Wall clock time and date at job start Mon Mar 30 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99823 * 2 1 4 4 H 1.48502 * 109.46822 * 269.99689 * 3 2 1 5 5 H 1.48494 * 109.47378 * 29.99746 * 3 2 1 6 6 H 1.48501 * 109.47099 * 150.00005 * 3 2 1 7 7 C 1.37875 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00224 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99601 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46903 * 179.97438 * 9 7 2 11 11 O 1.45204 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.34224 * 116.99708 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00455 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99890 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.69280 * 60.54774 * 14 12 11 16 16 C 1.53415 * 109.69462 * 300.00076 * 14 12 11 17 17 O 1.42827 * 108.38065 * 175.62368 * 16 14 12 18 18 C 1.35845 * 117.84467 * 49.27959 * 17 16 14 19 19 C 1.39144 * 118.50103 * 162.76354 * 18 17 16 20 20 C 1.37978 * 120.21198 * 179.30924 * 19 18 17 21 21 C 1.38282 * 119.95509 * 0.24294 * 20 19 18 22 22 C 1.38102 * 119.98939 * 0.09157 * 21 20 19 23 23 C 1.38376 * 121.80244 * 342.73484 * 18 17 16 24 24 C 1.50763 * 121.40585 * 0.79094 * 23 18 17 25 25 H 0.96994 * 120.00202 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47108 * 60.00107 * 9 7 2 27 27 H 1.09000 * 109.47082 * 299.99287 * 9 7 2 28 28 H 1.09009 * 109.47223 * 59.99876 * 10 9 7 29 29 H 1.08995 * 109.47072 * 300.00052 * 10 9 7 30 30 H 1.09000 * 109.67975 * 55.90318 * 16 14 12 31 31 H 1.08999 * 109.71394 * 295.36993 * 16 14 12 32 32 H 1.08002 * 119.89570 * 359.59368 * 19 18 17 33 33 H 1.08002 * 120.01565 * 180.21523 * 20 19 18 34 34 H 1.08003 * 120.00494 * 180.11391 * 21 20 19 35 35 H 1.08007 * 119.84007 * 180.02562 * 22 21 20 36 36 H 1.09006 * 109.43430 * 102.32156 * 24 23 18 37 37 H 1.08999 * 109.43652 * 222.18895 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 8 5.4735 -2.6366 0.0022 12 6 6.0828 -3.8326 0.0037 13 8 5.4248 -4.8459 0.0046 14 6 7.5877 -3.9115 0.0044 15 1 7.9807 -3.4259 0.8976 16 6 8.1423 -3.2187 -1.2471 17 8 9.5684 -3.2194 -1.1676 18 6 10.1871 -4.3934 -0.8770 19 6 11.5469 -4.5119 -1.1470 20 6 12.2137 -5.6835 -0.8527 21 6 11.5285 -6.7458 -0.2923 22 6 10.1773 -6.6342 -0.0293 23 6 9.5023 -5.4613 -0.3243 24 6 8.0255 -5.3809 -0.0319 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.6585 -3.1511 -0.8876 29 1 3.6578 -3.1498 0.8924 30 1 7.7776 -2.1924 -1.2905 31 1 7.8239 -3.7594 -2.1383 32 1 12.0832 -3.6825 -1.5840 33 1 13.2700 -5.7707 -1.0603 34 1 12.0500 -7.6626 -0.0599 35 1 9.6446 -7.4653 0.4088 36 1 7.4731 -5.9146 -0.8054 37 1 7.8224 -5.8361 0.9375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105389670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:32 Heat of formation + Delta-G solvation = -130.195049 kcal Electronic energy + Delta-G solvation = -20449.347867 eV Core-core repulsion = 17155.676661 eV Total energy + Delta-G solvation = -3293.671206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19348 -41.13188 -38.47719 -37.93424 -35.48245 -35.33994 -32.88741 -31.85124 -31.19530 -27.56770 -26.78824 -25.64381 -23.58148 -22.84780 -22.34148 -20.86462 -19.36062 -18.90923 -18.61772 -17.86927 -17.54451 -17.01355 -16.57740 -16.26469 -15.93791 -15.62419 -15.07282 -14.93574 -14.75017 -14.54503 -14.30831 -14.23993 -13.90724 -13.33250 -13.19549 -12.75209 -12.59544 -12.51318 -12.46118 -12.20597 -11.93898 -11.83137 -11.71725 -11.56590 -11.47896 -11.38334 -10.82021 -9.75822 -9.16990 -8.35275 -6.43706 0.34239 0.45364 0.98867 1.38272 1.39931 1.50601 1.52895 2.23802 2.33768 2.79564 2.99834 3.22873 3.41095 3.54156 3.79025 3.87157 3.99763 4.14977 4.16440 4.26641 4.30902 4.42014 4.50684 4.58313 4.60815 4.65836 4.80401 4.86995 5.01651 5.08448 5.27601 5.33133 5.44839 5.50540 5.51539 5.60141 5.84440 6.14212 6.38561 6.57554 6.62828 7.21573 8.80807 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041389 B = 0.003192 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.347577 B = 8768.676944 C = 9339.121960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.243 1.243 7 C -0.543 4.543 8 H 0.035 0.965 9 C -0.004 4.004 10 C 0.093 3.907 11 O -0.356 6.356 12 C 0.468 3.532 13 O -0.532 6.532 14 C -0.110 4.110 15 H 0.136 0.864 16 C 0.074 3.926 17 O -0.316 6.316 18 C 0.102 3.898 19 C -0.158 4.158 20 C -0.087 4.087 21 C -0.151 4.151 22 C -0.091 4.091 23 C -0.168 4.168 24 C -0.059 4.059 25 H 0.270 0.730 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.470 -10.158 -1.341 29.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.581 4.581 8 H 0.053 0.947 9 C -0.042 4.042 10 C 0.019 3.981 11 O -0.272 6.272 12 C 0.312 3.688 13 O -0.421 6.421 14 C -0.129 4.129 15 H 0.154 0.846 16 C -0.001 4.001 17 O -0.230 6.230 18 C 0.057 3.943 19 C -0.176 4.176 20 C -0.105 4.105 21 C -0.169 4.169 22 C -0.109 4.109 23 C -0.169 4.169 24 C -0.096 4.096 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.102 0.898 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 27.154 -10.148 -1.378 29.020 hybrid contribution -1.030 0.380 0.107 1.104 sum 26.123 -9.768 -1.270 27.918 Atomic orbital electron populations 1.70042 1.08368 1.28642 1.51376 1.25961 0.95660 1.03617 0.93430 0.85601 0.79548 0.77636 0.79569 1.18724 1.20767 1.16627 1.21119 0.90780 0.93764 1.52419 0.94670 1.19473 0.94091 0.91964 0.98624 1.23003 0.73811 0.99911 1.01341 1.86465 1.24670 1.33100 1.82974 1.23724 0.92026 0.81261 0.71781 1.90656 1.67880 1.37255 1.46313 1.21808 0.86573 1.00583 1.03980 0.84586 1.22994 0.77872 1.04126 0.95132 1.86054 1.20921 1.29954 1.86044 1.19077 0.93140 0.85375 0.96669 1.20891 0.91666 1.00401 1.04679 1.21325 1.01126 0.91651 0.96414 1.21397 0.94073 1.00324 1.01095 1.21177 0.95159 0.96263 0.98281 1.19841 0.95707 0.95857 1.05507 1.20394 0.91618 0.93120 1.04508 0.92056 0.94607 0.94495 0.92151 0.92344 0.84872 0.90664 0.84231 0.82620 0.83246 0.84215 0.89806 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 2 C 0.01 0.65 5.47 84.65 0.46 1.12 16 3 Si 0.95 42.86 27.47 68.60 1.88 44.75 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 7 C -0.54 -31.02 9.66 25.60 0.25 -30.77 16 8 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 9 C 0.00 -0.19 4.42 29.85 0.13 -0.06 16 10 C 0.09 3.82 5.40 71.98 0.39 4.21 16 11 O -0.36 -12.30 10.08 -51.36 -0.52 -12.82 16 12 C 0.47 14.38 7.26 71.24 0.52 14.90 16 13 O -0.53 -19.31 15.55 21.96 0.34 -18.97 16 14 C -0.11 -2.49 2.89 -11.28 -0.03 -2.52 16 15 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 16 C 0.07 1.55 6.27 72.12 0.45 2.00 16 17 O -0.32 -7.06 10.27 -91.80 -0.94 -8.00 16 18 C 0.10 2.15 6.47 22.52 0.15 2.30 16 19 C -0.16 -2.73 9.94 22.43 0.22 -2.51 16 20 C -0.09 -1.15 10.04 22.22 0.22 -0.93 16 21 C -0.15 -1.98 10.04 22.25 0.22 -1.76 16 22 C -0.09 -1.47 9.67 22.30 0.22 -1.25 16 23 C -0.17 -3.36 5.75 -19.75 -0.11 -3.47 16 24 C -0.06 -1.25 4.64 29.99 0.14 -1.11 16 25 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 26 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 27 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 28 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 30 H 0.13 2.57 8.05 -2.39 -0.02 2.55 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.08 1.90 7.74 -2.38 -0.02 1.88 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.38 315.78 5.30 -63.09 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.01 Total: 9.90 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 3.22 Total: -19.86 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.30 Total: -58.10 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.12 Total: -39.79 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.75 kcal Total: -68.38 5.30 -63.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105389670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.107 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds