Wall clock time and date at job start Mon Mar 30 2020 01:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99823 * 2 1 4 4 H 1.48502 * 109.46822 * 269.99689 * 3 2 1 5 5 H 1.48494 * 109.47378 * 29.99746 * 3 2 1 6 6 H 1.48501 * 109.47099 * 150.00005 * 3 2 1 7 7 C 1.37875 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00224 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99601 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46903 * 179.97438 * 9 7 2 11 11 O 1.45204 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.34224 * 116.99708 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00455 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99890 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.69280 * 60.54774 * 14 12 11 16 16 C 1.53415 * 109.69462 * 300.00076 * 14 12 11 17 17 O 1.42827 * 108.38065 * 175.62368 * 16 14 12 18 18 C 1.35845 * 117.84467 * 49.27959 * 17 16 14 19 19 C 1.39144 * 118.50103 * 162.76354 * 18 17 16 20 20 C 1.37978 * 120.21198 * 179.30924 * 19 18 17 21 21 C 1.38282 * 119.95509 * 0.24294 * 20 19 18 22 22 C 1.38102 * 119.98939 * 0.09157 * 21 20 19 23 23 C 1.38376 * 121.80244 * 342.73484 * 18 17 16 24 24 C 1.50763 * 121.40585 * 0.79094 * 23 18 17 25 25 H 0.96994 * 120.00202 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47108 * 60.00107 * 9 7 2 27 27 H 1.09000 * 109.47082 * 299.99287 * 9 7 2 28 28 H 1.09009 * 109.47223 * 59.99876 * 10 9 7 29 29 H 1.08995 * 109.47072 * 300.00052 * 10 9 7 30 30 H 1.09000 * 109.67975 * 55.90318 * 16 14 12 31 31 H 1.08999 * 109.71394 * 295.36993 * 16 14 12 32 32 H 1.08002 * 119.89570 * 359.59368 * 19 18 17 33 33 H 1.08002 * 120.01565 * 180.21523 * 20 19 18 34 34 H 1.08003 * 120.00494 * 180.11391 * 21 20 19 35 35 H 1.08007 * 119.84007 * 180.02562 * 22 21 20 36 36 H 1.09006 * 109.43430 * 102.32156 * 24 23 18 37 37 H 1.08999 * 109.43652 * 222.18895 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 8 5.4735 -2.6366 0.0022 12 6 6.0828 -3.8326 0.0037 13 8 5.4248 -4.8459 0.0046 14 6 7.5877 -3.9115 0.0044 15 1 7.9807 -3.4259 0.8976 16 6 8.1423 -3.2187 -1.2471 17 8 9.5684 -3.2194 -1.1676 18 6 10.1871 -4.3934 -0.8770 19 6 11.5469 -4.5119 -1.1470 20 6 12.2137 -5.6835 -0.8527 21 6 11.5285 -6.7458 -0.2923 22 6 10.1773 -6.6342 -0.0293 23 6 9.5023 -5.4613 -0.3243 24 6 8.0255 -5.3809 -0.0319 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.6585 -3.1511 -0.8876 29 1 3.6578 -3.1498 0.8924 30 1 7.7776 -2.1924 -1.2905 31 1 7.8239 -3.7594 -2.1383 32 1 12.0832 -3.6825 -1.5840 33 1 13.2700 -5.7707 -1.0603 34 1 12.0500 -7.6626 -0.0599 35 1 9.6446 -7.4653 0.4088 36 1 7.4731 -5.9146 -0.8054 37 1 7.8224 -5.8361 0.9375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105389670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:33 Heat of formation + Delta-G solvation = -112.569431 kcal Electronic energy + Delta-G solvation = -20448.583563 eV Core-core repulsion = 17155.676661 eV Total energy + Delta-G solvation = -3292.906902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21129 -39.96169 -37.73236 -36.50084 -34.47919 -33.36410 -31.35102 -30.63376 -30.47779 -26.15950 -25.70947 -24.41342 -22.84479 -21.52637 -20.71626 -19.86920 -18.15889 -17.82293 -17.03262 -16.62350 -16.20677 -15.95798 -15.64720 -14.95724 -14.73554 -14.28373 -14.14460 -13.79045 -13.59873 -13.41766 -13.20061 -13.00403 -12.52223 -12.04261 -11.79794 -11.61106 -11.43631 -11.34682 -11.12001 -10.91811 -10.76011 -10.59462 -10.05322 -9.96733 -9.78552 -9.39860 -9.06822 -8.66347 -8.43285 -6.16807 -4.18567 1.02809 1.15114 2.27075 2.78204 3.08695 3.25046 3.32829 3.36596 3.48993 4.16838 4.31360 4.34984 4.49371 4.56316 4.74970 4.79949 5.00308 5.11045 5.15839 5.16645 5.22537 5.33484 5.41703 5.63529 5.67045 5.78476 5.87144 5.88874 6.00636 6.18259 6.25015 6.37143 6.48592 6.66550 7.10176 7.15539 7.16055 7.57285 7.95070 8.35049 8.84426 9.42445 10.95702 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041389 B = 0.003192 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.347577 B = 8768.676944 C = 9339.121960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.358 6.358 12 C 0.465 3.535 13 O -0.506 6.506 14 C -0.121 4.121 15 H 0.123 0.877 16 C 0.073 3.927 17 O -0.308 6.308 18 C 0.128 3.872 19 C -0.147 4.147 20 C -0.090 4.090 21 C -0.152 4.152 22 C -0.082 4.082 23 C -0.155 4.155 24 C -0.064 4.064 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.267 -10.474 -1.375 26.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.009 3.991 11 O -0.275 6.275 12 C 0.307 3.693 13 O -0.394 6.394 14 C -0.140 4.140 15 H 0.141 0.859 16 C -0.003 4.003 17 O -0.221 6.221 18 C 0.083 3.917 19 C -0.166 4.166 20 C -0.108 4.108 21 C -0.171 4.171 22 C -0.100 4.100 23 C -0.156 4.156 24 C -0.101 4.101 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.111 0.889 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 23.923 -10.440 -1.411 26.140 hybrid contribution -0.074 0.639 0.119 0.654 sum 23.848 -9.802 -1.292 25.816 Atomic orbital electron populations 1.69892 1.06298 1.27277 1.49939 1.24940 0.94774 0.99212 0.94069 0.86745 0.80421 0.83240 0.78770 1.20017 1.21142 1.18745 1.20827 0.88218 0.95059 1.52595 0.90654 1.19634 0.97065 0.90024 0.97948 1.23452 0.71874 1.01788 1.01941 1.86480 1.26635 1.31806 1.82559 1.22992 0.90698 0.82432 0.73181 1.90661 1.66982 1.36616 1.45168 1.21762 0.90018 0.99459 1.02806 0.85942 1.22986 0.77769 1.03835 0.95665 1.86067 1.21045 1.29331 1.85678 1.18785 0.92311 0.85283 0.95357 1.20617 0.92098 0.99325 1.04556 1.20941 0.99762 0.92465 0.97644 1.21025 0.94438 0.99341 1.02265 1.20911 0.94384 0.96386 0.98361 1.19820 0.96147 0.95129 1.04538 1.20443 0.91073 0.93996 1.04562 0.92379 0.95332 0.95747 0.91552 0.91533 0.85540 0.90861 0.85131 0.85438 0.85834 0.85604 0.88864 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.53 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 10 C 0.08 1.69 5.40 37.16 0.20 1.89 16 11 O -0.36 -6.38 10.08 -39.24 -0.40 -6.77 16 12 C 0.47 7.29 7.26 36.00 0.26 7.55 16 13 O -0.51 -9.19 15.55 -18.75 -0.29 -9.48 16 14 C -0.12 -1.43 2.89 -91.37 -0.26 -1.70 16 15 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.07 0.80 6.27 37.37 0.23 1.04 16 17 O -0.31 -3.62 10.27 -19.25 -0.20 -3.81 16 18 C 0.13 1.43 6.47 -39.19 -0.25 1.18 16 19 C -0.15 -1.42 9.94 -39.34 -0.39 -1.81 16 20 C -0.09 -0.73 10.04 -39.66 -0.40 -1.12 16 21 C -0.15 -1.23 10.04 -39.61 -0.40 -1.63 16 22 C -0.08 -0.75 9.67 -39.53 -0.38 -1.13 16 23 C -0.16 -1.65 5.75 -104.44 -0.60 -2.25 16 24 C -0.06 -0.70 4.64 -27.66 -0.13 -0.83 16 25 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 27 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 28 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 29 H 0.07 1.39 8.13 -51.93 -0.42 0.96 16 30 H 0.13 1.31 8.05 -51.93 -0.42 0.90 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 36 H 0.09 1.07 7.74 -51.93 -0.40 0.67 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -31.49 315.78 -7.67 -39.16 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.98 Total: -1.67 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.67 Total: -12.33 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.32 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.88 Total: -20.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.49 -7.67 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105389670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.405 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds