Wall clock time and date at job start Mon Mar 30 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21303 * 120.00012 * 240.00289 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.40597 * 119.99665 * 179.72549 * 6 4 2 8 8 C 1.40645 * 126.08535 * 0.30091 * 7 6 4 9 9 N 1.30904 * 108.39186 * 179.97438 * 8 7 6 10 10 N 1.40072 * 108.40435 * 0.02562 * 9 8 7 11 11 C 1.37323 * 126.06487 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99779 * 179.97438 * 11 10 9 13 13 C 1.38983 * 120.00483 * 359.97067 * 11 10 9 14 14 N 1.31297 * 119.99742 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47563 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47219 * 120.00312 * 15 13 11 18 18 H 1.48499 * 109.47356 * 240.00022 * 15 13 11 19 19 C 1.35680 * 126.07949 * 179.97438 * 7 6 4 20 20 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 21 21 C 1.34422 * 126.81859 * 35.00206 * 20 2 1 22 22 N 1.30835 * 108.07638 * 179.97438 * 21 20 2 23 23 C 1.33245 * 109.82629 * 0.02562 * 22 21 20 24 24 N 1.30714 * 108.94711 * 359.74755 * 23 22 21 25 25 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 26 26 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 29 29 H 1.08003 * 125.80372 * 359.93542 * 8 7 6 30 30 H 0.96996 * 119.99734 * 180.02562 * 14 13 11 31 31 H 1.07994 * 126.24842 * 0.03782 * 19 7 6 32 32 H 1.08000 * 125.96838 * 359.93075 * 21 20 2 33 33 H 1.08004 * 125.52639 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6967 -1.1190 6 7 1.7067 -0.2501 -2.4545 7 6 2.1802 -0.9095 -3.6024 8 6 2.9924 -2.0576 -3.6225 9 7 3.2253 -2.3770 -4.8704 10 7 2.5742 -1.4490 -5.6933 11 6 2.5779 -1.4439 -7.0665 12 1 2.0394 -0.6782 -7.6051 13 6 3.2746 -2.4240 -7.7633 14 7 3.9289 -3.3552 -7.1086 15 14 3.2801 -2.4165 -9.6312 16 1 2.4740 -1.2708 -10.1241 17 1 4.6757 -2.2865 -10.1217 18 1 2.6954 -3.6860 -10.1331 19 6 1.9298 -0.5551 -4.8879 20 7 2.0183 -0.6905 1.1963 21 6 1.4558 -1.7517 1.8000 22 7 2.1938 -2.0698 2.8324 23 6 3.2309 -1.2379 2.9201 24 7 3.1699 -0.3784 1.9372 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.1493 0.5388 -2.5436 29 1 3.3617 -2.5855 -2.7557 30 1 4.4155 -4.0390 -7.5949 31 1 1.3323 0.2832 -5.2144 32 1 0.5520 -2.2537 1.4877 33 1 3.9995 -1.2708 3.6782 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049993978.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:55 Heat of formation + Delta-G solvation = 149.958331 kcal Electronic energy + Delta-G solvation = -20483.497322 eV Core-core repulsion = 17163.019637 eV Total energy + Delta-G solvation = -3320.477685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09448 -40.07339 -38.83086 -35.03064 -34.41786 -33.23578 -31.34437 -30.41638 -30.03243 -27.80893 -25.55586 -24.70344 -22.44520 -21.85489 -21.05028 -20.22392 -19.50835 -17.75338 -17.46750 -16.74675 -15.62953 -15.51130 -15.23251 -15.04364 -14.69747 -14.25060 -14.06431 -13.68391 -13.32829 -13.02497 -12.81096 -12.68424 -12.43800 -11.74401 -11.64344 -11.51303 -11.31852 -11.01055 -10.54994 -10.31278 -10.15032 -10.00307 -9.72289 -9.25558 -9.18700 -8.88162 -8.14055 -6.81738 -6.61731 -4.30044 1.60877 2.14460 2.58791 2.94880 3.01044 3.01943 3.07764 3.40211 3.57801 3.80325 4.19468 4.31788 4.38030 4.49416 4.58566 4.78027 4.93648 4.96314 5.14700 5.15036 5.33022 5.59660 6.14701 6.20841 6.34037 6.45174 6.70759 6.79651 6.86889 6.98456 7.15271 7.78414 7.99708 8.09535 8.17360 8.48707 8.68737 9.30097 9.58869 10.34170 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.045637 B = 0.003568 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.387730 B = 7846.019773 C = 8224.644958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.128 0.872 4 C 0.485 3.515 5 O -0.518 6.518 6 N -0.614 5.614 7 C -0.065 4.065 8 C -0.030 4.030 9 N -0.260 5.260 10 N -0.140 5.140 11 C -0.323 4.323 12 H 0.118 0.882 13 C 0.046 3.954 14 N -0.768 5.768 15 Si 0.936 3.064 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.082 4.082 20 N -0.358 5.358 21 C 0.270 3.730 22 N -0.549 5.549 23 C 0.196 3.804 24 N -0.314 5.314 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.398 0.602 29 H 0.174 0.826 30 H 0.275 0.725 31 H 0.147 0.853 32 H 0.214 0.786 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 8.064 10.708 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.146 0.854 4 C 0.268 3.732 5 O -0.393 6.393 6 N -0.257 5.257 7 C -0.170 4.170 8 C -0.206 4.206 9 N -0.091 5.091 10 N 0.092 4.908 11 C -0.456 4.456 12 H 0.135 0.865 13 C -0.172 4.172 14 N -0.394 5.394 15 Si 0.759 3.241 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.233 4.233 20 N -0.148 5.148 21 C -0.027 4.027 22 N -0.276 5.276 23 C -0.107 4.107 24 N -0.141 5.141 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.231 0.769 29 H 0.191 0.809 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.230 0.770 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.686 6.662 10.005 13.754 hybrid contribution -0.810 0.997 -0.544 1.395 sum -7.496 7.660 9.461 14.296 Atomic orbital electron populations 1.22184 0.90340 1.04649 1.04779 1.21174 0.96091 0.97868 0.81411 0.85415 1.20260 0.82835 0.86094 0.84054 1.90683 1.37167 1.25852 1.85615 1.42353 1.50089 1.29607 1.03639 1.17222 1.13242 1.02164 0.84394 1.24081 1.02570 0.97468 0.96434 1.78286 1.19492 1.12814 0.98515 1.44586 1.26447 1.14577 1.05149 1.19946 1.34098 1.14750 0.76760 0.86467 1.25662 0.95159 0.94881 1.01449 1.70225 1.22599 1.10178 1.36429 0.85747 0.78801 0.79039 0.80464 1.18654 1.19869 1.19859 1.21240 1.10697 1.02165 0.89194 1.50016 1.18651 1.24564 1.21535 1.25861 0.99223 0.87802 0.89798 1.70551 1.07358 1.28537 1.21184 1.25946 0.97291 0.90350 0.97104 1.78034 1.02525 1.25626 1.07867 0.88882 0.90574 0.90232 0.76866 0.80941 0.91413 0.83585 0.76952 0.76801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.75 37.16 0.33 -0.77 16 2 C 0.14 1.58 3.77 -69.08 -0.26 1.32 16 3 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.48 7.84 7.19 -10.99 -0.08 7.76 16 5 O -0.52 -11.03 13.57 5.54 0.08 -10.95 16 6 N -0.61 -9.82 5.36 -10.00 -0.05 -9.88 16 7 C -0.06 -1.43 6.90 -83.84 -0.58 -2.01 16 8 C -0.03 -0.78 10.85 -17.04 -0.18 -0.97 16 9 N -0.26 -7.50 10.40 30.80 0.32 -7.18 16 10 N -0.14 -3.77 3.74 -11.41 -0.04 -3.82 16 11 C -0.32 -8.38 10.25 -14.82 -0.15 -8.54 16 12 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 13 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 14 N -0.77 -21.29 11.81 55.49 0.66 -20.64 16 15 Si 0.94 18.60 29.55 -169.99 -5.02 13.58 16 16 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 18 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 19 C -0.08 -1.85 11.49 -16.39 -0.19 -2.03 16 20 N -0.36 -4.83 3.04 -57.24 -0.17 -5.00 16 21 C 0.27 3.43 11.77 -90.66 -1.07 2.36 16 22 N -0.55 -7.80 11.19 -15.83 -0.18 -7.98 16 23 C 0.20 2.64 13.03 -91.81 -1.20 1.44 16 24 N -0.31 -4.74 12.70 29.29 0.37 -4.37 16 25 H 0.09 0.46 7.56 -51.93 -0.39 0.07 16 26 H 0.08 0.52 7.22 -51.93 -0.37 0.15 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.40 4.49 8.24 -40.82 -0.34 4.15 16 29 H 0.17 4.55 5.92 -52.48 -0.31 4.24 16 30 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.15 2.68 8.06 -52.49 -0.42 2.26 16 32 H 0.21 1.89 7.32 -52.49 -0.38 1.51 16 33 H 0.22 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -36.90 296.98 -6.09 -42.99 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.04 Total: 9.13 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -3.48 Total: -0.35 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.90 Total: -58.86 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -36.90 -6.09 -42.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993978.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.944 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds