Wall clock time and date at job start Mon Mar 30 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 120.00404 * 2 1 4 4 H 1.08002 * 119.99571 * 322.03575 * 3 2 1 5 5 C 1.38813 * 120.00093 * 142.03210 * 3 2 1 6 6 N 1.31614 * 119.99634 * 157.04612 * 5 3 2 7 7 Si 1.86799 * 120.00196 * 337.04286 * 5 3 2 8 8 H 1.48499 * 109.46754 * 95.68470 * 7 5 3 9 9 H 1.48492 * 109.47193 * 215.68050 * 7 5 3 10 10 H 1.48497 * 109.46959 * 335.68615 * 7 5 3 11 11 C 1.46500 * 120.00038 * 179.97438 * 2 1 3 12 12 C 1.50694 * 109.47292 * 90.00120 * 11 2 1 13 13 C 1.34549 * 126.07593 * 94.71486 * 12 11 2 14 14 O 1.34777 * 107.26862 * 180.26811 * 13 12 11 15 15 C 1.34427 * 107.69775 * 359.97438 * 14 13 12 16 16 C 1.47824 * 125.72958 * 179.97438 * 15 14 13 17 17 C 1.39596 * 120.13467 * 179.71916 * 16 15 14 18 18 C 1.37945 * 119.90642 * 179.74797 * 17 16 15 19 19 C 1.38341 * 120.17248 * 0.53487 * 18 17 16 20 20 C 1.38550 * 120.26325 * 359.74558 * 19 18 17 21 21 F 1.35110 * 119.95012 * 180.02562 * 20 19 18 22 22 C 1.38206 * 120.09674 * 359.97438 * 20 19 18 23 23 N 1.31218 * 108.54314 * 0.02562 * 15 14 13 24 24 H 1.09002 * 109.47825 * 265.66797 * 1 2 3 25 25 H 1.09001 * 109.46943 * 25.66492 * 1 2 3 26 26 H 1.08997 * 109.47533 * 145.66080 * 1 2 3 27 27 H 0.97002 * 119.99906 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.47307 * 330.00326 * 11 2 1 29 29 H 1.09000 * 109.47583 * 210.00861 * 11 2 1 30 30 H 1.07991 * 126.36573 * 0.26452 * 13 12 11 31 31 H 1.08003 * 120.04428 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.91310 * 180.28378 * 18 17 16 33 33 H 1.07996 * 119.86724 * 179.72367 * 19 18 17 34 34 H 1.08001 * 120.09000 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0222 -0.5754 5 6 3.3175 1.3130 0.7396 6 7 4.2041 2.2306 0.4168 7 14 3.6305 0.1820 2.1929 8 1 4.4684 -0.9639 1.7568 9 1 4.3368 0.9331 3.2616 10 1 2.3353 -0.3225 2.7154 11 6 2.1974 -1.2687 0.0006 12 6 2.4486 -1.7044 -1.4200 13 6 3.5614 -1.4645 -2.1372 14 8 3.3799 -2.0156 -3.3537 15 6 2.1622 -2.5850 -3.3668 16 6 1.5573 -3.3030 -4.5086 17 6 0.2811 -3.8567 -4.3916 18 6 -0.2810 -4.5212 -5.4618 19 6 0.4210 -4.6500 -6.6468 20 6 1.6904 -4.1083 -6.7688 21 9 2.3702 -4.2374 -7.9293 22 6 2.2618 -3.4353 -5.7055 23 7 1.6004 -2.3956 -2.1962 24 1 -0.3635 -0.0776 1.0247 25 1 -0.3633 0.9263 -0.4451 26 1 -0.3634 -0.8485 -0.5797 27 1 5.0204 2.3192 0.9334 28 1 1.6083 -2.0282 0.5147 29 1 3.1498 -1.1383 0.5145 30 1 4.4373 -0.9298 -1.8008 31 1 -0.2671 -3.7609 -3.4660 32 1 -1.2702 -4.9456 -5.3729 33 1 -0.0220 -5.1751 -7.4800 34 1 3.2512 -3.0128 -5.8009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:40 Heat of formation + Delta-G solvation = 33.892102 kcal Electronic energy + Delta-G solvation = -20390.217110 eV Core-core repulsion = 17012.493703 eV Total energy + Delta-G solvation = -3377.723407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.08719 -42.82626 -39.03797 -36.20257 -34.15170 -32.41911 -31.63242 -30.80696 -29.29617 -26.67155 -25.82149 -23.99402 -23.00868 -21.59576 -21.02421 -20.43549 -18.10748 -17.02148 -16.38871 -16.33953 -16.25500 -16.10614 -15.74822 -15.33279 -14.66526 -14.11912 -13.98323 -13.83205 -13.38822 -13.13842 -12.70020 -12.67458 -12.47211 -12.01985 -11.79814 -11.50203 -11.26435 -10.97075 -10.73946 -10.53089 -10.26704 -10.05473 -9.77335 -9.53833 -9.03897 -8.63656 -7.98384 -6.94251 -6.10477 -3.51491 0.51797 0.95582 2.08168 2.95441 3.03199 3.21333 3.40262 3.46175 3.58028 3.83349 4.26316 4.41985 4.61101 4.70669 4.93891 5.06257 5.08260 5.28191 5.32269 5.46316 5.57825 5.77676 5.80357 5.98201 6.04794 6.18578 6.28596 6.36345 6.38898 6.42023 6.58903 6.65843 6.72574 6.78838 7.94252 8.12262 8.30498 8.87355 9.59501 10.02252 11.04737 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.032128 B = 0.004217 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.291411 B = 6637.949282 C = 7048.280745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.600 5.600 3 C -0.271 4.271 4 H 0.079 0.921 5 C 0.037 3.963 6 N -0.895 5.895 7 Si 0.870 3.130 8 H -0.283 1.283 9 H -0.297 1.297 10 H -0.266 1.266 11 C 0.210 3.790 12 C -0.009 4.009 13 C -0.046 4.046 14 O -0.202 6.202 15 C 0.188 3.812 16 C 0.035 3.965 17 C -0.087 4.087 18 C -0.090 4.090 19 C -0.146 4.146 20 C 0.098 3.902 21 F -0.138 7.138 22 C -0.133 4.133 23 N -0.447 5.447 24 H 0.011 0.989 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.265 0.735 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.219 0.781 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 -14.295 -10.893 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.323 5.323 3 C -0.399 4.399 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.535 5.535 7 Si 0.699 3.301 8 H -0.211 1.211 9 H -0.225 1.225 10 H -0.190 1.190 11 C 0.083 3.917 12 C -0.133 4.133 13 C -0.118 4.118 14 O -0.088 6.088 15 C -0.014 4.014 16 C 0.034 3.966 17 C -0.106 4.106 18 C -0.108 4.108 19 C -0.166 4.166 20 C 0.079 3.921 21 F -0.117 7.117 22 C -0.153 4.153 23 N -0.178 5.178 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.235 0.765 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.138 -14.370 -10.740 18.961 hybrid contribution 1.310 -0.053 0.419 1.377 sum -4.828 -14.423 -10.321 18.381 Atomic orbital electron populations 1.21101 0.83790 0.99478 0.97600 1.44039 1.01204 1.01402 1.85634 1.18844 1.06344 0.90461 1.24274 0.90392 1.25478 0.96712 0.96570 0.97643 1.69890 1.08378 1.36015 1.39259 0.87032 0.78318 0.80045 0.84697 1.21133 1.22477 1.19021 1.19704 0.97410 0.88311 0.86291 1.23195 0.90081 0.98538 1.01513 1.25125 1.03291 1.01813 0.81531 1.84427 1.33995 1.55424 1.34993 1.23404 0.82555 1.00806 0.94665 1.17010 0.93842 0.97200 0.88589 1.21292 0.93378 0.95882 1.00095 1.20951 1.00105 0.98149 0.91641 1.21279 0.93535 1.01935 0.99817 1.17421 0.91524 1.00874 0.82265 1.91516 1.79630 1.94259 1.46252 1.21188 1.01654 1.00708 0.91796 1.70468 1.30949 1.15538 1.00880 0.97129 0.93770 0.94683 0.92534 0.92185 0.91145 0.76489 0.83627 0.84155 0.84425 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.60 10.70 59.84 0.64 3.25 16 2 N -0.60 -14.46 2.45 -182.51 -0.45 -14.91 16 3 C -0.27 -7.45 9.88 -15.06 -0.15 -7.60 16 4 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 5 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 6 N -0.89 -26.18 13.97 55.49 0.78 -25.41 16 7 Si 0.87 21.10 25.10 -169.99 -4.27 16.83 16 8 H -0.28 -6.52 6.68 56.52 0.38 -6.14 16 9 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 C 0.21 4.61 5.07 -5.20 -0.03 4.58 16 12 C -0.01 -0.18 6.68 -82.88 -0.55 -0.73 16 13 C -0.05 -0.91 12.08 29.43 0.36 -0.55 16 14 O -0.20 -3.72 10.52 4.06 0.04 -3.67 16 15 C 0.19 3.32 7.90 -13.89 -0.11 3.21 16 16 C 0.03 0.49 5.87 -104.99 -0.62 -0.13 16 17 C -0.09 -1.02 9.69 -39.18 -0.38 -1.40 16 18 C -0.09 -0.80 10.03 -39.65 -0.40 -1.20 16 19 C -0.15 -1.33 10.02 -39.43 -0.40 -1.73 16 20 C 0.10 1.10 7.29 -39.48 -0.29 0.82 16 21 F -0.14 -1.60 17.26 2.25 0.04 -1.56 16 22 C -0.13 -1.68 9.69 -39.11 -0.38 -2.06 16 23 N -0.45 -8.69 10.91 -7.97 -0.09 -8.78 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 26 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.07 1.61 3.37 -51.93 -0.18 1.43 16 30 H 0.22 3.97 8.06 -52.49 -0.42 3.54 16 31 H 0.15 1.70 7.83 -52.48 -0.41 1.29 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.14 1.75 7.90 -52.49 -0.41 1.33 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -30.63 303.27 -5.29 -35.92 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.53 Total: -0.37 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.39 Total: -2.62 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.24 Total: -49.09 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.67 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.27 Total: 16.83 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.63 -5.29 -35.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.816 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds