Wall clock time and date at job start Mon Mar 30 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 120.00404 * 2 1 4 4 H 1.08002 * 119.99571 * 322.03575 * 3 2 1 5 5 C 1.38813 * 120.00093 * 142.03210 * 3 2 1 6 6 N 1.31614 * 119.99634 * 157.04612 * 5 3 2 7 7 Si 1.86799 * 120.00196 * 337.04286 * 5 3 2 8 8 H 1.48499 * 109.46754 * 95.68470 * 7 5 3 9 9 H 1.48492 * 109.47193 * 215.68050 * 7 5 3 10 10 H 1.48497 * 109.46959 * 335.68615 * 7 5 3 11 11 C 1.46500 * 120.00038 * 179.97438 * 2 1 3 12 12 C 1.50694 * 109.47292 * 90.00120 * 11 2 1 13 13 C 1.34549 * 126.07593 * 94.71486 * 12 11 2 14 14 O 1.34777 * 107.26862 * 180.26811 * 13 12 11 15 15 C 1.34427 * 107.69775 * 359.97438 * 14 13 12 16 16 C 1.47824 * 125.72958 * 179.97438 * 15 14 13 17 17 C 1.39596 * 120.13467 * 179.71916 * 16 15 14 18 18 C 1.37945 * 119.90642 * 179.74797 * 17 16 15 19 19 C 1.38341 * 120.17248 * 0.53487 * 18 17 16 20 20 C 1.38550 * 120.26325 * 359.74558 * 19 18 17 21 21 F 1.35110 * 119.95012 * 180.02562 * 20 19 18 22 22 C 1.38206 * 120.09674 * 359.97438 * 20 19 18 23 23 N 1.31218 * 108.54314 * 0.02562 * 15 14 13 24 24 H 1.09002 * 109.47825 * 265.66797 * 1 2 3 25 25 H 1.09001 * 109.46943 * 25.66492 * 1 2 3 26 26 H 1.08997 * 109.47533 * 145.66080 * 1 2 3 27 27 H 0.97002 * 119.99906 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.47307 * 330.00326 * 11 2 1 29 29 H 1.09000 * 109.47583 * 210.00861 * 11 2 1 30 30 H 1.07991 * 126.36573 * 0.26452 * 13 12 11 31 31 H 1.08003 * 120.04428 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.91310 * 180.28378 * 18 17 16 33 33 H 1.07996 * 119.86724 * 179.72367 * 19 18 17 34 34 H 1.08001 * 120.09000 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0222 -0.5754 5 6 3.3175 1.3130 0.7396 6 7 4.2041 2.2306 0.4168 7 14 3.6305 0.1820 2.1929 8 1 4.4684 -0.9639 1.7568 9 1 4.3368 0.9331 3.2616 10 1 2.3353 -0.3225 2.7154 11 6 2.1974 -1.2687 0.0006 12 6 2.4486 -1.7044 -1.4200 13 6 3.5614 -1.4645 -2.1372 14 8 3.3799 -2.0156 -3.3537 15 6 2.1622 -2.5850 -3.3668 16 6 1.5573 -3.3030 -4.5086 17 6 0.2811 -3.8567 -4.3916 18 6 -0.2810 -4.5212 -5.4618 19 6 0.4210 -4.6500 -6.6468 20 6 1.6904 -4.1083 -6.7688 21 9 2.3702 -4.2374 -7.9293 22 6 2.2618 -3.4353 -5.7055 23 7 1.6004 -2.3956 -2.1962 24 1 -0.3635 -0.0776 1.0247 25 1 -0.3633 0.9263 -0.4451 26 1 -0.3634 -0.8485 -0.5797 27 1 5.0204 2.3192 0.9334 28 1 1.6083 -2.0282 0.5147 29 1 3.1498 -1.1383 0.5145 30 1 4.4373 -0.9298 -1.8008 31 1 -0.2671 -3.7609 -3.4660 32 1 -1.2702 -4.9456 -5.3729 33 1 -0.0220 -5.1751 -7.4800 34 1 3.2512 -3.0128 -5.8009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:40 Heat of formation + Delta-G solvation = 13.824347 kcal Electronic energy + Delta-G solvation = -20391.087313 eV Core-core repulsion = 17012.493703 eV Total energy + Delta-G solvation = -3378.593610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.96653 -44.28405 -39.93045 -38.00005 -35.70020 -33.85327 -33.35262 -31.74315 -30.63531 -28.29803 -27.72300 -25.10705 -24.04920 -23.31956 -22.25962 -21.97609 -19.38916 -18.71348 -17.73577 -17.58186 -17.32089 -17.19636 -17.14847 -16.64902 -15.91788 -15.82067 -15.48699 -14.96682 -14.77537 -14.56535 -14.36288 -14.15926 -13.61447 -13.52191 -13.02177 -12.88187 -12.65462 -12.56776 -12.33828 -12.17992 -12.07105 -11.73170 -11.56244 -10.71693 -10.69237 -9.93775 -9.30432 -8.88710 -8.23989 -5.64755 -0.50558 0.09727 0.75318 1.29295 1.43139 1.54661 1.61538 1.65820 2.38889 2.58265 2.67766 3.03319 3.28409 3.47614 3.71044 3.85041 3.90538 4.03080 4.05703 4.25132 4.45584 4.54629 4.60061 4.71285 4.78841 4.87063 4.94088 5.01047 5.03051 5.07495 5.17357 5.30654 5.32979 5.76031 5.88243 6.12174 6.65041 6.89379 7.53581 7.98584 8.95221 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.032128 B = 0.004217 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.291411 B = 6637.949282 C = 7048.280745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.613 5.613 3 C -0.270 4.270 4 H 0.036 0.964 5 C -0.007 4.007 6 N -0.939 5.939 7 Si 0.933 3.067 8 H -0.263 1.263 9 H -0.303 1.303 10 H -0.258 1.258 11 C 0.211 3.789 12 C -0.025 4.025 13 C -0.062 4.062 14 O -0.205 6.205 15 C 0.204 3.796 16 C 0.000 4.000 17 C -0.086 4.086 18 C -0.076 4.076 19 C -0.124 4.124 20 C 0.088 3.912 21 F -0.142 7.142 22 C -0.139 4.139 23 N -0.466 5.466 24 H 0.026 0.974 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.267 0.733 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.222 0.778 31 H 0.145 0.855 32 H 0.182 0.818 33 H 0.173 0.827 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 -17.128 -11.698 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.336 5.336 3 C -0.399 4.399 4 H 0.053 0.947 5 C -0.205 4.205 6 N -0.582 5.582 7 Si 0.760 3.240 8 H -0.190 1.190 9 H -0.231 1.231 10 H -0.182 1.182 11 C 0.085 3.915 12 C -0.149 4.149 13 C -0.133 4.133 14 O -0.092 6.092 15 C 0.000 4.000 16 C -0.001 4.001 17 C -0.105 4.105 18 C -0.093 4.093 19 C -0.143 4.143 20 C 0.069 3.931 21 F -0.120 7.120 22 C -0.159 4.159 23 N -0.196 5.196 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.239 0.761 31 H 0.163 0.837 32 H 0.199 0.801 33 H 0.191 0.809 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.861 -17.231 -11.540 22.179 hybrid contribution 1.726 0.748 0.431 1.930 sum -6.135 -16.484 -11.109 20.803 Atomic orbital electron populations 1.21157 0.82046 0.99880 0.98696 1.44136 1.02413 1.00989 1.86100 1.18627 1.06668 0.90996 1.23657 0.94657 1.26003 0.96332 0.98440 0.99700 1.70002 1.09152 1.38538 1.40523 0.86008 0.78681 0.78659 0.80631 1.18990 1.23064 1.18157 1.19661 0.97027 0.87692 0.87156 1.23021 0.90903 0.99602 1.01349 1.25186 1.03580 1.02494 0.82013 1.84434 1.34664 1.55625 1.34478 1.24232 0.81717 0.98934 0.95082 1.17140 0.95350 0.99529 0.88094 1.21464 0.92314 0.95610 1.01148 1.21371 1.01355 0.96442 0.90179 1.21724 0.92051 0.99795 1.00766 1.17569 0.92469 1.01333 0.81762 1.91512 1.79927 1.94308 1.46269 1.21169 1.01561 1.01121 0.92044 1.70424 1.31008 1.16649 1.01501 0.95601 0.94405 0.93068 0.92410 0.90162 0.92104 0.76146 0.83744 0.80093 0.80940 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.15 10.70 127.77 1.37 6.52 16 2 N -0.61 -29.47 2.45 -731.33 -1.79 -31.26 16 3 C -0.27 -15.26 9.88 84.03 0.83 -14.43 16 4 H 0.04 2.26 8.06 -2.91 -0.02 2.23 16 5 C -0.01 -0.39 5.29 84.86 0.45 0.05 16 6 N -0.94 -56.52 13.97 21.65 0.30 -56.21 16 7 Si 0.93 43.62 25.10 68.60 1.72 45.35 16 8 H -0.26 -11.38 6.68 99.48 0.66 -10.72 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 11 C 0.21 9.09 5.07 85.63 0.43 9.53 16 12 C -0.03 -1.06 6.68 41.36 0.28 -0.78 16 13 C -0.06 -2.46 12.08 66.97 0.81 -1.65 16 14 O -0.21 -7.67 10.52 -8.39 -0.09 -7.76 16 15 C 0.20 7.16 7.90 87.32 0.69 7.85 16 16 C 0.00 0.01 5.87 -20.10 -0.12 -0.11 16 17 C -0.09 -1.80 9.69 22.53 0.22 -1.58 16 18 C -0.08 -1.01 10.03 22.22 0.22 -0.79 16 19 C -0.12 -1.72 10.02 22.37 0.22 -1.49 16 20 C 0.09 1.76 7.29 22.34 0.16 1.92 16 21 F -0.14 -3.00 17.26 44.97 0.78 -2.22 16 22 C -0.14 -3.37 9.69 22.57 0.22 -3.15 16 23 N -0.47 -17.89 10.91 -293.20 -3.20 -21.09 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 26 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 27 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.08 3.09 8.07 -2.38 -0.02 3.07 16 29 H 0.06 2.71 3.37 -2.39 -0.01 2.71 16 30 H 0.22 8.37 8.06 -2.92 -0.02 8.35 16 31 H 0.14 3.05 7.83 -2.91 -0.02 3.02 16 32 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.14 3.36 7.90 -2.91 -0.02 3.34 16 Total: -1.00 -67.55 303.27 4.59 -62.96 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.08 Total: 8.35 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.78 Total: 1.89 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -4.69 Total: -108.57 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.09 Total: -7.76 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.72 Total: 45.35 kcal Total: -67.55 4.59 -62.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.783 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds