Wall clock time and date at job start Mon Mar 30 2020 01:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47153 * 2 1 4 4 C 1.38541 * 126.38427 * 270.18349 * 3 2 1 5 5 C 1.38650 * 133.88237 * 359.96902 * 4 3 2 6 6 C 1.37974 * 119.85666 * 180.35934 * 5 4 3 7 7 C 1.38700 * 120.42733 * 359.95633 * 6 5 4 8 8 C 1.37691 * 120.49874 * 0.04417 * 7 6 5 9 9 C 1.39722 * 119.77867 * 359.97438 * 8 7 6 10 10 N 1.35865 * 133.37718 * 179.97438 * 9 8 7 11 11 C 1.31049 * 109.62354 * 180.02562 * 10 9 8 12 12 S 1.76199 * 125.08090 * 180.02562 * 11 10 9 13 13 C 1.81002 * 100.00182 * 0.02845 * 12 11 10 14 14 C 1.52998 * 109.47085 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46615 * 180.02562 * 14 13 12 16 16 H 1.07991 * 120.00439 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99466 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00156 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99470 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47403 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46873 * 119.99891 * 19 17 15 22 22 H 1.48500 * 109.47022 * 239.99511 * 19 17 15 23 23 H 1.08996 * 109.47743 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47391 * 299.99742 * 1 2 3 25 25 H 1.09002 * 109.47106 * 59.99972 * 1 2 3 26 26 H 1.08998 * 109.46735 * 239.99676 * 2 1 3 27 27 H 1.09002 * 109.46910 * 120.00544 * 2 1 3 28 28 H 1.08003 * 120.07233 * 0.36056 * 5 4 3 29 29 H 1.07996 * 119.78949 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.74806 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.10634 * 179.97438 * 8 7 6 32 32 H 1.09005 * 109.46889 * 299.99975 * 13 12 11 33 33 H 1.09000 * 109.47231 * 59.99947 * 13 12 11 34 34 H 1.09001 * 109.47131 * 299.99123 * 14 13 12 35 35 H 1.08996 * 109.47558 * 60.00200 * 14 13 12 36 36 H 0.97000 * 119.99592 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2889 2.1572 -1.1153 5 6 2.2071 1.9375 -2.4819 6 6 2.5658 2.9384 -3.3612 7 6 3.0073 4.1649 -2.8872 8 6 3.0948 4.4005 -1.5334 9 6 2.7357 3.3971 -0.6298 10 7 2.7138 3.3274 0.7269 11 6 2.2896 2.1449 1.1000 12 16 2.1029 1.6167 2.7706 13 6 2.6412 3.1129 3.6354 14 6 2.5626 2.8848 5.1462 15 6 3.0103 4.1308 5.8661 16 1 3.3202 4.9983 5.3025 17 6 3.0241 4.1631 7.2445 18 7 2.6462 3.1069 7.9309 19 14 3.5797 5.7073 8.1369 20 1 3.9505 6.7469 7.1435 21 1 2.4735 6.2109 8.9902 22 1 4.7560 5.3918 8.9866 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8634 0.9849 -2.8572 29 1 2.5021 2.7660 -4.4254 30 1 3.2849 4.9408 -3.5853 31 1 3.4398 5.3577 -1.1713 32 1 3.6692 3.3439 3.3561 33 1 1.9938 3.9451 3.3590 34 1 1.5348 2.6537 5.4258 35 1 3.2103 2.0527 5.4223 36 1 2.6563 3.1296 8.9006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057471637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:15 Heat of formation + Delta-G solvation = 38.421575 kcal Electronic energy + Delta-G solvation = -18101.795758 eV Core-core repulsion = 15290.481939 eV Total energy + Delta-G solvation = -2811.313819 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.99513 -38.23945 -36.09592 -35.76185 -32.98902 -32.16166 -30.42637 -30.29551 -27.39178 -24.88874 -24.73098 -23.32706 -22.77146 -21.53573 -18.72727 -18.50994 -18.25596 -17.53194 -16.73989 -16.53045 -15.90604 -15.61777 -15.39385 -15.21637 -14.97583 -14.64698 -14.06937 -13.96922 -13.67791 -13.19077 -13.06234 -12.93055 -12.78508 -12.50130 -12.39348 -12.24695 -12.23458 -11.86814 -11.72527 -11.41626 -11.20616 -11.00086 -10.62240 -10.04255 -9.13716 -8.53018 -8.25438 -6.37519 -0.11882 0.07731 0.54656 1.09553 1.40796 1.41411 1.55214 1.58933 1.74814 2.40215 2.89287 3.08443 3.34929 3.63561 3.97489 4.01350 4.12100 4.17427 4.26208 4.32119 4.37596 4.41140 4.49495 4.70898 4.76529 4.79977 4.88329 5.13774 5.18298 5.33697 5.41437 5.42747 5.55964 5.57646 5.70979 5.93180 5.95108 6.09614 6.68548 6.74513 7.31549 8.86494 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.003992 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.157022 B = 7011.739838 C = 8030.658192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.473 5.473 4 C 0.038 3.962 5 C -0.110 4.110 6 C -0.097 4.097 7 C -0.118 4.118 8 C -0.093 4.093 9 C 0.014 3.986 10 N -0.536 5.536 11 C 0.250 3.750 12 S -0.013 6.013 13 C -0.062 4.062 14 C 0.044 3.956 15 C -0.542 4.542 16 H 0.061 0.939 17 C 0.008 3.992 18 N -0.927 5.927 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.275 1.275 23 H 0.107 0.893 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.150 0.850 29 H 0.170 0.830 30 H 0.161 0.839 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.008 0.992 35 H 0.009 0.991 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 -6.058 -23.829 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.165 5.165 4 C -0.073 4.073 5 C -0.131 4.131 6 C -0.117 4.117 7 C -0.138 4.138 8 C -0.114 4.114 9 C -0.106 4.106 10 N -0.260 5.260 11 C -0.123 4.123 12 S 0.220 5.780 13 C -0.211 4.211 14 C 0.004 3.996 15 C -0.582 4.582 16 H 0.079 0.921 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.200 1.200 23 H 0.125 0.875 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.139 0.861 27 H 0.114 0.886 28 H 0.168 0.832 29 H 0.187 0.813 30 H 0.178 0.822 31 H 0.143 0.857 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.886 -6.697 -22.658 23.802 hybrid contribution 0.451 1.289 0.207 1.381 sum -2.434 -5.408 -22.452 23.222 Atomic orbital electron populations 1.22141 0.93038 1.04695 1.02317 1.22188 0.96644 0.77440 1.06051 1.45545 1.54453 1.13674 1.02857 1.19355 1.05316 0.92180 0.90432 1.20331 1.03679 1.01979 0.87129 1.21376 0.97570 0.91906 1.00847 1.21291 1.00118 0.98858 0.93571 1.20551 1.00751 0.97384 0.92672 1.19629 1.05352 0.95863 0.89753 1.70966 1.24354 1.18062 1.12667 1.25584 1.01167 0.90166 0.95394 1.85282 1.83035 1.22761 0.86926 1.23488 1.03632 0.95187 0.98807 1.18757 0.96597 0.97040 0.87160 1.21481 1.45101 0.99547 0.92033 0.92116 1.25920 0.94967 0.99899 0.98354 1.70079 1.48271 1.30913 1.07396 0.85341 0.78140 0.78896 0.78336 1.18905 1.20042 1.20022 0.87469 0.93545 0.91976 0.86142 0.88572 0.83212 0.81269 0.82176 0.85729 0.90574 0.90590 0.97325 0.97304 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.24 71.98 0.74 -2.04 16 2 C 0.10 1.88 6.66 86.38 0.58 2.46 16 3 N -0.47 -13.75 2.83 -515.63 -1.46 -15.21 16 4 C 0.04 1.07 6.87 38.72 0.27 1.34 16 5 C -0.11 -2.15 10.04 22.31 0.22 -1.93 16 6 C -0.10 -1.53 10.03 22.32 0.22 -1.31 16 7 C -0.12 -2.21 10.01 22.25 0.22 -1.99 16 8 C -0.09 -2.56 10.10 22.50 0.23 -2.33 16 9 C 0.01 0.49 7.22 39.42 0.28 0.77 16 10 N -0.54 -21.73 10.57 -188.42 -1.99 -23.72 16 11 C 0.25 9.21 7.93 179.59 1.42 10.63 16 12 S -0.01 -0.49 21.54 -56.49 -1.22 -1.70 16 13 C -0.06 -2.84 5.09 71.98 0.37 -2.48 16 14 C 0.04 2.34 4.98 29.85 0.15 2.49 16 15 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 16 H 0.06 3.43 7.74 -2.92 -0.02 3.41 16 17 C 0.01 0.43 5.46 84.66 0.46 0.90 16 18 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 19 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.89 7.68 -2.39 -0.02 1.87 16 28 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.08 3.55 8.14 -2.40 -0.02 3.53 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -71.90 323.93 4.10 -67.80 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.06 Total: 6.38 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 5.40 Total: -24.56 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -3.17 Total: -94.44 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -1.22 Total: -1.70 kcal Total: -71.90 4.10 -67.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057471637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.221 kcal (2) G-P(sol) polarization free energy of solvation -71.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds