Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99853 * 2 1 4 4 H 1.08009 * 119.99630 * 202.34272 * 3 2 1 5 5 C 1.38805 * 120.00337 * 22.34691 * 3 2 1 6 6 N 1.31622 * 119.99967 * 11.33397 * 5 3 2 7 7 Si 1.86800 * 120.00143 * 191.33639 * 5 3 2 8 8 H 1.48502 * 109.47262 * 89.99801 * 7 5 3 9 9 H 1.48500 * 109.47299 * 209.99766 * 7 5 3 10 10 H 1.48500 * 109.47133 * 329.99777 * 7 5 3 11 11 C 1.46502 * 119.99748 * 179.97438 * 2 1 3 12 12 C 1.50703 * 109.47121 * 270.00043 * 11 2 1 13 13 N 1.30345 * 125.47930 * 89.96508 * 12 11 2 14 14 C 1.34155 * 108.89986 * 179.78828 * 13 12 11 15 15 C 1.35764 * 107.51662 * 0.39093 * 14 13 12 16 16 C 1.47832 * 126.58572 * 179.87774 * 15 14 13 17 17 C 1.39568 * 120.12269 * 179.71285 * 16 15 14 18 18 C 1.37927 * 119.88148 * 180.02562 * 17 16 15 19 19 C 1.38578 * 120.11995 * 0.02562 * 18 17 16 20 20 F 1.35100 * 119.88030 * 179.97438 * 19 18 17 21 21 C 1.38578 * 120.23750 * 0.25640 * 19 18 17 22 22 C 1.37924 * 120.11867 * 359.44372 * 21 19 18 23 23 O 1.34021 * 125.48297 * 269.99983 * 12 11 2 24 24 H 1.08996 * 109.47178 * 274.22377 * 1 2 3 25 25 H 1.08999 * 109.46414 * 34.21906 * 1 2 3 26 26 H 1.09002 * 109.46944 * 154.21962 * 1 2 3 27 27 H 0.96998 * 119.99976 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.46529 * 150.00360 * 11 2 1 29 29 H 1.09001 * 109.47145 * 30.00362 * 11 2 1 30 30 H 1.08007 * 126.24332 * 180.25390 * 14 13 12 31 31 H 1.08002 * 120.06107 * 359.97438 * 17 16 15 32 32 H 1.08009 * 119.94352 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.94029 * 179.70295 * 21 19 18 34 34 H 1.07998 * 120.06207 * 180.28224 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2210 -0.3556 5 6 1.5339 2.3429 0.4570 6 7 0.3841 2.2691 1.0934 7 14 2.3369 4.0047 0.1689 8 1 1.8683 4.5633 -1.1248 9 1 1.9683 4.9302 1.2702 10 1 3.8125 3.8418 0.1323 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4216 13 7 1.6552 -2.4514 2.1354 14 6 2.2033 -2.6347 3.3461 15 6 3.3802 -1.9583 3.3684 16 6 4.3267 -1.8740 4.5010 17 6 5.5076 -1.1411 4.3738 18 6 6.3873 -1.0662 5.4334 19 6 6.1007 -1.7174 6.6226 20 9 6.9661 -1.6412 7.6573 21 6 4.9324 -2.4513 6.7523 22 6 4.0427 -2.5278 5.7011 23 8 3.5234 -1.3818 2.1549 24 1 -0.3633 0.0757 1.0248 25 1 -0.3632 0.8498 -0.5779 26 1 -0.3633 -0.9254 -0.4470 27 1 -0.0464 3.0776 1.4125 28 1 3.1499 -1.1386 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 1.7836 -3.2129 4.1561 31 1 5.7326 -0.6342 3.4471 32 1 7.3017 -0.4996 5.3360 33 1 4.7161 -2.9609 7.6797 34 1 3.1303 -3.0962 5.8048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972539.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = 26.648030 kcal Electronic energy + Delta-G solvation = -20330.860829 eV Core-core repulsion = 16952.823296 eV Total energy + Delta-G solvation = -3378.037534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.00215 -42.57760 -38.91441 -35.80916 -34.09235 -32.34721 -31.38029 -31.27961 -28.68994 -26.28358 -25.79962 -23.51263 -22.94123 -21.72599 -21.12274 -20.20702 -17.93655 -17.06158 -16.88021 -16.22154 -16.00115 -15.70679 -15.66953 -14.87092 -14.25041 -13.83401 -13.72262 -13.60660 -13.43217 -13.11930 -12.99677 -12.53711 -12.21782 -11.83510 -11.35672 -11.12362 -11.02123 -10.81537 -10.70017 -10.50127 -10.15341 -10.07634 -9.93171 -9.46423 -9.28079 -8.73624 -7.66615 -7.06927 -5.92203 -3.40205 0.64833 1.10762 2.22376 3.13960 3.25626 3.31635 3.36317 3.37705 3.67504 4.12143 4.36098 4.58225 4.65261 4.71986 4.94428 5.10355 5.18677 5.32052 5.43160 5.48547 5.71151 5.80277 5.95935 5.98450 6.03574 6.22401 6.28179 6.37093 6.64492 6.69352 6.72663 6.90485 7.26848 7.62292 7.69149 8.16825 8.40609 9.01221 9.60169 10.07702 11.11045 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.004745 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.726661 B = 5899.462975 C = 6882.220742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.573 5.573 3 C -0.270 4.270 4 H 0.077 0.923 5 C 0.010 3.990 6 N -0.896 5.896 7 Si 0.912 3.088 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.276 1.276 11 C 0.224 3.776 12 C 0.218 3.782 13 N -0.505 5.505 14 C -0.008 4.008 15 C -0.053 4.053 16 C 0.003 3.997 17 C -0.078 4.078 18 C -0.146 4.146 19 C 0.089 3.911 20 F -0.142 7.142 21 C -0.147 4.147 22 C -0.079 4.079 23 O -0.191 6.191 24 H 0.032 0.968 25 H 0.052 0.948 26 H 0.007 0.993 27 H 0.257 0.743 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.175 0.825 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.171 -9.290 7.034 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.292 5.292 3 C -0.399 4.399 4 H 0.095 0.905 5 C -0.190 4.190 6 N -0.539 5.539 7 Si 0.741 3.259 8 H -0.210 1.210 9 H -0.215 1.215 10 H -0.202 1.202 11 C 0.093 3.907 12 C 0.009 3.991 13 N -0.234 5.234 14 C -0.149 4.149 15 C -0.107 4.107 16 C 0.002 3.998 17 C -0.096 4.096 18 C -0.165 4.165 19 C 0.070 3.930 20 F -0.121 7.121 21 C -0.165 4.165 22 C -0.098 4.098 23 O -0.078 6.078 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.192 0.808 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.505 -9.299 6.843 13.771 hybrid contribution 1.021 1.333 0.835 1.875 sum 8.526 -7.966 7.678 13.968 Atomic orbital electron populations 1.20943 0.81197 0.96375 0.99953 1.44421 1.02721 1.00059 1.82040 1.19361 0.98820 0.84669 1.37094 0.90517 1.25180 0.97441 0.99112 0.97264 1.70098 1.17445 1.27741 1.38580 0.86150 0.79015 0.83226 0.77545 1.20989 1.21529 1.20152 1.20026 0.98113 0.89684 0.82913 1.29613 0.79733 0.90467 0.99262 1.70370 1.30342 1.18964 1.03692 1.23200 0.92884 1.02246 0.96547 1.21081 0.99267 1.03550 0.86789 1.17705 0.92903 0.98664 0.90548 1.21197 0.92382 0.97030 0.99021 1.21067 1.01569 1.01733 0.92127 1.17781 0.89419 1.00655 0.85153 1.91488 1.68660 1.94933 1.56975 1.20967 0.93687 1.01398 1.00488 1.20873 0.99398 0.98656 0.90829 1.84530 1.42953 1.59063 1.21247 0.94910 0.92908 0.97444 0.93269 0.90504 0.89288 0.80810 0.84241 0.84407 0.84310 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 9.01 59.85 0.54 4.42 16 2 N -0.57 -14.09 2.91 -182.49 -0.53 -14.62 16 3 C -0.27 -7.19 9.67 -15.06 -0.15 -7.33 16 4 H 0.08 1.97 7.85 -52.48 -0.41 1.55 16 5 C 0.01 0.28 5.13 -17.43 -0.09 0.19 16 6 N -0.90 -25.72 10.58 55.49 0.59 -25.13 16 7 Si 0.91 21.31 29.57 -169.99 -5.03 16.28 16 8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 C 0.22 4.54 6.33 -5.19 -0.03 4.50 16 12 C 0.22 4.63 7.91 -12.91 -0.10 4.53 16 13 N -0.50 -10.54 11.27 -10.81 -0.12 -10.66 16 14 C -0.01 -0.14 11.29 -17.42 -0.20 -0.33 16 15 C -0.05 -0.96 7.07 -36.54 -0.26 -1.22 16 16 C 0.00 0.04 5.87 -104.97 -0.62 -0.58 16 17 C -0.08 -1.09 9.73 -39.20 -0.38 -1.47 16 18 C -0.15 -1.77 10.01 -39.57 -0.40 -2.16 16 19 C 0.09 1.07 7.30 -39.33 -0.29 0.78 16 20 F -0.14 -1.72 17.26 2.25 0.04 -1.68 16 21 C -0.15 -1.60 10.01 -39.57 -0.40 -2.00 16 22 C -0.08 -0.95 9.57 -39.19 -0.38 -1.33 16 23 O -0.19 -4.00 10.59 4.19 0.04 -3.95 16 24 H 0.03 0.89 7.42 -51.93 -0.39 0.50 16 25 H 0.05 1.35 7.19 -51.93 -0.37 0.98 16 26 H 0.01 0.15 7.84 -51.93 -0.41 -0.26 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 29 H 0.09 1.58 7.86 -51.93 -0.41 1.17 16 30 H 0.17 2.40 7.30 -52.48 -0.38 2.02 16 31 H 0.14 1.95 7.94 -52.49 -0.42 1.53 16 32 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.14 1.34 7.04 -52.49 -0.37 0.97 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -31.00 305.31 -6.70 -37.70 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.55 Total: -0.56 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.74 Total: -1.98 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.07 Total: -50.41 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.00 -6.70 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972539.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.351 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds