Wall clock time and date at job start Mon Mar 30 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47040 * 2 1 4 4 C 1.36802 * 120.00186 * 261.86005 * 3 2 1 5 5 H 1.08004 * 120.00010 * 196.34456 * 4 3 2 6 6 C 1.39066 * 120.00146 * 16.35524 * 4 3 2 7 7 N 1.31353 * 119.99714 * 12.64457 * 6 4 3 8 8 Si 1.86797 * 120.00075 * 192.65598 * 6 4 3 9 9 H 1.48497 * 109.47094 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47400 * 119.99564 * 8 6 4 11 11 H 1.48505 * 109.46626 * 239.99664 * 8 6 4 12 12 C 1.34773 * 119.99744 * 81.86971 * 3 2 1 13 13 O 1.21702 * 120.00000 * 181.69989 * 12 3 2 14 14 C 1.46891 * 120.00357 * 1.69718 * 12 3 2 15 15 C 1.36021 * 125.44561 * 169.94830 * 14 12 3 16 16 C 1.41536 * 107.73901 * 180.02562 * 15 14 12 17 17 C 1.40152 * 133.33274 * 180.26631 * 16 15 14 18 18 C 1.36608 * 119.81065 * 180.19619 * 17 16 15 19 19 F 1.35097 * 119.72141 * 179.77445 * 18 17 16 20 20 C 1.39130 * 120.56085 * 359.50563 * 18 17 16 21 21 C 1.37690 * 120.62747 * 0.24626 * 20 18 17 22 22 C 1.39193 * 119.84547 * 0.02562 * 21 20 18 23 23 N 1.37619 * 133.13726 * 179.97438 * 22 21 20 24 24 H 0.96999 * 125.61606 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46386 * 299.99768 * 1 2 3 27 27 H 1.09001 * 109.47150 * 59.99204 * 1 2 3 28 28 H 1.09001 * 109.46746 * 240.00625 * 2 1 3 29 29 H 1.08999 * 109.47513 * 120.00408 * 2 1 3 30 30 H 0.96998 * 120.00321 * 180.02562 * 7 6 4 31 31 H 1.08005 * 126.12810 * 0.04631 * 15 14 12 32 32 H 1.07999 * 120.09343 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.68742 * 180.27544 * 20 18 17 34 34 H 1.07997 * 120.07626 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4045 1.9702 -1.1728 5 1 3.0017 2.8699 -1.1542 6 6 2.0278 1.4107 -2.3889 7 7 1.1071 0.4746 -2.4240 8 14 2.8314 1.9903 -3.9725 9 1 3.8295 3.0455 -3.6637 10 1 3.5091 0.8451 -4.6317 11 1 1.7940 2.5414 -4.8810 12 6 2.0873 2.0715 1.1555 13 8 2.4636 3.2289 1.1513 14 6 1.7082 1.4271 2.4199 15 6 1.9142 1.9435 3.6613 16 6 1.4077 1.0166 4.6034 17 6 1.3381 1.0088 6.0032 18 6 0.7804 -0.0577 6.6495 19 9 0.7183 -0.0653 7.9990 20 6 0.2707 -1.1336 5.9295 21 6 0.3237 -1.1451 4.5537 22 6 0.8924 -0.0721 3.8733 23 7 1.0864 0.1992 2.5382 24 1 0.8284 -0.3767 1.8014 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.8446 0.0840 -3.2722 31 1 2.3803 2.8912 3.8874 32 1 1.7274 1.8420 6.5694 33 1 -0.1711 -1.9674 6.4547 34 1 -0.0742 -1.9851 4.0037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231359.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:59 Heat of formation + Delta-G solvation = 18.013385 kcal Electronic energy + Delta-G solvation = -21018.371653 eV Core-core repulsion = 17639.959693 eV Total energy + Delta-G solvation = -3378.411960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.65247 -41.37871 -38.62386 -36.20631 -35.55693 -32.44815 -31.71755 -30.15720 -28.80027 -28.53001 -25.55845 -23.41792 -22.54831 -21.80338 -20.91504 -19.56708 -17.65979 -17.34352 -16.99553 -16.50018 -15.45084 -15.39539 -15.00547 -14.55658 -14.22969 -14.11582 -13.74225 -13.48005 -13.27815 -12.92312 -12.66097 -12.36034 -12.30591 -12.03347 -11.60161 -11.37091 -11.11536 -11.02219 -10.78658 -10.49356 -10.46922 -10.22287 -9.71130 -9.23767 -8.83026 -8.04275 -7.89283 -7.51983 -6.57916 -4.09119 0.97030 1.59491 2.53775 3.05472 3.12382 3.19039 3.36378 3.87289 3.90745 4.15503 4.41617 4.58988 4.79634 4.90249 5.03589 5.24342 5.38748 5.49724 5.56606 5.70785 5.88783 6.07421 6.09930 6.16888 6.24827 6.31053 6.32657 6.45156 6.84713 6.94386 6.96216 7.19679 7.25388 7.44958 7.68789 7.86559 8.23178 8.89197 9.08913 9.66231 10.39053 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.042042 B = 0.004437 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.833989 B = 6309.739488 C = 6873.227961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.424 5.424 4 C -0.295 4.295 5 H 0.109 0.891 6 C 0.027 3.973 7 N -0.871 5.871 8 Si 0.935 3.065 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.489 3.511 13 O -0.572 6.572 14 C 0.082 3.918 15 C -0.159 4.159 16 C -0.082 4.082 17 C -0.107 4.107 18 C 0.063 3.937 19 F -0.149 7.149 20 C -0.141 4.141 21 C -0.094 4.094 22 C 0.076 3.924 23 N -0.581 5.581 24 H 0.432 0.568 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.038 0.962 30 H 0.271 0.729 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -6.406 8.755 11.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 N -0.141 5.141 4 C -0.423 4.423 5 H 0.127 0.873 6 C -0.176 4.176 7 N -0.511 5.511 8 Si 0.761 3.239 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.277 3.723 13 O -0.456 6.456 14 C -0.030 4.030 15 C -0.185 4.185 16 C -0.087 4.087 17 C -0.127 4.127 18 C 0.043 3.957 19 F -0.128 7.128 20 C -0.161 4.161 21 C -0.114 4.114 22 C -0.035 4.035 23 N -0.197 5.197 24 H 0.284 0.716 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.241 -6.034 8.385 10.570 hybrid contribution 0.004 -0.266 -0.840 0.881 sum -2.237 -6.300 7.545 10.081 Atomic orbital electron populations 1.22454 0.96212 1.00810 1.03435 1.21932 0.94666 0.84499 1.01564 1.43733 1.53498 1.10669 1.06170 1.19926 1.29708 1.10978 0.81690 0.87294 1.25405 0.95609 0.96715 0.99837 1.69949 1.27203 1.26893 1.27066 0.85712 0.79157 0.78796 0.80257 1.18989 1.20440 1.20517 1.16946 0.86900 0.86347 0.82063 1.90687 1.53242 1.16144 1.85542 1.20917 0.99670 0.85879 0.96555 1.20695 1.07555 1.01038 0.89187 1.17937 1.03045 0.95462 0.92256 1.20218 1.01339 0.98160 0.92958 1.16962 1.05136 0.96999 0.76607 1.91449 1.95076 1.96905 1.29399 1.20657 1.03507 0.98559 0.93413 1.19848 1.01604 0.96947 0.93047 1.18522 1.03017 0.97215 0.84697 1.44081 1.50935 1.18367 1.06342 0.71551 0.93386 0.94906 0.87516 0.86211 0.94469 0.91829 0.83058 0.84984 0.84883 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 8.30 37.16 0.31 -2.90 16 2 C 0.10 1.99 4.80 -4.04 -0.02 1.97 16 3 N -0.42 -10.25 2.64 -116.23 -0.31 -10.56 16 4 C -0.30 -7.63 9.40 -15.03 -0.14 -7.77 16 5 H 0.11 2.97 7.32 -52.48 -0.38 2.59 16 6 C 0.03 0.65 5.11 -17.45 -0.09 0.56 16 7 N -0.87 -20.29 8.19 55.50 0.45 -19.84 16 8 Si 0.93 19.09 29.57 -169.99 -5.03 14.06 16 9 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 C 0.49 11.93 7.52 -12.76 -0.10 11.83 16 13 O -0.57 -15.71 16.50 5.19 0.09 -15.62 16 14 C 0.08 1.67 6.39 -82.31 -0.53 1.15 16 15 C -0.16 -2.98 10.55 -39.12 -0.41 -3.40 16 16 C -0.08 -1.37 6.16 -106.93 -0.66 -2.03 16 17 C -0.11 -1.57 10.03 -39.45 -0.40 -1.97 16 18 C 0.06 0.88 7.24 -39.84 -0.29 0.59 16 19 F -0.15 -2.06 17.25 2.25 0.04 -2.02 16 20 C -0.14 -1.76 9.99 -39.45 -0.39 -2.15 16 21 C -0.09 -1.23 10.07 -39.43 -0.40 -1.63 16 22 C 0.08 1.22 7.25 -83.92 -0.61 0.61 16 23 N -0.58 -10.15 4.18 -7.35 -0.03 -10.18 16 24 H 0.43 7.04 3.36 -40.82 -0.14 6.90 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.60 6.33 -51.93 -0.33 0.27 16 27 H 0.11 2.33 6.27 -51.93 -0.33 2.01 16 28 H 0.12 2.62 5.87 -51.93 -0.30 2.31 16 29 H 0.04 0.68 5.18 -51.93 -0.27 0.42 16 30 H 0.27 5.98 8.31 -40.82 -0.34 5.64 16 31 H 0.15 2.72 8.06 -52.48 -0.42 2.30 16 32 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 285.47 15.07 4.30 4.30 Total: -1.00 -27.61 285.47 -7.20 -34.81 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -3.00 Total: 10.18 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -3.72 Total: -5.14 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.12 Total: -40.57 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.61 -7.20 -34.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231359.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.820 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds