -19.39789 -18.71925 -17.87520 -17.42538 -16.86495 -16.53141 -16.26083 -15.93348 -15.61213 -15.32190 -15.05571 -14.88918 -14.78315 -13.72874 -13.50318 -13.35898 -13.34145 -13.21791 -12.88430 -12.86703 -12.46930 -12.14834 -11.89285 -11.33356 -11.05109 -11.03029 -10.83759 -10.76961 -10.44206 -10.12866 -8.57487 -8.47944 -6.26356 0.58730 1.15204 1.23198 1.40044 1.45425 1.56396 1.83413 1.99488 2.06106 2.26536 2.45840 2.85891 3.08486 3.43496 3.47360 3.67121 3.81001 3.98497 4.29414 4.42229 4.56239 4.64903 4.71734 4.98381 5.02338 5.09234 5.25686 5.28382 5.38744 5.47984 5.81680 5.94254 6.27603 6.63644 6.71796 7.09168 7.27399 7.45085 7.65786 8.51086 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.045636 B = 0.003568 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.403731 B = 7845.468709 C = 8223.527981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.152 3.848 3 H 0.151 0.849 4 C 0.485 3.515 5 O -0.572 6.572 6 N -0.601 5.601 7 C -0.046 4.046 8 C -0.060 4.060 9 N -0.313 5.313 10 N -0.167 5.167 11 C -0.355 4.355 12 H 0.144 0.856 13 C -0.007 4.007 14 N -0.826 5.826 15 Si 1.019 2.981 16 H -0.251 1.251 17 H -0.280 1.280 18 H -0.253 1.253 19 C -0.074 4.074 20 N -0.366 5.366 21 C 0.269 3.731 22 N -0.574 5.574 23 C 0.193 3.807 24 N -0.350 5.350 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.425 0.575 29 H 0.159 0.841 30 H 0.276 0.724 31 H 0.194 0.806 32 H 0.245 0.755 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 10.387 -10.417 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.168 0.832 4 C 0.270 3.730 5 O -0.451 6.451 6 N -0.247 5.247 7 C -0.152 4.152 8 C -0.235 4.235 9 N -0.145 5.145 10 N 0.064 4.936 11 C -0.486 4.486 12 H 0.162 0.838 13 C -0.218 4.218 14 N -0.454 5.454 15 Si 0.838 3.162 16 H -0.175 1.175 17 H -0.206 1.206 18 H -0.177 1.177 19 C -0.225 4.225 20 N -0.156 5.156 21 C -0.027 4.027 22 N -0.302 5.302 23 C -0.110 4.110 24 N -0.176 5.176 25 H 0.121 0.879 26 H 0.094 0.906 27 H 0.136 0.864 28 H 0.264 0.736 29 H 0.176 0.824 30 H 0.085 0.915 31 H 0.211 0.789 32 H 0.261 0.739 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.981 9.054 -9.749 16.053 hybrid contribution -0.149 0.318 0.288 0.455 sum -9.131 9.372 -9.461 16.147 Atomic orbital electron populations 1.22293 0.86383 1.05495 1.07169 1.21392 0.98770 0.97430 0.77894 0.83178 1.21297 0.81196 0.85218 0.85267 1.90677 1.39369 1.28490 1.86540 1.42233 1.50378 1.30027 1.02033 1.17270 1.11177 1.00394 0.86376 1.24067 1.04361 0.99579 0.95499 1.78176 1.21054 1.15467 0.99849 1.44853 1.27547 1.15417 1.05778 1.20627 1.35121 1.15852 0.76979 0.83844 1.26896 0.93990 0.93869 1.07074 1.70401 1.24484 1.11530 1.38997 0.84651 0.79651 0.78832 0.73069 1.17524 1.20552 1.17704 1.22051 1.09774 1.01848 0.88791 1.50201 1.18629 1.24845 1.21923 1.26538 0.99736 0.87333 0.89094 1.70567 1.08094 1.29391 1.22158 1.26582 0.97538 0.89559 0.97281 1.77957 1.03884 1.26887 1.08919 0.87910 0.90552 0.86381 0.73639 0.82389 0.91458 0.78911 0.73869 0.74070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.75 71.98 0.63 -0.82 16 2 C 0.15 2.96 3.77 44.25 0.17 3.12 16 3 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.48 14.97 7.19 87.66 0.63 15.60 16 5 O -0.57 -24.68 13.57 -3.12 -0.04 -24.72 16 6 N -0.60 -17.81 5.36 -303.92 -1.63 -19.44 16 7 C -0.05 -1.99 6.90 37.73 0.26 -1.73 16 8 C -0.06 -3.23 10.85 85.42 0.93 -2.31 16 9 N -0.31 -18.83 10.40 -56.47 -0.59 -19.41 16 10 N -0.17 -9.06 3.74 -190.01 -0.71 -9.77 16 11 C -0.35 -18.36 10.25 84.01 0.86 -17.49 16 12 H 0.14 6.31 7.83 -2.91 -0.02 6.29 16 13 C -0.01 -0.34 5.50 84.95 0.47 0.12 16 14 N -0.83 -47.69 11.81 21.66 0.26 -47.43 16 15 Si 1.02 37.93 29.55 68.60 2.03 39.96 16 16 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 17 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 18 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 19 C -0.07 -3.23 11.49 83.38 0.96 -2.27 16 20 N -0.37 -9.27 3.04 -335.03 -1.02 -10.29 16 21 C 0.27 6.43 11.76 180.36 2.12 8.55 16 22 N -0.57 -15.80 11.19 -204.00 -2.28 -18.09 16 23 C 0.19 5.05 13.03 180.76 2.36 7.41 16 24 N -0.35 -10.26 12.70 -61.24 -0.78 -11.03 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.08 0.76 7.23 -2.38 -0.02 0.74 16 27 H 0.12 0.55 7.56 -2.39 -0.02 0.53 16 28 H 0.43 7.84 8.24 -92.71 -0.76 7.07 16 29 H 0.16 8.87 5.92 -2.91 -0.02 8.85 16 30 H 0.28 14.72 8.31 -92.70 -0.77 13.95 16 31 H 0.19 6.30 8.06 -2.91 -0.02 6.27 16 32 H 0.25 3.79 7.33 -2.91 -0.02 3.77 16 33 H 0.24 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -86.20 296.99 5.02 -81.18 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.40 Total: 28.87 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 9.38 Total: 10.19 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -6.75 Total: -135.47 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.04 Total: -24.72 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -86.20 5.02 -81.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993977.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.179 kcal (2) G-P(sol) polarization free energy of solvation -86.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds