Wall clock time and date at job start Mon Mar 30 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47040 * 2 1 4 4 C 1.36802 * 120.00186 * 261.86005 * 3 2 1 5 5 H 1.08004 * 120.00010 * 196.34456 * 4 3 2 6 6 C 1.39066 * 120.00146 * 16.35524 * 4 3 2 7 7 N 1.31353 * 119.99714 * 12.64457 * 6 4 3 8 8 Si 1.86797 * 120.00075 * 192.65598 * 6 4 3 9 9 H 1.48497 * 109.47094 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47400 * 119.99564 * 8 6 4 11 11 H 1.48505 * 109.46626 * 239.99664 * 8 6 4 12 12 C 1.34773 * 119.99744 * 81.86971 * 3 2 1 13 13 O 1.21702 * 120.00000 * 181.69989 * 12 3 2 14 14 C 1.46891 * 120.00357 * 1.69718 * 12 3 2 15 15 C 1.36021 * 125.44561 * 169.94830 * 14 12 3 16 16 C 1.41536 * 107.73901 * 180.02562 * 15 14 12 17 17 C 1.40152 * 133.33274 * 180.26631 * 16 15 14 18 18 C 1.36608 * 119.81065 * 180.19619 * 17 16 15 19 19 F 1.35097 * 119.72141 * 179.77445 * 18 17 16 20 20 C 1.39130 * 120.56085 * 359.50563 * 18 17 16 21 21 C 1.37690 * 120.62747 * 0.24626 * 20 18 17 22 22 C 1.39193 * 119.84547 * 0.02562 * 21 20 18 23 23 N 1.37619 * 133.13726 * 179.97438 * 22 21 20 24 24 H 0.96999 * 125.61606 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46386 * 299.99768 * 1 2 3 27 27 H 1.09001 * 109.47150 * 59.99204 * 1 2 3 28 28 H 1.09001 * 109.46746 * 240.00625 * 2 1 3 29 29 H 1.08999 * 109.47513 * 120.00408 * 2 1 3 30 30 H 0.96998 * 120.00321 * 180.02562 * 7 6 4 31 31 H 1.08005 * 126.12810 * 0.04631 * 15 14 12 32 32 H 1.07999 * 120.09343 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.68742 * 180.27544 * 20 18 17 34 34 H 1.07997 * 120.07626 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4045 1.9702 -1.1728 5 1 3.0017 2.8699 -1.1542 6 6 2.0278 1.4107 -2.3889 7 7 1.1071 0.4746 -2.4240 8 14 2.8314 1.9903 -3.9725 9 1 3.8295 3.0455 -3.6637 10 1 3.5091 0.8451 -4.6317 11 1 1.7940 2.5414 -4.8810 12 6 2.0873 2.0715 1.1555 13 8 2.4636 3.2289 1.1513 14 6 1.7082 1.4271 2.4199 15 6 1.9142 1.9435 3.6613 16 6 1.4077 1.0166 4.6034 17 6 1.3381 1.0088 6.0032 18 6 0.7804 -0.0577 6.6495 19 9 0.7183 -0.0653 7.9990 20 6 0.2707 -1.1336 5.9295 21 6 0.3237 -1.1451 4.5537 22 6 0.8924 -0.0721 3.8733 23 7 1.0864 0.1992 2.5382 24 1 0.8284 -0.3767 1.8014 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.8446 0.0840 -3.2722 31 1 2.3803 2.8912 3.8874 32 1 1.7274 1.8420 6.5694 33 1 -0.1711 -1.9674 6.4547 34 1 -0.0742 -1.9851 4.0037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231359.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:59 Heat of formation + Delta-G solvation = 3.451535 kcal Electronic energy + Delta-G solvation = -21019.003103 eV Core-core repulsion = 17639.959693 eV Total energy + Delta-G solvation = -3379.043409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.74306 -42.74895 -40.29658 -37.54613 -37.31812 -34.10894 -33.16385 -31.75929 -30.16431 -29.81835 -27.29442 -24.90765 -24.07326 -23.05363 -22.29733 -21.07496 -19.30407 -18.67223 -18.58646 -17.81576 -16.96942 -16.55900 -16.46153 -16.13496 -15.92938 -15.48905 -15.03575 -14.97086 -14.77289 -14.12713 -14.03124 -13.97248 -13.72096 -13.50442 -13.24339 -12.97292 -12.79973 -12.33803 -12.30292 -12.09841 -11.90460 -11.81243 -11.06051 -10.92612 -10.73789 -9.86461 -9.15618 -8.80955 -8.40703 -6.02185 -0.26954 0.43805 1.07794 1.42979 1.43810 1.55262 1.98770 2.23073 2.38516 2.73338 2.82848 3.04719 3.36463 3.66158 3.71952 4.00952 4.04173 4.18137 4.37283 4.40327 4.51937 4.58246 4.71849 4.86889 4.92714 5.02456 5.22277 5.24056 5.25063 5.34554 5.55508 5.64507 5.75845 5.95193 6.04456 6.37844 6.45506 7.01583 7.24843 7.81833 8.54047 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.042042 B = 0.004437 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.833989 B = 6309.739488 C = 6873.227961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.432 5.432 4 C -0.343 4.343 5 H 0.078 0.922 6 C 0.006 3.994 7 N -0.869 5.869 8 Si 0.995 3.005 9 H -0.278 1.278 10 H -0.263 1.263 11 H -0.274 1.274 12 C 0.476 3.524 13 O -0.623 6.623 14 C 0.048 3.952 15 C -0.152 4.152 16 C -0.104 4.104 17 C -0.111 4.111 18 C 0.062 3.938 19 F -0.147 7.147 20 C -0.121 4.121 21 C -0.090 4.090 22 C 0.075 3.925 23 N -0.574 5.574 24 H 0.436 0.564 25 H 0.085 0.915 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.279 0.721 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.171 0.829 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 -9.237 9.899 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.148 5.148 4 C -0.470 4.470 5 H 0.096 0.904 6 C -0.198 4.198 7 N -0.507 5.507 8 Si 0.818 3.182 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.199 1.199 12 C 0.266 3.734 13 O -0.511 6.511 14 C -0.063 4.063 15 C -0.179 4.179 16 C -0.109 4.109 17 C -0.130 4.130 18 C 0.042 3.958 19 F -0.126 7.126 20 C -0.141 4.141 21 C -0.111 4.111 22 C -0.035 4.035 23 N -0.191 5.191 24 H 0.289 0.711 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.188 0.812 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.574 -8.925 9.529 13.536 hybrid contribution 0.341 0.529 -1.002 1.183 sum -3.233 -8.396 8.527 12.396 Atomic orbital electron populations 1.22293 0.94761 1.02726 1.01890 1.22032 0.95772 0.82625 1.01975 1.43920 1.53233 1.11913 1.05705 1.19795 1.32065 1.11708 0.83474 0.90410 1.26039 0.95571 0.96571 1.01586 1.70019 1.26338 1.26229 1.28119 0.84853 0.78120 0.78428 0.76800 1.20281 1.18803 1.19899 1.17499 0.86358 0.86118 0.83394 1.90617 1.55506 1.18316 1.86641 1.20290 1.03074 0.87965 0.95006 1.20833 1.06464 1.01089 0.89529 1.17967 1.04387 0.95532 0.93037 1.20358 1.01344 0.99163 0.92182 1.17135 1.04749 0.97153 0.76806 1.91466 1.94993 1.96884 1.29238 1.21106 1.01205 0.98591 0.93169 1.20254 1.00642 0.96814 0.93350 1.18910 1.02852 0.97961 0.83804 1.43807 1.50795 1.17261 1.07210 0.71149 0.89595 0.94805 0.90601 0.87622 0.92113 0.91035 0.83517 0.83803 0.81174 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 8.30 71.98 0.60 -5.22 16 2 C 0.10 4.05 4.80 86.38 0.41 4.46 16 3 N -0.43 -21.82 2.64 -639.85 -1.69 -23.51 16 4 C -0.34 -18.67 9.40 84.12 0.79 -17.88 16 5 H 0.08 4.60 7.32 -2.91 -0.02 4.58 16 6 C 0.01 0.28 5.11 84.96 0.43 0.71 16 7 N -0.87 -40.35 8.19 21.68 0.18 -40.17 16 8 Si 0.99 39.57 29.57 68.60 2.03 41.60 16 9 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 12 C 0.48 24.57 7.52 86.51 0.65 25.22 16 13 O -0.62 -36.79 16.50 -4.35 -0.07 -36.86 16 14 C 0.05 2.02 6.39 39.90 0.25 2.27 16 15 C -0.15 -5.86 10.55 22.57 0.24 -5.62 16 16 C -0.10 -3.38 6.16 -21.36 -0.13 -3.52 16 17 C -0.11 -3.02 10.03 22.35 0.22 -2.80 16 18 C 0.06 1.49 7.24 22.10 0.16 1.65 16 19 F -0.15 -3.54 17.25 44.97 0.78 -2.76 16 20 C -0.12 -2.39 9.99 22.35 0.22 -2.17 16 21 C -0.09 -1.95 10.07 22.37 0.23 -1.72 16 22 C 0.08 2.24 7.25 39.10 0.28 2.52 16 23 N -0.57 -19.45 4.18 -177.15 -0.74 -20.19 16 24 H 0.44 13.46 3.36 -92.71 -0.31 13.15 16 25 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.03 1.22 6.33 -2.39 -0.02 1.20 16 27 H 0.08 3.30 6.27 -2.39 -0.01 3.29 16 28 H 0.11 4.61 5.87 -2.39 -0.01 4.60 16 29 H 0.06 2.18 5.18 -2.39 -0.01 2.17 16 30 H 0.28 12.00 8.31 -92.71 -0.77 11.23 16 31 H 0.15 5.58 8.06 -2.91 -0.02 5.56 16 32 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -63.33 285.47 5.69 -57.63 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.85 Total: 26.35 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.37 Total: -2.08 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.25 Total: -83.87 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.07 Total: -36.86 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -63.33 5.69 -57.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231359.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.084 kcal (2) G-P(sol) polarization free energy of solvation -63.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds