Wall clock time and date at job start Mon Mar 30 2020 01:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00411 * 2 1 4 4 C 1.53003 * 109.47008 * 293.95474 * 3 2 1 5 5 C 1.50701 * 109.47142 * 179.97438 * 4 3 2 6 6 H 1.07992 * 119.99881 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99731 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00277 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47194 * 90.00173 * 9 7 5 11 11 H 1.48497 * 109.47282 * 210.00267 * 9 7 5 12 12 H 1.48501 * 109.46969 * 330.00084 * 9 7 5 13 13 C 1.46906 * 110.99821 * 123.95385 * 2 1 3 14 14 C 1.50691 * 109.47209 * 66.04306 * 13 2 1 15 15 N 1.27933 * 124.23828 * 89.97402 * 14 13 2 16 16 C 1.34668 * 117.85007 * 180.02562 * 15 14 13 17 17 C 1.40959 * 129.69357 * 179.97438 * 16 15 14 18 18 C 1.36185 * 120.42591 * 180.02562 * 17 16 15 19 19 C 1.38790 * 120.77857 * 0.02562 * 18 17 16 20 20 C 1.37658 * 120.06491 * 359.97438 * 19 18 17 21 21 C 1.39335 * 119.95334 * 0.02562 * 20 19 18 22 22 S 1.70649 * 124.24005 * 270.00396 * 14 13 2 23 23 H 1.09005 * 109.46909 * 296.05140 * 1 2 3 24 24 H 1.09007 * 109.46752 * 56.04335 * 1 2 3 25 25 H 1.08990 * 109.47613 * 176.04580 * 1 2 3 26 26 H 1.08996 * 109.47364 * 53.95142 * 3 2 1 27 27 H 1.09002 * 109.47461 * 173.95183 * 3 2 1 28 28 H 1.09005 * 109.46664 * 299.99824 * 4 3 2 29 29 H 1.09002 * 109.47248 * 59.99579 * 4 3 2 30 30 H 0.96994 * 119.99815 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46731 * 306.04307 * 13 2 1 32 32 H 1.09003 * 109.46676 * 186.04299 * 13 2 1 33 33 H 1.07998 * 119.78913 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.61107 * 179.72549 * 18 17 16 35 35 H 1.08003 * 119.96538 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.01878 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1711 3.4645 -1.3181 6 1 2.7192 3.8325 -0.4634 7 6 1.9659 4.2816 -2.4095 8 7 1.2989 3.8333 -3.4505 9 14 2.6342 6.0261 -2.4089 10 1 4.0066 6.0306 -2.9762 11 1 1.7549 6.8933 -3.2334 12 1 2.6724 6.5410 -1.0166 13 6 1.9954 -0.7660 1.1376 14 6 1.6368 -2.2204 0.9730 15 7 2.3676 -3.0777 0.3668 16 6 1.9211 -4.3462 0.2948 17 6 2.5132 -5.4764 -0.3044 18 6 1.8872 -6.6852 -0.2653 19 6 0.6578 -6.8284 0.3627 20 6 0.0560 -5.7419 0.9563 21 6 0.6817 -4.4973 0.9261 22 16 0.2047 -2.9299 1.5711 23 1 -0.3633 0.4514 0.9233 24 1 -0.3633 0.5741 -0.8525 25 1 -0.3634 -1.0251 -0.0709 26 1 1.5612 1.9274 0.8308 27 1 3.0798 1.3443 0.1083 28 1 2.0659 1.5014 -2.1492 29 1 0.5472 2.0845 -1.4266 30 1 1.1543 4.4084 -4.2181 31 1 1.5610 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 3.4694 -5.3831 -0.7977 34 1 2.3507 -7.5415 -0.7325 35 1 0.1728 -7.7931 0.3855 36 1 -0.9009 -5.8541 1.4444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053098817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:52 Heat of formation + Delta-G solvation = 58.203183 kcal Electronic energy + Delta-G solvation = -17985.725416 eV Core-core repulsion = 15175.269393 eV Total energy + Delta-G solvation = -2810.456024 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.43369 -37.84670 -36.47656 -33.12204 -31.29168 -30.94748 -29.35098 -27.51527 -25.86323 -24.19444 -23.14661 -22.26786 -20.51815 -19.93728 -18.61458 -16.75817 -16.50805 -15.73244 -15.46491 -15.36108 -14.68271 -14.51986 -14.20727 -14.04575 -13.92268 -12.90260 -12.62152 -12.55635 -12.24361 -12.16222 -11.85347 -11.53704 -11.32743 -11.09078 -10.97786 -10.88370 -10.57744 -10.19126 -9.89033 -9.66033 -9.40450 -9.13957 -8.74741 -8.33153 -8.21979 -7.85878 -5.99273 -4.01984 0.31544 0.97197 1.17169 1.66774 2.26521 3.32799 3.38894 3.41629 3.54457 3.81194 4.38211 4.46086 4.57077 4.69592 4.87851 5.04168 5.12389 5.25818 5.36630 5.41588 5.63019 5.69083 5.72667 5.85708 5.95950 6.06073 6.17363 6.20413 6.35754 6.46078 6.51870 6.91051 7.36631 7.41434 7.64361 7.75154 7.87795 8.07026 8.41993 9.05123 9.61634 11.12096 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.038735 B = 0.003237 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.679738 B = 8647.900734 C = 8871.568278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.533 5.533 3 C 0.065 3.935 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.120 3.880 14 C 0.121 3.879 15 N -0.455 5.455 16 C 0.087 3.913 17 C -0.064 4.064 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.071 4.071 21 C -0.188 4.188 22 S 0.091 5.909 23 H 0.023 0.977 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.025 0.975 27 H 0.065 0.935 28 H 0.026 0.974 29 H 0.018 0.982 30 H 0.261 0.739 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -20.401 10.760 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.258 5.258 3 C -0.061 4.061 4 C -0.009 4.009 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.011 4.011 14 C -0.165 4.165 15 N -0.167 5.167 16 C -0.034 4.034 17 C -0.084 4.084 18 C -0.131 4.131 19 C -0.130 4.130 20 C -0.094 4.094 21 C -0.307 4.307 22 S 0.348 5.652 23 H 0.042 0.958 24 H 0.105 0.895 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.820 -19.920 10.501 22.694 hybrid contribution 0.452 0.679 0.157 0.830 sum -2.368 -19.241 10.658 22.123 Atomic orbital electron populations 1.22593 0.87726 1.01374 1.01646 1.62056 1.07905 1.16384 1.39422 1.22408 0.98857 0.83968 1.00893 1.19111 0.97013 0.94043 0.90776 1.21168 1.35274 0.97671 1.02020 0.92713 1.24994 0.95269 0.98498 0.95549 1.69972 1.40695 1.36472 1.06013 0.86588 0.78870 0.84531 0.77959 1.20623 1.21241 1.19920 1.20819 1.02470 0.84101 0.93731 1.26767 0.93026 1.00446 0.96236 1.66178 1.33469 1.00224 1.16880 1.19289 0.92184 0.91368 1.00537 1.20430 1.00172 0.89801 0.98041 1.20710 0.95554 0.97150 0.99670 1.21101 0.95653 0.98327 0.97938 1.20329 0.99555 0.89729 0.99765 1.23944 1.00309 0.99063 1.07341 1.83960 1.24817 0.99029 1.57418 0.95837 0.89550 0.92450 0.95703 0.91643 0.95584 0.96346 0.92973 0.92620 0.87594 0.84761 0.84898 0.84940 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.05 60.06 0.54 0.80 16 2 N -0.53 -9.90 4.75 -244.37 -1.16 -11.06 16 3 C 0.06 1.35 4.90 -3.82 -0.02 1.34 16 4 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 5 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 6 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.12 1.84 5.52 -4.98 -0.03 1.82 16 14 C 0.12 1.86 6.09 -13.91 -0.08 1.77 16 15 N -0.45 -7.54 10.57 -9.09 -0.10 -7.63 16 16 C 0.09 1.27 7.00 -84.96 -0.59 0.67 16 17 C -0.06 -0.75 10.05 -39.29 -0.39 -1.14 16 18 C -0.11 -0.98 9.94 -40.12 -0.40 -1.38 16 19 C -0.11 -0.91 10.04 -39.59 -0.40 -1.31 16 20 C -0.07 -0.72 10.07 -39.39 -0.40 -1.12 16 21 C -0.19 -2.45 6.56 -38.55 -0.25 -2.70 16 22 S 0.09 1.17 21.53 -107.50 -2.31 -1.15 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 1.64 6.30 -51.93 -0.33 1.32 16 25 H 0.06 0.90 6.03 -51.93 -0.31 0.59 16 26 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 27 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.02 0.50 6.47 -51.93 -0.34 0.16 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.11 1.58 7.93 -51.93 -0.41 1.17 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -32.14 315.15 -10.40 -42.54 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.72 Total: -3.71 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.57 Total: -14.15 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.52 Total: -44.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.31 Total: -1.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.14 -10.40 -42.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053098817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.745 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds