Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00411 * 2 1 4 4 C 1.53003 * 109.47008 * 293.95474 * 3 2 1 5 5 C 1.50701 * 109.47142 * 179.97438 * 4 3 2 6 6 H 1.07992 * 119.99881 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99731 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00277 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99742 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47194 * 90.00173 * 9 7 5 11 11 H 1.48497 * 109.47282 * 210.00267 * 9 7 5 12 12 H 1.48501 * 109.46969 * 330.00084 * 9 7 5 13 13 C 1.46906 * 110.99821 * 123.95385 * 2 1 3 14 14 C 1.50691 * 109.47209 * 66.04306 * 13 2 1 15 15 N 1.27933 * 124.23828 * 89.97402 * 14 13 2 16 16 C 1.34668 * 117.85007 * 180.02562 * 15 14 13 17 17 C 1.40959 * 129.69357 * 179.97438 * 16 15 14 18 18 C 1.36185 * 120.42591 * 180.02562 * 17 16 15 19 19 C 1.38790 * 120.77857 * 0.02562 * 18 17 16 20 20 C 1.37658 * 120.06491 * 359.97438 * 19 18 17 21 21 C 1.39335 * 119.95334 * 0.02562 * 20 19 18 22 22 S 1.70649 * 124.24005 * 270.00396 * 14 13 2 23 23 H 1.09005 * 109.46909 * 296.05140 * 1 2 3 24 24 H 1.09007 * 109.46752 * 56.04335 * 1 2 3 25 25 H 1.08990 * 109.47613 * 176.04580 * 1 2 3 26 26 H 1.08996 * 109.47364 * 53.95142 * 3 2 1 27 27 H 1.09002 * 109.47461 * 173.95183 * 3 2 1 28 28 H 1.09005 * 109.46664 * 299.99824 * 4 3 2 29 29 H 1.09002 * 109.47248 * 59.99579 * 4 3 2 30 30 H 0.96994 * 119.99815 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46731 * 306.04307 * 13 2 1 32 32 H 1.09003 * 109.46676 * 186.04299 * 13 2 1 33 33 H 1.07998 * 119.78913 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.61107 * 179.72549 * 18 17 16 35 35 H 1.08003 * 119.96538 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.01878 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1711 3.4645 -1.3181 6 1 2.7192 3.8325 -0.4634 7 6 1.9659 4.2816 -2.4095 8 7 1.2989 3.8333 -3.4505 9 14 2.6342 6.0261 -2.4089 10 1 4.0066 6.0306 -2.9762 11 1 1.7549 6.8933 -3.2334 12 1 2.6724 6.5410 -1.0166 13 6 1.9954 -0.7660 1.1376 14 6 1.6368 -2.2204 0.9730 15 7 2.3676 -3.0777 0.3668 16 6 1.9211 -4.3462 0.2948 17 6 2.5132 -5.4764 -0.3044 18 6 1.8872 -6.6852 -0.2653 19 6 0.6578 -6.8284 0.3627 20 6 0.0560 -5.7419 0.9563 21 6 0.6817 -4.4973 0.9261 22 16 0.2047 -2.9299 1.5711 23 1 -0.3633 0.4514 0.9233 24 1 -0.3633 0.5741 -0.8525 25 1 -0.3634 -1.0251 -0.0709 26 1 1.5612 1.9274 0.8308 27 1 3.0798 1.3443 0.1083 28 1 2.0659 1.5014 -2.1492 29 1 0.5472 2.0845 -1.4266 30 1 1.1543 4.4084 -4.2181 31 1 1.5610 -0.3872 2.0628 32 1 3.0797 -0.6611 1.1756 33 1 3.4694 -5.3831 -0.7977 34 1 2.3507 -7.5415 -0.7325 35 1 0.1728 -7.7931 0.3855 36 1 -0.9009 -5.8541 1.4444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053098817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = 37.448619 kcal Electronic energy + Delta-G solvation = -17986.625402 eV Core-core repulsion = 15175.269393 eV Total energy + Delta-G solvation = -2811.356009 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36913 -39.10763 -37.60954 -35.19531 -32.44265 -32.08339 -30.81286 -28.71571 -27.55265 -25.55976 -24.39698 -23.30076 -21.90605 -21.37301 -19.54771 -18.61024 -17.63107 -16.87196 -16.78485 -16.47018 -16.15037 -16.09926 -15.42906 -15.17658 -14.90519 -14.44868 -14.20358 -13.87255 -13.46411 -13.35348 -13.04853 -12.88142 -12.77900 -12.73140 -12.52252 -12.41189 -11.85994 -11.83642 -11.43411 -11.27121 -11.09712 -10.64593 -10.53787 -9.68428 -9.28882 -9.11119 -8.19351 -6.30791 -0.63088 0.16808 0.21625 0.66044 1.31403 1.41156 1.42886 1.53710 2.40727 2.67675 2.81388 3.12843 3.14374 3.60073 3.88001 4.09001 4.09160 4.26222 4.30443 4.34992 4.36434 4.50023 4.61126 4.66345 4.73378 4.92560 4.94943 5.06912 5.14983 5.26974 5.41720 5.45114 5.62344 5.76103 5.79503 6.02817 6.10043 6.28664 6.62557 6.86570 7.38329 8.92983 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.038735 B = 0.003237 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.679738 B = 8647.900734 C = 8871.568278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.553 5.553 3 C 0.082 3.918 4 C 0.035 3.965 5 C -0.543 4.543 6 H 0.064 0.936 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.125 3.875 14 C 0.093 3.907 15 N -0.486 5.486 16 C 0.046 3.954 17 C -0.084 4.084 18 C -0.099 4.099 19 C -0.092 4.092 20 C -0.081 4.081 21 C -0.203 4.203 22 S 0.120 5.880 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.068 0.932 28 H -0.013 1.013 29 H -0.002 1.002 30 H 0.263 0.737 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.969 -21.974 12.087 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.278 5.278 3 C -0.045 4.045 4 C -0.002 4.002 5 C -0.581 4.581 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.184 1.184 13 C -0.006 4.006 14 C -0.192 4.192 15 N -0.200 5.200 16 C -0.074 4.074 17 C -0.105 4.105 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.103 4.103 21 C -0.322 4.322 22 S 0.377 5.623 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.005 0.995 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.186 0.814 35 H 0.192 0.808 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.196 -21.504 11.849 24.759 hybrid contribution 0.533 0.926 -0.285 1.106 sum -2.663 -20.577 11.564 23.754 Atomic orbital electron populations 1.22505 0.87033 1.01837 1.01306 1.61864 1.08736 1.15177 1.42035 1.22019 0.99112 0.85249 0.98078 1.18936 0.95246 0.93700 0.92330 1.21623 1.35300 0.98710 1.02472 0.91775 1.25990 0.95429 1.03367 0.95048 1.70120 1.42050 1.38330 1.06812 0.85410 0.78154 0.78624 0.78613 1.19913 1.20814 1.18448 1.20786 1.02411 0.84166 0.93264 1.26628 0.94624 1.00235 0.97721 1.66133 1.34901 1.01539 1.17432 1.19655 0.93659 0.91385 1.02680 1.20720 1.00823 0.90319 0.98643 1.21182 0.95479 0.96941 0.98357 1.21655 0.94930 0.99423 0.95355 1.20781 1.00566 0.88961 1.00036 1.24247 1.00226 1.00150 1.07582 1.83615 1.22960 0.98949 1.56817 0.93932 0.92353 0.91193 0.94599 0.91351 0.99485 0.98395 0.92808 0.90208 0.87846 0.84660 0.81363 0.80806 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.05 127.69 1.16 1.90 16 2 N -0.55 -21.01 4.75 -927.06 -4.41 -25.42 16 3 C 0.08 3.50 4.90 86.30 0.42 3.92 16 4 C 0.04 1.92 4.90 29.85 0.15 2.07 16 5 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 6 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 8 N -0.93 -57.93 13.29 21.45 0.28 -57.64 16 9 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 C 0.12 3.84 5.52 85.55 0.47 4.31 16 14 C 0.09 2.88 6.09 88.67 0.54 3.42 16 15 N -0.49 -16.59 10.57 -182.52 -1.93 -18.52 16 16 C 0.05 1.34 7.00 39.78 0.28 1.62 16 17 C -0.08 -1.91 10.05 22.46 0.23 -1.68 16 18 C -0.10 -1.46 9.94 21.92 0.22 -1.24 16 19 C -0.09 -1.18 10.04 22.26 0.22 -0.96 16 20 C -0.08 -1.41 10.07 22.40 0.23 -1.18 16 21 C -0.20 -5.10 6.56 22.94 0.15 -4.95 16 22 S 0.12 2.99 21.53 -56.49 -1.22 1.78 16 23 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.06 2.33 6.30 -2.38 -0.02 2.32 16 25 H 0.07 2.22 6.03 -2.39 -0.01 2.21 16 26 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 27 H 0.07 2.83 7.93 -2.39 -0.02 2.81 16 28 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 29 H 0.00 -0.13 6.47 -2.39 -0.02 -0.14 16 30 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 32 H 0.10 3.16 7.93 -2.39 -0.02 3.14 16 33 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.38 315.15 0.59 -71.80 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.07 Total: 4.63 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 4.75 Total: -23.29 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -6.05 Total: -101.58 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.22 Total: 1.78 kcal Total: -72.38 0.59 -71.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053098817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.245 kcal (2) G-P(sol) polarization free energy of solvation -72.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds