Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99853 * 2 1 4 4 H 1.08009 * 119.99630 * 202.34272 * 3 2 1 5 5 C 1.38805 * 120.00337 * 22.34691 * 3 2 1 6 6 N 1.31622 * 119.99967 * 11.33397 * 5 3 2 7 7 Si 1.86800 * 120.00143 * 191.33639 * 5 3 2 8 8 H 1.48502 * 109.47262 * 89.99801 * 7 5 3 9 9 H 1.48500 * 109.47299 * 209.99766 * 7 5 3 10 10 H 1.48500 * 109.47133 * 329.99777 * 7 5 3 11 11 C 1.46502 * 119.99748 * 179.97438 * 2 1 3 12 12 C 1.50703 * 109.47121 * 270.00043 * 11 2 1 13 13 N 1.30345 * 125.47930 * 89.96508 * 12 11 2 14 14 C 1.34155 * 108.89986 * 179.78828 * 13 12 11 15 15 C 1.35764 * 107.51662 * 0.39093 * 14 13 12 16 16 C 1.47832 * 126.58572 * 179.87774 * 15 14 13 17 17 C 1.39568 * 120.12269 * 179.71285 * 16 15 14 18 18 C 1.37927 * 119.88148 * 180.02562 * 17 16 15 19 19 C 1.38578 * 120.11995 * 0.02562 * 18 17 16 20 20 F 1.35100 * 119.88030 * 179.97438 * 19 18 17 21 21 C 1.38578 * 120.23750 * 0.25640 * 19 18 17 22 22 C 1.37924 * 120.11867 * 359.44372 * 21 19 18 23 23 O 1.34021 * 125.48297 * 269.99983 * 12 11 2 24 24 H 1.08996 * 109.47178 * 274.22377 * 1 2 3 25 25 H 1.08999 * 109.46414 * 34.21906 * 1 2 3 26 26 H 1.09002 * 109.46944 * 154.21962 * 1 2 3 27 27 H 0.96998 * 119.99976 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.46529 * 150.00360 * 11 2 1 29 29 H 1.09001 * 109.47145 * 30.00362 * 11 2 1 30 30 H 1.08007 * 126.24332 * 180.25390 * 14 13 12 31 31 H 1.08002 * 120.06107 * 359.97438 * 17 16 15 32 32 H 1.08009 * 119.94352 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.94029 * 179.70295 * 21 19 18 34 34 H 1.07998 * 120.06207 * 180.28224 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2210 -0.3556 5 6 1.5339 2.3429 0.4570 6 7 0.3841 2.2691 1.0934 7 14 2.3369 4.0047 0.1689 8 1 1.8683 4.5633 -1.1248 9 1 1.9683 4.9302 1.2702 10 1 3.8125 3.8418 0.1323 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7032 1.4216 13 7 1.6552 -2.4514 2.1354 14 6 2.2033 -2.6347 3.3461 15 6 3.3802 -1.9583 3.3684 16 6 4.3267 -1.8740 4.5010 17 6 5.5076 -1.1411 4.3738 18 6 6.3873 -1.0662 5.4334 19 6 6.1007 -1.7174 6.6226 20 9 6.9661 -1.6412 7.6573 21 6 4.9324 -2.4513 6.7523 22 6 4.0427 -2.5278 5.7011 23 8 3.5234 -1.3818 2.1549 24 1 -0.3633 0.0757 1.0248 25 1 -0.3632 0.8498 -0.5779 26 1 -0.3633 -0.9254 -0.4470 27 1 -0.0464 3.0776 1.4125 28 1 3.1499 -1.1386 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 1.7836 -3.2129 4.1561 31 1 5.7326 -0.6342 3.4471 32 1 7.3017 -0.4996 5.3360 33 1 4.7161 -2.9609 7.6797 34 1 3.1303 -3.0962 5.8048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972539.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = 7.183078 kcal Electronic energy + Delta-G solvation = -20331.704893 eV Core-core repulsion = 16952.823296 eV Total energy + Delta-G solvation = -3378.881597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.96368 -44.09104 -39.92478 -37.65139 -35.63920 -33.90639 -32.94576 -32.25120 -30.20660 -28.08345 -27.49627 -24.62860 -24.30332 -23.29796 -22.48092 -21.74387 -19.01023 -18.85366 -18.23844 -17.59853 -17.22659 -17.11522 -16.66836 -16.62187 -15.55127 -15.36949 -15.30685 -14.93472 -14.72768 -14.48901 -14.11362 -13.79702 -13.58840 -13.31411 -13.14091 -12.88531 -12.61377 -12.37735 -12.22666 -12.10887 -12.07745 -11.94894 -11.47627 -10.75281 -10.65268 -10.22352 -9.10898 -8.89205 -7.93826 -5.45897 -0.48224 0.16202 0.87593 1.44774 1.45153 1.54428 1.75967 1.81205 2.45463 2.59822 3.14994 3.16373 3.37715 3.55101 3.64637 3.75440 3.82950 4.05975 4.16627 4.21862 4.56170 4.63716 4.72791 4.82809 4.85019 4.89698 4.96898 5.02217 5.16869 5.26947 5.40670 5.42200 5.57303 5.67042 5.75242 6.19441 6.87213 7.02270 7.67484 8.11203 9.08871 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.004745 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.726661 B = 5899.462975 C = 6882.220742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.592 5.592 3 C -0.275 4.275 4 H 0.082 0.918 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.973 3.027 8 H -0.278 1.278 9 H -0.298 1.298 10 H -0.266 1.266 11 C 0.226 3.774 12 C 0.192 3.808 13 N -0.517 5.517 14 C -0.025 4.025 15 C -0.046 4.046 16 C -0.029 4.029 17 C -0.089 4.089 18 C -0.147 4.147 19 C 0.091 3.909 20 F -0.140 7.140 21 C -0.138 4.138 22 C -0.068 4.068 23 O -0.210 6.210 24 H -0.004 1.004 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.250 0.750 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.213 0.787 31 H 0.129 0.871 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.526 -10.474 8.465 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.313 5.313 3 C -0.405 4.405 4 H 0.100 0.900 5 C -0.242 4.242 6 N -0.579 5.579 7 Si 0.800 3.200 8 H -0.204 1.204 9 H -0.224 1.224 10 H -0.191 1.191 11 C 0.096 3.904 12 C -0.017 4.017 13 N -0.247 5.247 14 C -0.164 4.164 15 C -0.099 4.099 16 C -0.030 4.030 17 C -0.107 4.107 18 C -0.166 4.166 19 C 0.072 3.928 20 F -0.119 7.119 21 C -0.157 4.157 22 C -0.086 4.086 23 O -0.097 6.097 24 H 0.014 0.986 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.230 0.770 31 H 0.147 0.853 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.901 -10.519 8.272 16.072 hybrid contribution 0.768 1.516 0.551 1.786 sum 9.669 -9.003 8.822 15.886 Atomic orbital electron populations 1.20634 0.81684 0.96907 0.97534 1.44475 1.02738 1.01041 1.83072 1.19688 0.98894 0.85821 1.36084 0.90006 1.25927 0.98157 1.02352 0.97726 1.70274 1.19097 1.27893 1.40644 0.85190 0.78576 0.79156 0.77080 1.20390 1.22428 1.19051 1.20103 0.98934 0.88594 0.82780 1.29305 0.80483 0.92316 0.99560 1.70326 1.30437 1.18929 1.04971 1.23791 0.92918 1.03073 0.96654 1.21760 0.99836 1.02051 0.86272 1.17882 0.93132 1.01130 0.90831 1.21201 0.92798 0.97322 0.99391 1.21212 1.01876 1.01775 0.91687 1.17977 0.89686 1.00241 0.84940 1.91501 1.68698 1.94863 1.56825 1.21308 0.92578 1.00494 1.01285 1.21162 1.00325 0.97510 0.89584 1.84483 1.43240 1.59450 1.22556 0.98560 0.95150 0.94248 0.94030 0.88861 0.86816 0.77031 0.85264 0.82570 0.81043 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 9.01 127.77 1.15 9.96 16 2 N -0.59 -29.38 2.91 -731.29 -2.13 -31.51 16 3 C -0.28 -14.79 9.67 84.03 0.81 -13.98 16 4 H 0.08 4.20 7.85 -2.91 -0.02 4.17 16 5 C -0.05 -2.53 5.13 84.86 0.44 -2.09 16 6 N -0.93 -55.42 10.58 21.65 0.23 -55.19 16 7 Si 0.97 44.47 29.57 68.60 2.03 46.50 16 8 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 9 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 C 0.23 9.03 6.33 85.63 0.54 9.57 16 12 C 0.19 8.13 7.91 88.33 0.70 8.83 16 13 N -0.52 -21.27 11.27 -302.84 -3.41 -24.69 16 14 C -0.02 -0.84 11.29 83.76 0.95 0.10 16 15 C -0.05 -1.63 7.07 24.24 0.17 -1.46 16 16 C -0.03 -0.82 5.87 -20.09 -0.12 -0.94 16 17 C -0.09 -2.39 9.73 22.52 0.22 -2.17 16 18 C -0.15 -3.25 10.01 22.28 0.22 -3.03 16 19 C 0.09 1.90 7.30 22.43 0.16 2.07 16 20 F -0.14 -2.96 17.26 44.97 0.78 -2.18 16 21 C -0.14 -2.49 10.01 22.28 0.22 -2.26 16 22 C -0.07 -1.41 9.57 22.52 0.22 -1.19 16 23 O -0.21 -8.83 10.59 -7.92 -0.08 -8.91 16 24 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 25 H 0.03 1.59 7.19 -2.39 -0.02 1.58 16 26 H 0.04 1.65 7.84 -2.39 -0.02 1.63 16 27 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.09 3.35 8.03 -2.39 -0.02 3.33 16 29 H 0.11 3.89 7.86 -2.39 -0.02 3.87 16 30 H 0.21 5.25 7.30 -2.91 -0.02 5.23 16 31 H 0.13 3.65 7.94 -2.91 -0.02 3.63 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.16 2.48 7.04 -2.91 -0.02 2.46 16 Total: -1.00 -68.32 305.31 4.22 -64.11 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.12 Total: 8.47 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.68 Total: 3.40 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -5.31 Total: -111.38 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.08 Total: -8.91 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.32 4.22 -64.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972539.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.289 kcal (2) G-P(sol) polarization free energy of solvation -68.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds