Wall clock time and date at job start Mon Mar 30 2020 01:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47153 * 2 1 4 4 C 1.38541 * 126.38427 * 270.18349 * 3 2 1 5 5 C 1.38650 * 133.88237 * 359.96902 * 4 3 2 6 6 C 1.37974 * 119.85666 * 180.35934 * 5 4 3 7 7 C 1.38700 * 120.42733 * 359.95633 * 6 5 4 8 8 C 1.37691 * 120.49874 * 0.04417 * 7 6 5 9 9 C 1.39722 * 119.77867 * 359.97438 * 8 7 6 10 10 N 1.35865 * 133.37718 * 179.97438 * 9 8 7 11 11 C 1.31049 * 109.62354 * 180.02562 * 10 9 8 12 12 S 1.76199 * 125.08090 * 180.02562 * 11 10 9 13 13 C 1.81002 * 100.00182 * 0.02845 * 12 11 10 14 14 C 1.52998 * 109.47085 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46615 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00439 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99466 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00156 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99470 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47403 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46873 * 119.99891 * 19 17 15 22 22 H 1.48500 * 109.47022 * 239.99511 * 19 17 15 23 23 H 1.08996 * 109.47743 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47391 * 299.99742 * 1 2 3 25 25 H 1.09002 * 109.47106 * 59.99972 * 1 2 3 26 26 H 1.08998 * 109.46735 * 239.99676 * 2 1 3 27 27 H 1.09002 * 109.46910 * 120.00544 * 2 1 3 28 28 H 1.08003 * 120.07233 * 0.36056 * 5 4 3 29 29 H 1.07996 * 119.78949 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.74806 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.10634 * 179.97438 * 8 7 6 32 32 H 1.09005 * 109.46889 * 299.99975 * 13 12 11 33 33 H 1.09000 * 109.47231 * 59.99947 * 13 12 11 34 34 H 1.09001 * 109.47131 * 299.99123 * 14 13 12 35 35 H 1.08996 * 109.47558 * 60.00200 * 14 13 12 36 36 H 0.97000 * 119.99592 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2889 2.1572 -1.1153 5 6 2.2071 1.9375 -2.4819 6 6 2.5658 2.9384 -3.3612 7 6 3.0073 4.1649 -2.8872 8 6 3.0948 4.4005 -1.5334 9 6 2.7357 3.3971 -0.6298 10 7 2.7138 3.3274 0.7269 11 6 2.2896 2.1449 1.1000 12 16 2.1029 1.6167 2.7706 13 6 2.6412 3.1129 3.6354 14 6 2.5626 2.8848 5.1462 15 6 3.0103 4.1308 5.8661 16 1 3.3202 4.9983 5.3025 17 6 3.0241 4.1631 7.2445 18 7 2.6462 3.1069 7.9309 19 14 3.5797 5.7073 8.1369 20 1 3.9505 6.7469 7.1435 21 1 2.4735 6.2109 8.9902 22 1 4.7560 5.3918 8.9866 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8634 0.9849 -2.8572 29 1 2.5021 2.7660 -4.4254 30 1 3.2849 4.9408 -3.5853 31 1 3.4398 5.3577 -1.1713 32 1 3.6692 3.3439 3.3561 33 1 1.9938 3.9451 3.3590 34 1 1.5348 2.6537 5.4258 35 1 3.2103 2.0527 5.4223 36 1 2.6563 3.1296 8.9006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057471637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:16 Heat of formation + Delta-G solvation = 54.963874 kcal Electronic energy + Delta-G solvation = -18101.078430 eV Core-core repulsion = 15290.481939 eV Total energy + Delta-G solvation = -2810.596491 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.88610 -37.28619 -35.01419 -33.73200 -31.24566 -30.94115 -29.36584 -29.31337 -25.34007 -23.98897 -23.53925 -22.08456 -21.13674 -20.44654 -17.36969 -17.26919 -16.57725 -16.40809 -15.60412 -14.73224 -14.51764 -14.48999 -14.27942 -13.77621 -13.72419 -13.42277 -13.08850 -12.45051 -12.17081 -12.08618 -11.81245 -11.67150 -11.51525 -11.38925 -11.04942 -10.62374 -10.39720 -10.26371 -10.18007 -9.83323 -9.69986 -9.16651 -8.85590 -8.44771 -8.13477 -7.19078 -6.09009 -4.12760 0.92730 1.45935 1.51853 2.60725 2.74990 2.88428 3.29083 3.36729 3.42152 3.90406 4.37770 4.41885 4.46898 4.80323 4.88978 4.95484 5.02087 5.25062 5.27526 5.31495 5.39522 5.47045 5.57875 5.75444 5.89248 6.02537 6.10072 6.21845 6.40137 6.47879 6.56258 6.69890 6.86797 6.98383 7.47668 7.53813 7.86809 7.87536 8.23750 8.92163 9.51612 11.02060 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.003992 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.157022 B = 7011.739838 C = 8030.658192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.480 5.480 4 C 0.048 3.952 5 C -0.109 4.109 6 C -0.112 4.112 7 C -0.131 4.131 8 C -0.068 4.068 9 C 0.060 3.940 10 N -0.496 5.496 11 C 0.278 3.722 12 S -0.041 6.041 13 C -0.070 4.070 14 C 0.034 3.966 15 C -0.517 4.517 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -5.724 -20.768 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.173 5.173 4 C -0.062 4.062 5 C -0.130 4.130 6 C -0.132 4.132 7 C -0.151 4.151 8 C -0.089 4.089 9 C -0.060 4.060 10 N -0.220 5.220 11 C -0.095 4.095 12 S 0.192 5.808 13 C -0.219 4.219 14 C -0.005 4.005 15 C -0.557 4.557 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.799 -6.346 -19.577 20.769 hybrid contribution 0.436 1.211 -0.490 1.377 sum -2.363 -5.135 -20.067 20.848 Atomic orbital electron populations 1.22173 0.94068 1.03149 1.03490 1.21801 0.95802 0.79310 1.04552 1.45357 1.55420 1.12721 1.03820 1.18940 1.05151 0.92911 0.89197 1.19855 1.04358 1.00100 0.88737 1.20792 1.00442 0.93132 0.98878 1.20833 1.02189 0.97525 0.94590 1.20290 0.99500 0.97690 0.91412 1.19151 1.02939 0.93620 0.90331 1.71120 1.23546 1.16844 1.10482 1.25895 0.99021 0.89386 0.95191 1.85705 1.82733 1.25919 0.86397 1.23979 1.04209 0.93104 1.00568 1.19005 0.98520 0.98410 0.84575 1.21096 1.44747 0.98695 0.91161 0.92015 1.25006 0.95155 0.96530 0.97547 1.69971 1.47466 1.28815 1.06873 0.86436 0.78343 0.83012 0.79668 1.19536 1.20888 1.20883 0.90430 0.91120 0.92116 0.89286 0.88431 0.86446 0.85612 0.85567 0.85403 0.89634 0.89619 0.95425 0.95427 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.11 1.13 6.66 -4.04 -0.03 1.11 16 3 N -0.48 -7.11 2.83 -114.33 -0.32 -7.43 16 4 C 0.05 0.72 6.87 -83.84 -0.58 0.14 16 5 C -0.11 -1.27 10.04 -39.53 -0.40 -1.67 16 6 C -0.11 -1.15 10.03 -39.51 -0.40 -1.54 16 7 C -0.13 -1.43 10.01 -39.61 -0.40 -1.83 16 8 C -0.07 -0.96 10.10 -39.23 -0.40 -1.35 16 9 C 0.06 1.03 7.22 -84.69 -0.61 0.42 16 10 N -0.50 -9.62 10.57 -10.91 -0.12 -9.73 16 11 C 0.28 4.94 7.93 -88.45 -0.70 4.24 16 12 S -0.04 -0.74 21.54 -107.50 -2.32 -3.05 16 13 C -0.07 -1.51 5.09 37.16 0.19 -1.32 16 14 C 0.03 0.87 4.98 -27.88 -0.14 0.73 16 15 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 16 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 19 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.10 1.01 7.68 -51.93 -0.40 0.61 16 28 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.08 1.87 8.14 -51.91 -0.42 1.45 16 33 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -31.51 323.93 -10.65 -42.16 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.01 Total: -2.30 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -3.48 Total: -15.42 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.30 Total: -42.67 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.32 Total: -3.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.51 -10.65 -42.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057471637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.127 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds