Wall clock time and date at job start Mon Mar 30 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 119.91679 * 2 1 4 4 C 1.38386 * 120.34996 * 180.23434 * 3 2 1 5 5 C 1.37908 * 120.16853 * 359.48269 * 4 3 2 6 6 C 1.50699 * 120.08589 * 180.23390 * 5 4 3 7 7 C 1.39830 * 119.82749 * 0.51442 * 5 4 3 8 8 C 1.47164 * 120.17646 * 179.72149 * 7 5 4 9 9 O 1.21261 * 119.99815 * 354.00360 * 8 7 5 10 10 C 1.50699 * 120.00415 * 174.00018 * 8 7 5 11 11 C 1.52998 * 109.47308 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47364 * 180.02562 * 11 10 8 13 13 O 1.21216 * 119.99791 * 359.97438 * 12 11 10 14 14 O 1.34307 * 120.00432 * 180.02562 * 12 11 10 15 15 C 1.34922 * 117.00456 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99425 * 359.97438 * 15 14 12 17 17 C 1.38752 * 120.00204 * 179.97438 * 15 14 12 18 18 N 1.31441 * 119.99983 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00041 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47155 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46721 * 119.99770 * 19 17 15 22 22 H 1.48500 * 109.47262 * 240.00056 * 19 17 15 23 23 C 1.37869 * 119.91049 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47071 * 89.99796 * 1 2 3 25 25 H 1.08993 * 109.47570 * 210.00424 * 1 2 3 26 26 H 1.08999 * 109.46899 * 330.00373 * 1 2 3 27 27 H 1.08001 * 119.82784 * 359.95331 * 3 2 1 28 28 H 1.07998 * 119.91557 * 179.74114 * 4 3 2 29 29 H 1.09008 * 109.46962 * 263.64117 * 6 5 4 30 30 H 1.08997 * 109.47440 * 23.64029 * 6 5 4 31 31 H 1.08997 * 109.47140 * 143.64445 * 6 5 4 32 32 H 1.09000 * 109.47424 * 300.00375 * 10 8 7 33 33 H 1.09003 * 109.46570 * 60.00481 * 10 8 7 34 34 H 1.09000 * 109.47159 * 300.00507 * 11 10 8 35 35 H 1.09000 * 109.47231 * 59.99962 * 11 10 8 36 36 H 0.97002 * 120.00117 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.08679 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5812 1.2103 -0.0049 5 6 4.2833 0.0233 0.0010 6 6 5.7902 0.0369 0.0010 7 6 3.5933 -1.1929 0.0010 8 6 4.3347 -2.4641 0.0010 9 8 5.5424 -2.4616 -0.1087 10 6 3.5933 -3.7690 0.1374 11 6 4.5915 -4.9282 0.1089 12 6 3.8500 -6.2331 0.2447 13 8 2.6428 -6.2357 0.3540 14 8 4.5268 -7.3932 0.2456 15 6 3.8027 -8.5248 0.3701 16 1 2.7281 -8.4706 0.4636 17 6 4.4385 -9.7580 0.3781 18 7 5.7463 -9.8239 0.2638 19 14 3.4360 -11.3247 0.5511 20 1 1.9956 -10.9809 0.6620 21 1 3.6491 -12.1829 -0.6418 22 1 3.8662 -12.0556 1.7701 23 6 2.1945 -1.1951 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6532 2.1327 -0.0008 28 1 4.1127 2.1504 -0.0091 29 1 6.1546 -0.0787 -1.0199 30 1 6.1451 0.9835 0.4084 31 1 6.1610 -0.7844 0.6142 32 1 3.0499 -3.7811 1.0822 33 1 2.8894 -3.8748 -0.6880 34 1 5.1353 -4.9162 -0.8357 35 1 5.2952 -4.8221 0.9345 36 1 6.1909 -10.6860 0.2697 37 1 1.6544 -2.1304 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058070609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:59 Heat of formation + Delta-G solvation = -127.178631 kcal Electronic energy + Delta-G solvation = -20226.474021 eV Core-core repulsion = 16932.933616 eV Total energy + Delta-G solvation = -3293.540404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51178 -40.91194 -39.40726 -37.39975 -34.79562 -34.33159 -34.04949 -32.29930 -30.16554 -28.25451 -26.77321 -25.76406 -24.48935 -22.39530 -21.28263 -20.43174 -19.89249 -18.66176 -17.39999 -17.28377 -16.80360 -16.53408 -16.35996 -16.16680 -16.12643 -15.15614 -14.97929 -14.86690 -14.29215 -14.25177 -13.87902 -13.74130 -13.59390 -13.31399 -13.07570 -13.01374 -12.79102 -12.52980 -12.47072 -12.40242 -12.21085 -12.16005 -11.99322 -11.95488 -11.07406 -10.71406 -10.49848 -9.95164 -9.46021 -8.54985 -6.35670 -0.33153 0.37713 1.28773 1.34008 1.38180 1.53316 1.62469 2.08945 2.56549 2.75746 2.96233 3.19354 3.64156 3.80200 3.87003 4.03297 4.06466 4.18915 4.28440 4.43157 4.56965 4.65373 4.74616 4.75819 4.77785 4.79878 4.85439 4.88318 4.93987 5.04494 5.16182 5.17944 5.30666 5.36134 5.57986 5.61165 5.81971 5.97949 6.47101 6.63648 6.89929 7.75305 8.66313 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.003309 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.018364 B = 8460.679554 C = 9338.686801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.112 4.112 3 C -0.081 4.081 4 C -0.135 4.135 5 C -0.047 4.047 6 C -0.120 4.120 7 C -0.187 4.187 8 C 0.402 3.598 9 O -0.471 6.471 10 C -0.141 4.141 11 C -0.084 4.084 12 C 0.398 3.602 13 O -0.577 6.577 14 O -0.249 6.249 15 C -0.423 4.423 16 H 0.085 0.915 17 C -0.007 4.007 18 N -0.905 5.905 19 Si 1.020 2.980 20 H -0.262 1.262 21 H -0.260 1.260 22 H -0.260 1.260 23 C -0.078 4.078 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.279 0.721 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 22.888 -0.558 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.112 4.112 3 C -0.099 4.099 4 C -0.153 4.153 5 C -0.047 4.047 6 C -0.176 4.176 7 C -0.188 4.188 8 C 0.283 3.717 9 O -0.349 6.349 10 C -0.178 4.178 11 C -0.122 4.122 12 C 0.246 3.754 13 O -0.475 6.475 14 O -0.157 6.157 15 C -0.498 4.498 16 H 0.103 0.897 17 C -0.207 4.207 18 N -0.543 5.543 19 Si 0.839 3.161 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.185 1.185 23 C -0.096 4.096 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.174 0.826 28 H 0.170 0.830 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.702 22.725 -0.594 23.700 hybrid contribution -0.168 -0.983 0.040 0.998 sum -6.869 21.742 -0.554 22.808 Atomic orbital electron populations 1.20848 0.88997 1.03887 1.03281 1.20217 0.97778 0.92623 1.00627 1.21667 0.94077 0.98640 0.95529 1.21337 0.94643 0.97723 1.01566 1.20420 0.97013 0.92394 0.94902 1.21036 0.90301 1.03336 1.02939 1.20278 0.94898 0.93774 1.09820 1.22511 0.88336 0.90234 0.70619 1.90484 1.17082 1.89670 1.37647 1.21739 0.98837 0.90765 1.06506 1.20910 0.98377 0.86907 1.06011 1.24263 0.87159 0.87525 0.76457 1.90504 1.16881 1.88642 1.51459 1.83909 1.41075 1.14413 1.76300 1.21520 0.92164 0.82020 1.54111 0.89706 1.26619 0.97441 1.01920 0.94747 1.70099 1.09704 1.27639 1.46823 0.84531 0.77618 0.74794 0.79163 1.18575 1.18464 1.18454 1.21585 0.92323 0.99566 0.96095 0.90272 0.91299 0.89770 0.82628 0.83039 0.91123 0.90064 0.91065 0.87062 0.86933 0.87860 0.87854 0.91194 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.61 16 2 C -0.11 -1.88 5.87 -19.91 -0.12 -1.99 16 3 C -0.08 -1.16 9.69 22.35 0.22 -0.95 16 4 C -0.14 -2.20 9.66 22.23 0.21 -1.99 16 5 C -0.05 -1.03 5.92 -19.56 -0.12 -1.15 16 6 C -0.12 -2.57 8.73 71.24 0.62 -1.95 16 7 C -0.19 -4.59 5.87 -20.15 -0.12 -4.71 16 8 C 0.40 11.57 7.05 28.03 0.20 11.77 16 9 O -0.47 -15.47 12.98 -2.97 -0.04 -15.51 16 10 C -0.14 -4.31 3.69 29.85 0.11 -4.20 16 11 C -0.08 -3.22 5.10 29.85 0.15 -3.06 16 12 C 0.40 20.24 7.91 71.24 0.56 20.80 16 13 O -0.58 -30.87 15.22 20.75 0.32 -30.55 16 14 O -0.25 -15.09 9.75 14.89 0.15 -14.94 16 15 C -0.42 -26.12 9.65 67.94 0.66 -25.47 16 16 H 0.09 5.26 6.86 -2.91 -0.02 5.24 16 17 C -0.01 -0.43 5.49 84.87 0.47 0.04 16 18 N -0.91 -54.82 13.67 21.62 0.30 -54.52 16 19 Si 1.02 43.95 29.55 68.60 2.03 45.98 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 C -0.08 -1.63 9.12 22.58 0.21 -1.42 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 26 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 28 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.08 1.30 8.04 -2.39 -0.02 1.28 16 31 H 0.07 1.85 5.86 -2.39 -0.01 1.84 16 32 H 0.11 3.26 8.10 -2.39 -0.02 3.24 16 33 H 0.11 3.27 7.86 -2.39 -0.02 3.25 16 34 H 0.10 3.81 8.10 -2.39 -0.02 3.79 16 35 H 0.10 3.81 8.10 -2.39 -0.02 3.79 16 36 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.14 2.72 6.99 -2.91 -0.02 2.70 16 Total: -1.00 -75.61 323.02 7.59 -68.02 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.08 Total: 16.41 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 3.77 Total: -14.89 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.30 Total: -54.52 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: 0.42 Total: -61.00 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.61 7.59 -68.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058070609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.157 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds