Wall clock time and date at job start Mon Mar 30 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48502 * 109.46858 * 239.99994 * 3 2 1 5 5 H 1.48497 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47433 * 119.99897 * 3 2 1 7 7 C 1.37869 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00328 * 173.70442 * 7 2 1 9 9 C 1.50697 * 120.00301 * 353.70905 * 7 2 1 10 10 C 1.53000 * 115.55253 * 86.10921 * 9 7 2 11 11 O 1.42898 * 109.47276 * 65.11443 * 10 9 7 12 12 C 1.35898 * 117.00064 * 180.02562 * 11 10 9 13 13 C 1.38739 * 120.05186 * 179.97438 * 12 11 10 14 14 C 1.38147 * 119.93806 * 179.97438 * 13 12 11 15 15 C 1.38264 * 120.06029 * 0.27684 * 14 13 12 16 16 C 1.50695 * 119.94666 * 179.72516 * 15 14 13 17 17 C 1.50701 * 109.47073 * 89.99737 * 16 15 14 18 18 O 1.20826 * 120.00269 * 0.02562 * 17 16 15 19 19 O 1.34229 * 119.99702 * 179.97438 * 17 16 15 20 20 C 1.38272 * 120.10772 * 359.44894 * 15 14 13 21 21 C 1.38140 * 120.05441 * 0.55157 * 20 15 14 22 22 C 1.53002 * 117.49685 * 231.78128 * 9 7 2 23 23 C 1.53003 * 117.49857 * 300.44033 * 9 7 2 24 24 H 0.97006 * 120.00045 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47164 * 305.11058 * 10 9 7 26 26 H 1.09003 * 109.46829 * 185.11206 * 10 9 7 27 27 H 1.08000 * 120.03204 * 359.95801 * 13 12 11 28 28 H 1.08004 * 119.96604 * 179.97438 * 14 13 12 29 29 H 1.08997 * 109.47165 * 210.00138 * 16 15 14 30 30 H 1.09006 * 109.47123 * 330.00010 * 16 15 14 31 31 H 0.96698 * 117.00319 * 179.97438 * 19 17 16 32 32 H 1.07995 * 119.97089 * 180.25374 * 20 15 14 33 33 H 1.08007 * 120.02996 * 179.70624 * 21 20 15 34 34 H 1.09004 * 117.49828 * 214.99620 * 22 9 7 35 35 H 1.08992 * 117.50567 * 0.02562 * 22 9 7 36 36 H 1.09002 * 117.49588 * 359.97367 * 23 9 7 37 37 H 1.08991 * 117.50099 * 144.97197 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0797 -1.1969 -0.1020 9 6 1.2579 -2.4951 0.1441 10 6 0.7193 -3.0940 -1.1567 11 8 1.8125 -3.4601 -2.0010 12 6 1.5049 -4.0107 -3.2048 13 6 2.5173 -4.3890 -4.0748 14 6 2.2019 -4.9490 -5.2977 15 6 0.8788 -5.1273 -5.6573 16 6 0.5377 -5.7326 -6.9944 17 6 0.4403 -7.2303 -6.8576 18 8 0.6281 -7.7524 -5.7843 19 8 0.1438 -7.9840 -7.9280 20 6 -0.1318 -4.7562 -4.7896 21 6 0.1783 -4.1958 -3.5656 22 6 1.7340 -3.4672 1.2254 23 6 0.4252 -2.6956 1.4120 24 1 -0.4850 0.8401 -0.0004 25 1 0.0978 -2.3574 -1.6659 26 1 0.1233 -3.9781 -0.9303 27 1 3.5509 -4.2457 -3.7964 28 1 2.9896 -5.2433 -5.9754 29 1 -0.4172 -5.3364 -7.3397 30 1 1.3164 -5.4836 -7.7154 31 1 0.0928 -8.9400 -7.7913 32 1 -1.1644 -4.9002 -5.0710 33 1 -0.6115 -3.9017 -2.8901 34 1 1.6636 -4.5334 1.0101 35 1 2.5870 -3.1655 1.8332 36 1 0.4178 -1.8865 2.1424 37 1 -0.5064 -3.2537 1.3193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088248944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:06 Heat of formation + Delta-G solvation = -104.461031 kcal Electronic energy + Delta-G solvation = -20496.538062 eV Core-core repulsion = 17203.982767 eV Total energy + Delta-G solvation = -3292.555295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42309 -40.77169 -38.96670 -37.61031 -36.92955 -34.03622 -33.24059 -31.98321 -29.09873 -27.88145 -27.19009 -23.76208 -23.43488 -22.95384 -21.61125 -21.02844 -19.00655 -18.99583 -18.25057 -17.41044 -17.10934 -16.83330 -16.44313 -16.31532 -16.21348 -15.49413 -15.25752 -14.75139 -14.37403 -14.12312 -13.97974 -13.47001 -13.37115 -13.06801 -12.90932 -12.81976 -12.55636 -12.44089 -12.39934 -12.13034 -11.88434 -11.79838 -11.52548 -11.44601 -10.80565 -10.49334 -10.10122 -9.92229 -9.00006 -8.15143 -6.25565 0.41684 0.43599 1.31440 1.41058 1.41793 1.49588 2.24298 2.37788 2.44102 2.94305 3.13814 3.49600 3.69541 3.85817 3.98865 4.14264 4.32359 4.37738 4.40923 4.45721 4.52332 4.61641 4.66548 4.69771 4.76253 4.90912 4.94719 5.11011 5.16363 5.33030 5.44837 5.54440 5.56899 5.58028 5.70560 5.73194 5.93141 6.35122 6.66638 6.77813 7.08753 7.42430 8.93497 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028636 B = 0.003704 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.550219 B = 7557.006556 C = 7943.766575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.047 0.953 9 C 0.006 3.994 10 C 0.122 3.878 11 O -0.321 6.321 12 C 0.113 3.887 13 C -0.174 4.174 14 C -0.061 4.061 15 C -0.132 4.132 16 C -0.059 4.059 17 C 0.482 3.518 18 O -0.553 6.553 19 O -0.512 6.512 20 C -0.065 4.065 21 C -0.228 4.228 22 C -0.186 4.186 23 C -0.142 4.142 24 H 0.262 0.738 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.131 0.869 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.425 0.575 32 H 0.145 0.855 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -12.079 -16.003 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.173 4.173 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.006 3.994 10 C 0.047 3.953 11 O -0.235 6.235 12 C 0.067 3.933 13 C -0.193 4.193 14 C -0.079 4.079 15 C -0.133 4.133 16 C -0.096 4.096 17 C 0.326 3.674 18 O -0.443 6.443 19 O -0.326 6.326 20 C -0.083 4.083 21 C -0.247 4.247 22 C -0.223 4.223 23 C -0.179 4.179 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.149 0.851 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.287 0.713 32 H 0.163 0.837 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.877 -11.632 -15.675 19.539 hybrid contribution 0.002 0.425 0.702 0.821 sum -0.875 -11.207 -14.973 18.723 Atomic orbital electron populations 1.70074 1.06885 1.27389 1.49966 1.25649 0.95680 1.01865 0.94147 0.85736 0.78596 0.79300 0.78777 1.20057 1.20522 1.19580 1.20577 0.92712 0.90212 1.51172 0.93471 1.18865 1.00295 0.94439 0.85794 1.22236 0.86664 0.95746 0.90634 1.86118 1.36715 1.74782 1.25871 1.19691 0.94486 0.92977 0.86155 1.20635 0.98490 1.05326 0.94861 1.21092 0.96769 0.95351 0.94689 1.19411 0.93188 1.03729 0.96956 1.20263 1.08315 0.85411 0.95581 1.23817 0.71066 0.91716 0.80791 1.90776 1.47503 1.75597 1.30472 1.84492 1.82110 1.26556 1.39457 1.21042 1.00271 0.95121 0.91866 1.21382 0.95048 1.07857 1.00427 1.23003 0.97853 0.96443 1.05041 1.22456 0.93420 1.01046 1.01017 0.92885 0.93997 0.93774 0.85099 0.82506 0.84286 0.83798 0.71309 0.83730 0.86209 0.89439 0.90083 0.91251 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.53 12.88 21.44 0.28 -51.25 16 2 C 0.03 1.51 5.38 84.65 0.46 1.96 16 3 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.51 -28.86 8.77 25.60 0.22 -28.63 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 9 C 0.01 0.33 1.62 -52.93 -0.09 0.25 16 10 C 0.12 5.83 4.56 71.98 0.33 6.16 16 11 O -0.32 -15.13 10.06 -92.40 -0.93 -16.06 16 12 C 0.11 4.49 6.69 22.51 0.15 4.64 16 13 C -0.17 -5.82 9.99 22.37 0.22 -5.59 16 14 C -0.06 -1.57 9.69 22.25 0.22 -1.35 16 15 C -0.13 -3.13 4.38 -19.85 -0.09 -3.22 16 16 C -0.06 -0.83 5.94 29.10 0.17 -0.65 16 17 C 0.48 8.60 8.32 71.24 0.59 9.19 16 18 O -0.55 -15.27 16.79 21.96 0.37 -14.90 16 19 O -0.51 -5.93 13.42 -51.40 -0.69 -6.62 16 20 C -0.07 -1.80 9.69 22.25 0.22 -1.58 16 21 C -0.23 -8.10 9.04 22.36 0.20 -7.89 16 22 C -0.19 -8.29 9.96 30.62 0.30 -7.98 16 23 C -0.14 -6.66 9.37 30.62 0.29 -6.37 16 24 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 25 H 0.04 2.17 7.66 -2.39 -0.02 2.15 16 26 H 0.04 1.92 7.61 -2.39 -0.02 1.90 16 27 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.14 1.26 8.09 -2.39 -0.02 1.24 16 30 H 0.14 1.17 8.08 -2.38 -0.02 1.15 16 31 H 0.43 1.87 9.10 -74.06 -0.67 1.20 16 32 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.12 4.34 6.30 -2.91 -0.02 4.32 16 34 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 35 H 0.08 3.55 8.14 -2.39 -0.02 3.54 16 36 H 0.07 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -71.76 327.14 4.66 -67.10 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.41 Total: 16.79 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 3.20 Total: -41.08 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.28 Total: -51.25 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.25 Total: -37.58 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.76 4.66 -67.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.361 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds