Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 119.91679 * 2 1 4 4 C 1.38386 * 120.34996 * 180.23434 * 3 2 1 5 5 C 1.37908 * 120.16853 * 359.48269 * 4 3 2 6 6 C 1.50699 * 120.08589 * 180.23390 * 5 4 3 7 7 C 1.39830 * 119.82749 * 0.51442 * 5 4 3 8 8 C 1.47164 * 120.17646 * 179.72149 * 7 5 4 9 9 O 1.21261 * 119.99815 * 354.00360 * 8 7 5 10 10 C 1.50699 * 120.00415 * 174.00018 * 8 7 5 11 11 C 1.52998 * 109.47308 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47364 * 180.02562 * 11 10 8 13 13 O 1.21216 * 119.99791 * 359.97438 * 12 11 10 14 14 O 1.34307 * 120.00432 * 180.02562 * 12 11 10 15 15 C 1.34922 * 117.00456 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99425 * 359.97438 * 15 14 12 17 17 C 1.38752 * 120.00204 * 179.97438 * 15 14 12 18 18 N 1.31441 * 119.99983 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00041 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47155 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46721 * 119.99770 * 19 17 15 22 22 H 1.48500 * 109.47262 * 240.00056 * 19 17 15 23 23 C 1.37869 * 119.91049 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47071 * 89.99796 * 1 2 3 25 25 H 1.08993 * 109.47570 * 210.00424 * 1 2 3 26 26 H 1.08999 * 109.46899 * 330.00373 * 1 2 3 27 27 H 1.08001 * 119.82784 * 359.95331 * 3 2 1 28 28 H 1.07998 * 119.91557 * 179.74114 * 4 3 2 29 29 H 1.09008 * 109.46962 * 263.64117 * 6 5 4 30 30 H 1.08997 * 109.47440 * 23.64029 * 6 5 4 31 31 H 1.08997 * 109.47140 * 143.64445 * 6 5 4 32 32 H 1.09000 * 109.47424 * 300.00375 * 10 8 7 33 33 H 1.09003 * 109.46570 * 60.00481 * 10 8 7 34 34 H 1.09000 * 109.47159 * 300.00507 * 11 10 8 35 35 H 1.09000 * 109.47231 * 59.99962 * 11 10 8 36 36 H 0.97002 * 120.00117 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.08679 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5812 1.2103 -0.0049 5 6 4.2833 0.0233 0.0010 6 6 5.7902 0.0369 0.0010 7 6 3.5933 -1.1929 0.0010 8 6 4.3347 -2.4641 0.0010 9 8 5.5424 -2.4616 -0.1087 10 6 3.5933 -3.7690 0.1374 11 6 4.5915 -4.9282 0.1089 12 6 3.8500 -6.2331 0.2447 13 8 2.6428 -6.2357 0.3540 14 8 4.5268 -7.3932 0.2456 15 6 3.8027 -8.5248 0.3701 16 1 2.7281 -8.4706 0.4636 17 6 4.4385 -9.7580 0.3781 18 7 5.7463 -9.8239 0.2638 19 14 3.4360 -11.3247 0.5511 20 1 1.9956 -10.9809 0.6620 21 1 3.6491 -12.1829 -0.6418 22 1 3.8662 -12.0556 1.7701 23 6 2.1945 -1.1951 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6532 2.1327 -0.0008 28 1 4.1127 2.1504 -0.0091 29 1 6.1546 -0.0787 -1.0199 30 1 6.1451 0.9835 0.4084 31 1 6.1610 -0.7844 0.6142 32 1 3.0499 -3.7811 1.0822 33 1 2.8894 -3.8748 -0.6880 34 1 5.1353 -4.9162 -0.8357 35 1 5.2952 -4.8221 0.9345 36 1 6.1909 -10.6860 0.2697 37 1 1.6544 -2.1304 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058070609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = -108.077613 kcal Electronic energy + Delta-G solvation = -20225.645738 eV Core-core repulsion = 16932.933616 eV Total energy + Delta-G solvation = -3292.712122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44464 -39.00957 -38.36089 -35.32958 -33.96520 -32.75237 -32.11261 -31.29956 -29.41932 -26.60569 -25.29608 -24.66004 -23.48981 -21.24050 -19.78900 -19.24629 -17.70750 -17.00534 -16.04609 -15.93159 -15.73656 -15.63206 -14.67335 -14.59131 -14.37688 -14.07438 -13.90053 -13.79006 -13.36094 -13.03045 -12.78060 -12.51589 -12.36618 -11.99202 -11.84543 -11.72254 -11.54499 -11.51782 -11.23307 -11.19683 -10.85669 -10.39106 -10.34822 -9.76816 -9.40208 -9.15000 -9.00757 -8.68876 -8.55777 -6.38173 -4.06372 0.56212 1.14512 2.37174 3.11680 3.20371 3.27978 3.56473 3.57089 3.79564 4.09749 4.51714 4.57318 4.73194 4.76590 4.95605 5.01993 5.10145 5.14106 5.30692 5.38169 5.41667 5.45981 5.53683 5.56052 5.67269 5.80504 5.83637 5.89946 6.03260 6.13405 6.21300 6.30520 6.33929 6.43435 6.72141 6.80603 7.42121 7.57854 7.98193 8.73595 9.10459 9.89159 10.79972 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.003309 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.018364 B = 8460.679554 C = 9338.686801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C -0.088 4.088 4 C -0.135 4.135 5 C -0.031 4.031 6 C -0.123 4.123 7 C -0.165 4.165 8 C 0.395 3.605 9 O -0.446 6.446 10 C -0.149 4.149 11 C -0.094 4.094 12 C 0.398 3.602 13 O -0.562 6.562 14 O -0.214 6.214 15 C -0.383 4.383 16 H 0.096 0.904 17 C 0.041 3.959 18 N -0.865 5.865 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.067 4.067 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.269 0.731 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 21.466 -0.617 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.106 4.106 4 C -0.153 4.153 5 C -0.032 4.032 6 C -0.179 4.179 7 C -0.166 4.166 8 C 0.274 3.726 9 O -0.322 6.322 10 C -0.186 4.186 11 C -0.132 4.132 12 C 0.245 3.755 13 O -0.460 6.460 14 O -0.121 6.121 15 C -0.459 4.459 16 H 0.114 0.886 17 C -0.163 4.163 18 N -0.502 5.502 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.085 4.085 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.250 21.273 -0.652 21.921 hybrid contribution -0.579 -0.699 0.063 0.910 sum -5.829 20.574 -0.589 21.392 Atomic orbital electron populations 1.20794 0.90722 1.03038 1.02524 1.19882 0.96443 0.92916 1.01595 1.21254 0.94167 0.97640 0.97566 1.21024 0.94090 0.97575 1.02638 1.20238 0.96756 0.91896 0.94265 1.21099 0.90239 1.03003 1.03580 1.20395 0.94292 0.94478 1.07461 1.22537 0.88724 0.89944 0.71433 1.90481 1.16217 1.89398 1.36071 1.21771 0.99525 0.91455 1.05826 1.20837 0.97893 0.89046 1.05438 1.23147 0.86936 0.86900 0.78561 1.90538 1.15883 1.88298 1.51254 1.83884 1.39980 1.13286 1.74964 1.21278 0.92263 0.80782 1.51596 0.88635 1.25348 0.96078 0.98583 0.96296 1.70009 1.07832 1.25924 1.46412 0.85623 0.79504 0.80037 0.78127 1.18966 1.20193 1.20186 1.21456 0.92831 0.98526 0.95690 0.91074 0.91123 0.91563 0.85794 0.85588 0.90575 0.92365 0.88873 0.87612 0.87610 0.88579 0.88578 0.92142 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.11 -1.03 5.87 -104.69 -0.61 -1.65 16 3 C -0.09 -0.78 9.69 -39.46 -0.38 -1.16 16 4 C -0.14 -1.29 9.66 -39.65 -0.38 -1.67 16 5 C -0.03 -0.36 5.92 -104.15 -0.62 -0.98 16 6 C -0.12 -1.35 8.73 36.01 0.31 -1.04 16 7 C -0.17 -2.07 5.87 -105.07 -0.62 -2.68 16 8 C 0.40 5.61 7.05 -30.69 -0.22 5.40 16 9 O -0.45 -7.15 12.98 5.57 0.07 -7.08 16 10 C -0.15 -2.25 3.69 -27.88 -0.10 -2.35 16 11 C -0.09 -1.76 5.10 -27.88 -0.14 -1.90 16 12 C 0.40 9.83 7.91 36.01 0.28 10.11 16 13 O -0.56 -14.70 15.22 -19.06 -0.29 -14.99 16 14 O -0.21 -6.27 9.75 -20.70 -0.20 -6.47 16 15 C -0.38 -11.50 9.65 30.92 0.30 -11.20 16 16 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 17 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 18 N -0.86 -25.81 13.67 55.48 0.76 -25.06 16 19 Si 0.94 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 23 C -0.07 -0.74 9.12 -39.10 -0.36 -1.09 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 29 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 31 H 0.09 1.19 5.86 -51.93 -0.30 0.88 16 32 H 0.11 1.54 8.10 -51.93 -0.42 1.12 16 33 H 0.11 1.53 7.86 -51.93 -0.41 1.12 16 34 H 0.10 1.73 8.10 -51.93 -0.42 1.31 16 35 H 0.10 1.73 8.10 -51.93 -0.42 1.31 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 37 H 0.14 1.38 6.99 -52.48 -0.37 1.01 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -34.22 323.02 -6.87 -41.09 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.78 Total: 0.74 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.27 Total: -9.59 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.76 Total: -25.06 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.42 Total: -28.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.22 -6.87 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058070609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.991 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds