Wall clock time and date at job start Mon Mar 30 2020 01:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86807 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47258 * 239.99948 * 3 2 1 5 5 H 1.48498 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47357 * 119.99403 * 3 2 1 7 7 C 1.39931 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00270 * 162.27091 * 7 2 1 9 9 C 1.41440 * 120.00015 * 342.54160 * 7 2 1 10 10 C 1.40789 * 120.17178 * 154.95056 * 9 7 2 11 11 C 1.37721 * 120.04881 * 179.74170 * 10 9 7 12 12 C 1.38356 * 120.41670 * 0.51947 * 11 10 9 13 13 C 1.39930 * 120.35395 * 359.76004 * 12 11 10 14 14 C 1.47765 * 120.02982 * 179.97438 * 13 12 11 15 15 O 1.21467 * 120.00160 * 180.02562 * 14 13 12 16 16 O 1.34705 * 120.00179 * 0.02562 * 14 13 12 17 17 C 1.45196 * 117.00157 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47334 * 179.97438 * 17 16 14 19 19 H 1.08992 * 110.33220 * 305.69940 * 18 17 16 20 20 C 1.54483 * 110.37301 * 183.44764 * 18 17 16 21 21 C 1.54505 * 104.06275 * 217.19191 * 20 18 17 22 22 C 1.54482 * 104.06434 * 0.02562 * 21 20 18 23 23 O 1.44424 * 110.36989 * 67.95221 * 18 17 16 24 24 C 1.39084 * 119.93542 * 359.97438 * 13 12 11 25 25 H 0.96995 * 119.99959 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.97885 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.79051 * 180.25965 * 11 10 9 28 28 H 1.08009 * 119.82330 * 179.74037 * 12 11 10 29 29 H 1.09004 * 109.47263 * 300.00151 * 17 16 14 30 30 H 1.09001 * 109.47496 * 59.99805 * 17 16 14 31 31 H 1.08995 * 110.51313 * 335.83866 * 20 18 17 32 32 H 1.08999 * 110.50594 * 98.54600 * 20 18 17 33 33 H 1.08998 * 110.51199 * 118.64884 * 21 20 18 34 34 H 1.09004 * 110.51083 * 241.35544 * 21 20 18 35 35 H 1.08996 * 110.36925 * 142.80693 * 22 21 20 36 36 H 1.08999 * 110.37194 * 265.14900 * 22 21 20 37 37 H 1.08002 * 120.20455 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6966 1.2126 7 6 2.0080 -1.2118 0.0005 8 1 3.0495 -1.2342 -0.2843 9 6 1.3497 -2.4084 0.3686 10 6 1.8194 -3.6486 -0.1040 11 6 1.1797 -4.8125 0.2602 12 6 0.0674 -4.7728 1.0820 13 6 -0.4176 -3.5492 1.5569 14 6 -1.6065 -3.5151 2.4338 15 8 -2.0273 -2.4526 2.8453 16 8 -2.2236 -4.6623 2.7768 17 6 -3.3856 -4.5530 3.6405 18 6 -3.9476 -5.9487 3.9184 19 1 -4.1476 -6.4697 2.9823 20 6 -5.2359 -5.8509 4.7653 21 6 -5.1526 -7.0651 5.7171 22 6 -3.8235 -7.7526 5.3331 23 8 -3.0264 -6.7091 4.7302 24 6 0.2204 -2.3652 1.2027 25 1 -0.4850 0.8400 -0.0004 26 1 2.6843 -3.6876 -0.7497 27 1 1.5461 -5.7620 -0.1014 28 1 -0.4294 -5.6912 1.3583 29 1 -3.0966 -4.0834 4.5808 30 1 -4.1469 -3.9462 3.1504 31 1 -5.2499 -4.9207 5.3333 32 1 -6.1177 -5.9241 4.1289 33 1 -5.1254 -6.7353 6.7556 34 1 -5.9934 -7.7388 5.5512 35 1 -3.3284 -8.1442 6.2216 36 1 -4.0037 -8.5522 4.6145 37 1 -0.1500 -1.4183 1.5671 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061454829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:21 Heat of formation + Delta-G solvation = -122.291785 kcal Electronic energy + Delta-G solvation = -20567.398198 eV Core-core repulsion = 17274.069704 eV Total energy + Delta-G solvation = -3293.328495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.96154 -39.21342 -37.32648 -35.67699 -33.73527 -32.36313 -31.11357 -30.10146 -29.47441 -26.00120 -25.26111 -23.10261 -21.97252 -21.18326 -20.95944 -19.71904 -17.80701 -16.93872 -16.45814 -16.14056 -15.94351 -15.51145 -15.03877 -14.84736 -14.54215 -13.94148 -13.49820 -13.25084 -12.78100 -12.71198 -12.54390 -12.03126 -11.82780 -11.66079 -11.59738 -11.47398 -11.17041 -11.09697 -10.87322 -10.74772 -10.51871 -10.22613 -10.17056 -9.89016 -9.71045 -9.44922 -9.22094 -7.72184 -7.53307 -6.81082 -4.42305 2.00874 2.80632 3.07254 3.08948 3.16173 3.18292 3.62204 3.72058 3.91380 4.33730 4.53864 4.59897 4.67625 4.91699 5.01589 5.16373 5.28907 5.42883 5.47655 5.54621 5.56197 5.64337 5.67680 5.76116 5.93115 6.15867 6.44437 6.64504 6.69770 6.95170 6.97272 7.01599 7.18850 7.33165 7.70808 7.77695 7.92663 8.12147 8.45723 8.58701 8.78655 8.80712 10.14279 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031025 B = 0.003728 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.286006 B = 7509.519539 C = 8213.836169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.105 4.105 12 C -0.191 4.191 13 C -0.115 4.115 14 C 0.512 3.488 15 O -0.520 6.520 16 O -0.349 6.349 17 C 0.072 3.928 18 C 0.077 3.923 19 H 0.081 0.919 20 C -0.149 4.149 21 C -0.154 4.154 22 C 0.041 3.959 23 O -0.361 6.361 24 C -0.089 4.089 25 H 0.285 0.715 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -9.856 7.392 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.123 4.123 12 C -0.211 4.211 13 C -0.116 4.116 14 C 0.360 3.640 15 O -0.410 6.410 16 O -0.266 6.266 17 C -0.003 4.003 18 C 0.019 3.981 19 H 0.099 0.901 20 C -0.186 4.186 21 C -0.192 4.192 22 C -0.036 4.036 23 O -0.279 6.279 24 C -0.109 4.109 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.207 -9.340 7.542 15.129 hybrid contribution -0.107 0.760 0.014 0.768 sum -9.314 -8.580 7.556 14.746 Atomic orbital electron populations 1.69772 1.07595 1.29861 1.34031 1.25958 0.94777 1.01562 0.92251 0.86304 0.80079 0.80018 0.79989 1.18959 1.20253 1.18713 1.19531 0.98169 0.90920 1.40418 0.89995 1.17530 0.91158 0.92604 0.89411 1.21195 1.03226 0.92751 1.04893 1.20513 0.96159 0.96911 0.98691 1.20595 1.00059 0.95413 1.05031 1.18835 0.94891 0.95922 1.01963 1.21890 0.83095 0.80821 0.78230 1.90754 1.65358 1.31395 1.53500 1.86630 1.41621 1.35988 1.62393 1.22958 0.87220 0.95523 0.94566 1.23041 0.88314 0.91778 0.94939 0.90114 1.22917 0.97652 0.99738 0.98337 1.22935 0.98566 0.97250 1.00428 1.23433 0.91003 0.91111 0.98044 1.89292 1.31624 1.43562 1.63460 1.21650 0.96504 0.95971 0.96745 0.90401 0.88345 0.88525 0.87785 0.90738 0.90095 0.90130 0.89901 0.90522 0.90404 0.89031 0.92182 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.80 10.95 55.55 0.61 -20.20 16 2 C 0.07 1.85 5.14 -17.35 -0.09 1.76 16 3 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 8 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 9 C 0.10 2.54 5.57 -106.88 -0.60 1.94 16 10 C -0.20 -4.81 9.78 -38.81 -0.38 -5.19 16 11 C -0.10 -2.31 10.01 -39.73 -0.40 -2.71 16 12 C -0.19 -4.36 9.62 -38.90 -0.37 -4.74 16 13 C -0.11 -2.85 5.87 -105.06 -0.62 -3.47 16 14 C 0.51 11.96 7.90 34.63 0.27 12.24 16 15 O -0.52 -13.02 16.12 -19.24 -0.31 -13.33 16 16 O -0.35 -6.99 9.46 -41.72 -0.39 -7.39 16 17 C 0.07 1.13 5.08 37.16 0.19 1.31 16 18 C 0.08 0.97 3.58 -25.95 -0.09 0.88 16 19 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.15 -1.34 6.63 -25.16 -0.17 -1.50 16 21 C -0.15 -1.19 7.09 -25.16 -0.18 -1.37 16 22 C 0.04 0.39 7.63 37.94 0.29 0.68 16 23 O -0.36 -5.15 11.35 -35.31 -0.40 -5.55 16 24 C -0.09 -2.41 8.24 -38.43 -0.32 -2.73 16 25 H 0.28 6.91 8.30 -40.82 -0.34 6.58 16 26 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 27 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 28 H 0.10 2.17 7.59 -52.48 -0.40 1.77 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.14 3.88 5.75 -52.49 -0.30 3.58 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -30.17 318.64 -8.41 -38.58 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.89 Total: 4.72 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -2.80 Total: -15.34 kcal Atomic # 7 Polarization: -20.80 SS G_CDS: 0.61 Total: -20.20 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.11 Total: -26.27 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.17 -8.41 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061454829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.715 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds