Wall clock time and date at job start Mon Mar 30 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21303 * 120.00012 * 240.00289 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.40597 * 119.99665 * 179.72549 * 6 4 2 8 8 C 1.40645 * 126.08535 * 0.30091 * 7 6 4 9 9 N 1.30904 * 108.39186 * 179.97438 * 8 7 6 10 10 N 1.40072 * 108.40435 * 0.02562 * 9 8 7 11 11 C 1.37323 * 126.06487 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99779 * 179.97438 * 11 10 9 13 13 C 1.38983 * 120.00483 * 359.97067 * 11 10 9 14 14 N 1.31297 * 119.99742 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47563 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47219 * 120.00312 * 15 13 11 18 18 H 1.48499 * 109.47356 * 240.00022 * 15 13 11 19 19 C 1.35680 * 126.07949 * 179.97438 * 7 6 4 20 20 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 21 21 C 1.34422 * 126.81859 * 35.00206 * 20 2 1 22 22 N 1.30835 * 108.07638 * 179.97438 * 21 20 2 23 23 C 1.33245 * 109.82629 * 0.02562 * 22 21 20 24 24 N 1.30714 * 108.94711 * 359.74755 * 23 22 21 25 25 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 26 26 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 29 29 H 1.08003 * 125.80372 * 359.93542 * 8 7 6 30 30 H 0.96996 * 119.99734 * 180.02562 * 14 13 11 31 31 H 1.07994 * 126.24842 * 0.03782 * 19 7 6 32 32 H 1.08000 * 125.96838 * 359.93075 * 21 20 2 33 33 H 1.08004 * 125.52639 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6967 -1.1190 6 7 1.7067 -0.2501 -2.4545 7 6 2.1802 -0.9095 -3.6024 8 6 2.9924 -2.0576 -3.6225 9 7 3.2253 -2.3770 -4.8704 10 7 2.5742 -1.4490 -5.6933 11 6 2.5779 -1.4439 -7.0665 12 1 2.0394 -0.6782 -7.6051 13 6 3.2746 -2.4240 -7.7633 14 7 3.9289 -3.3552 -7.1086 15 14 3.2801 -2.4165 -9.6312 16 1 2.4740 -1.2708 -10.1241 17 1 4.6757 -2.2865 -10.1217 18 1 2.6954 -3.6860 -10.1331 19 6 1.9298 -0.5551 -4.8879 20 7 2.0183 -0.6905 1.1963 21 6 1.4558 -1.7517 1.8000 22 7 2.1938 -2.0698 2.8324 23 6 3.2309 -1.2379 2.9201 24 7 3.1699 -0.3784 1.9372 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.1493 0.5388 -2.5436 29 1 3.3617 -2.5855 -2.7557 30 1 4.4155 -4.0390 -7.5949 31 1 1.3323 0.2832 -5.2144 32 1 0.5520 -2.2537 1.4877 33 1 3.9995 -1.2708 3.6782 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049993978.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:55 Heat of formation + Delta-G solvation = 123.877639 kcal Electronic energy + Delta-G solvation = -20484.628266 eV Core-core repulsion = 17163.019637 eV Total energy + Delta-G solvation = -3321.608629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.09813 -41.75341 -40.38500 -36.08659 -36.00071 -34.98082 -32.38473 -32.25013 -31.10939 -29.47422 -27.01168 -25.99187 -23.67572 -22.90386 -22.78427 -21.58011 -21.14885 -19.40016 -18.71891 -17.87799 -17.43601 -16.86429 -16.53154 -16.25894 -15.93128 -15.60206 -15.31936 -15.05679 -14.89150 -14.79245 -13.72883 -13.51505 -13.36162 -13.33906 -13.21439 -12.94774 -12.85092 -12.47099 -12.02930 -11.92173 -11.33567 -11.06677 -11.04297 -10.83953 -10.77092 -10.44207 -10.13137 -8.57517 -8.48352 -6.26454 0.58889 1.14336 1.23008 1.40301 1.43612 1.59162 1.82964 1.99489 2.05548 2.26357 2.45796 2.85910 3.08328 3.43583 3.47376 3.67082 3.81052 3.98477 4.29481 4.42190 4.56189 4.65039 4.71737 4.98762 5.02269 5.09297 5.25729 5.28455 5.38727 5.48023 5.81750 5.94619 6.27507 6.63622 6.71721 7.09224 7.27413 7.45153 7.65692 8.51164 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.045637 B = 0.003568 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.387730 B = 7846.019773 C = 8224.644958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.152 3.848 3 H 0.151 0.849 4 C 0.485 3.515 5 O -0.572 6.572 6 N -0.601 5.601 7 C -0.046 4.046 8 C -0.060 4.060 9 N -0.313 5.313 10 N -0.168 5.168 11 C -0.353 4.353 12 H 0.144 0.856 13 C -0.008 4.008 14 N -0.826 5.826 15 Si 1.019 2.981 16 H -0.238 1.238 17 H -0.275 1.275 18 H -0.273 1.273 19 C -0.074 4.074 20 N -0.366 5.366 21 C 0.269 3.731 22 N -0.574 5.574 23 C 0.193 3.807 24 N -0.350 5.350 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.425 0.575 29 H 0.159 0.841 30 H 0.275 0.725 31 H 0.194 0.806 32 H 0.246 0.754 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 10.465 10.459 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.045 3.955 3 H 0.168 0.832 4 C 0.270 3.730 5 O -0.451 6.451 6 N -0.247 5.247 7 C -0.152 4.152 8 C -0.235 4.235 9 N -0.145 5.145 10 N 0.063 4.937 11 C -0.484 4.484 12 H 0.162 0.838 13 C -0.219 4.219 14 N -0.455 5.455 15 Si 0.838 3.162 16 H -0.160 1.160 17 H -0.200 1.200 18 H -0.199 1.199 19 C -0.224 4.224 20 N -0.156 5.156 21 C -0.027 4.027 22 N -0.302 5.302 23 C -0.110 4.110 24 N -0.177 5.177 25 H 0.136 0.864 26 H 0.095 0.905 27 H 0.121 0.879 28 H 0.264 0.736 29 H 0.176 0.824 30 H 0.085 0.915 31 H 0.211 0.789 32 H 0.262 0.738 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.057 9.133 9.783 16.160 hybrid contribution -0.122 0.294 -0.284 0.426 sum -9.179 9.427 9.500 16.229 Atomic orbital electron populations 1.22293 0.86366 1.05501 1.07183 1.21396 0.98783 0.97419 0.77888 0.83180 1.21298 0.81184 0.85223 0.85268 1.90676 1.39381 1.28478 1.86538 1.42236 1.50269 1.30145 1.02031 1.17269 1.11004 1.00542 0.86385 1.24066 1.04428 0.99512 0.95501 1.78177 1.21487 1.15018 0.99850 1.44872 1.27628 1.15375 1.05802 1.20697 1.34877 1.15866 0.76937 0.83822 1.26897 0.94026 0.93908 1.07066 1.70412 1.24559 1.11636 1.38849 0.84529 0.78817 0.79644 0.73175 1.16047 1.20022 1.19860 1.22051 1.09468 1.02102 0.88786 1.50203 1.18373 1.25090 1.21931 1.26542 0.99739 0.87302 0.89130 1.70568 1.08089 1.29239 1.22324 1.26582 0.97572 0.89580 0.97232 1.77958 1.03836 1.26989 1.08870 0.86368 0.90546 0.87899 0.73634 0.82400 0.91481 0.78900 0.73845 0.74075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.75 71.98 0.63 -0.81 16 2 C 0.15 2.95 3.77 44.24 0.17 3.12 16 3 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.48 14.96 7.19 87.66 0.63 15.60 16 5 O -0.57 -24.69 13.57 -3.10 -0.04 -24.73 16 6 N -0.60 -17.79 5.36 -303.93 -1.63 -19.42 16 7 C -0.05 -1.98 6.90 37.73 0.26 -1.72 16 8 C -0.06 -3.23 10.85 85.42 0.93 -2.31 16 9 N -0.31 -18.82 10.40 -56.47 -0.59 -19.40 16 10 N -0.17 -9.10 3.74 -190.02 -0.71 -9.81 16 11 C -0.35 -18.23 10.25 84.01 0.86 -17.37 16 12 H 0.14 6.34 7.83 -2.91 -0.02 6.32 16 13 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 14 N -0.83 -47.72 11.81 21.66 0.26 -47.46 16 15 Si 1.02 38.00 29.55 68.60 2.03 40.02 16 16 H -0.24 -7.81 7.11 99.48 0.71 -7.10 16 17 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 19 C -0.07 -3.20 11.49 83.37 0.96 -2.24 16 20 N -0.37 -9.27 3.04 -335.01 -1.02 -10.28 16 21 C 0.27 6.42 11.77 180.36 2.12 8.54 16 22 N -0.57 -15.80 11.19 -204.00 -2.28 -18.08 16 23 C 0.19 5.05 13.03 180.76 2.36 7.40 16 24 N -0.35 -10.26 12.70 -61.24 -0.78 -11.04 16 25 H 0.12 0.54 7.56 -2.39 -0.02 0.53 16 26 H 0.08 0.75 7.22 -2.39 -0.02 0.74 16 27 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.43 7.82 8.24 -92.71 -0.76 7.05 16 29 H 0.16 8.87 5.92 -2.91 -0.02 8.85 16 30 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.19 6.29 8.06 -2.91 -0.02 6.27 16 32 H 0.25 3.77 7.32 -2.91 -0.02 3.75 16 33 H 0.24 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -86.35 296.98 5.02 -81.33 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.40 Total: 28.59 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 9.38 Total: 10.29 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -6.75 Total: -135.50 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.02 kcal Total: -86.35 5.02 -81.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993978.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.210 kcal (2) G-P(sol) polarization free energy of solvation -86.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds