Wall clock time and date at job start Mon Mar 30 2020 01:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 O 1.45199 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.34229 * 117.00070 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00043 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00094 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.69328 * 300.55600 * 14 12 11 16 16 C 1.53406 * 109.69545 * 61.14993 * 14 12 11 17 17 O 1.42835 * 108.37260 * 184.41494 * 16 14 12 18 18 C 1.35840 * 117.85703 * 310.79847 * 17 16 14 19 19 C 1.39147 * 118.49494 * 196.97447 * 18 17 16 20 20 C 1.37975 * 120.21087 * 180.44290 * 19 18 17 21 21 C 1.38285 * 119.95960 * 359.96382 * 20 19 18 22 22 C 1.38105 * 119.98458 * 359.92692 * 21 20 19 23 23 C 1.38375 * 121.80599 * 17.25933 * 18 17 16 24 24 C 1.50767 * 121.40161 * 359.47925 * 23 18 17 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08999 * 109.68396 * 304.13276 * 16 14 12 31 31 H 1.08993 * 109.68843 * 64.69871 * 16 14 12 32 32 H 1.07999 * 119.89451 * 0.39944 * 19 18 17 33 33 H 1.07998 * 120.01632 * 179.97438 * 20 19 18 34 34 H 1.07991 * 120.00631 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.84234 * 180.02562 * 22 21 20 36 36 H 1.09002 * 109.43945 * 257.76231 * 24 23 18 37 37 H 1.09005 * 109.40130 * 137.87679 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 8 5.4735 -2.6366 0.0175 12 6 6.0829 -3.8326 0.0219 13 8 5.4248 -4.8459 0.0208 14 6 7.5878 -3.9115 0.0284 15 1 7.9857 -3.4112 -0.8545 16 6 8.1353 -3.2406 1.2947 17 8 9.5618 -3.2393 1.2226 18 6 10.1828 -4.4071 0.9130 19 6 11.5425 -4.5278 1.1828 20 6 12.2106 -5.6949 0.8743 21 6 11.5279 -6.7492 0.2959 22 6 10.1779 -6.6338 0.0288 23 6 9.5017 -5.4648 0.3366 24 6 8.0276 -5.3776 0.0327 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 7.7698 -2.2155 1.3544 31 1 7.8127 -3.7978 2.1742 32 1 12.0768 -3.7050 1.6344 33 1 13.2661 -5.7850 1.0846 34 1 12.0502 -7.6629 0.0537 35 1 9.6469 -7.4587 -0.4226 36 1 7.4676 -5.9221 0.7931 37 1 7.8329 -5.8176 -0.9455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105389673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:35 Heat of formation + Delta-G solvation = -112.586638 kcal Electronic energy + Delta-G solvation = -20447.572245 eV Core-core repulsion = 17154.664597 eV Total energy + Delta-G solvation = -3292.907648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21800 -39.96257 -37.73359 -36.50430 -34.49122 -33.36413 -31.35025 -30.63580 -30.48114 -26.16385 -25.71756 -24.41178 -22.84609 -21.52889 -20.71556 -19.85791 -18.16153 -17.83583 -17.03178 -16.62679 -16.20538 -15.96301 -15.64926 -14.95879 -14.73908 -14.27448 -14.15383 -13.79585 -13.58942 -13.41834 -13.20755 -13.00491 -12.52506 -12.04146 -11.78798 -11.61659 -11.42659 -11.35709 -11.12122 -10.92714 -10.75554 -10.59817 -10.05298 -9.96728 -9.78614 -9.39881 -9.06743 -8.66347 -8.43220 -6.16842 -4.18566 1.02804 1.15098 2.26826 2.77845 3.08424 3.25167 3.32825 3.36442 3.49026 4.18025 4.30689 4.34961 4.49312 4.55938 4.75426 4.80018 5.00376 5.11072 5.15597 5.16632 5.22484 5.33474 5.41684 5.63284 5.66990 5.78536 5.87105 5.88847 6.00587 6.18275 6.25001 6.37161 6.48562 6.66519 7.10398 7.15311 7.15923 7.57276 7.95008 8.35037 8.84427 9.42419 10.95658 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041431 B = 0.003189 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.659935 B = 8777.669090 C = 9342.205853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.358 6.358 12 C 0.465 3.535 13 O -0.506 6.506 14 C -0.121 4.121 15 H 0.122 0.878 16 C 0.073 3.927 17 O -0.308 6.308 18 C 0.128 3.872 19 C -0.147 4.147 20 C -0.090 4.090 21 C -0.152 4.152 22 C -0.082 4.082 23 C -0.155 4.155 24 C -0.064 4.064 25 H 0.266 0.734 26 H 0.024 0.976 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.261 -10.491 1.474 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.009 3.991 11 O -0.275 6.275 12 C 0.307 3.693 13 O -0.394 6.394 14 C -0.141 4.141 15 H 0.140 0.860 16 C -0.002 4.002 17 O -0.221 6.221 18 C 0.083 3.917 19 C -0.166 4.166 20 C -0.108 4.108 21 C -0.171 4.171 22 C -0.100 4.100 23 C -0.156 4.156 24 C -0.101 4.101 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.111 0.889 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 23.916 -10.458 1.521 26.147 hybrid contribution -0.074 0.639 -0.162 0.663 sum 23.842 -9.819 1.359 25.821 Atomic orbital electron populations 1.69892 1.06300 1.27273 1.49931 1.24942 0.94773 0.99212 0.94067 0.86746 0.80411 0.83238 0.78774 1.20031 1.21140 1.18739 1.20828 0.88218 0.95058 1.52604 0.90654 1.19632 0.97063 0.90024 0.97951 1.23450 0.71873 1.01790 1.01942 1.86481 1.26635 1.31796 1.82556 1.22985 0.90688 0.82431 0.73184 1.90660 1.66977 1.36619 1.45165 1.21691 0.90058 0.99591 1.02719 0.86014 1.22978 0.77781 1.03943 0.95494 1.86065 1.20963 1.29887 1.85203 1.18785 0.92296 0.85417 0.95240 1.20614 0.92075 0.99364 1.04541 1.20940 0.99766 0.92521 0.97583 1.21025 0.94460 0.99407 1.02178 1.20909 0.94370 0.96362 0.98396 1.19815 0.96195 0.95308 1.04303 1.20393 0.91139 0.94063 1.04534 0.92378 0.95756 0.95324 0.91530 0.91555 0.85533 0.90855 0.85130 0.85437 0.85833 0.85605 0.88908 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.53 -14.82 9.66 -34.44 -0.33 -15.16 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 10 C 0.08 1.69 5.40 37.16 0.20 1.89 16 11 O -0.36 -6.38 10.11 -39.26 -0.40 -6.78 16 12 C 0.47 7.30 7.25 36.01 0.26 7.56 16 13 O -0.51 -9.19 15.54 -18.75 -0.29 -9.48 16 14 C -0.12 -1.44 2.86 -91.53 -0.26 -1.70 16 15 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 16 C 0.07 0.81 6.28 37.37 0.23 1.04 16 17 O -0.31 -3.62 10.27 -19.24 -0.20 -3.82 16 18 C 0.13 1.43 6.47 -39.19 -0.25 1.18 16 19 C -0.15 -1.42 9.94 -39.34 -0.39 -1.81 16 20 C -0.09 -0.72 10.04 -39.66 -0.40 -1.12 16 21 C -0.15 -1.23 10.04 -39.61 -0.40 -1.63 16 22 C -0.08 -0.75 9.67 -39.53 -0.38 -1.13 16 23 C -0.16 -1.65 5.75 -104.44 -0.60 -2.25 16 24 C -0.06 -0.70 4.67 -27.82 -0.13 -0.83 16 25 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.56 7.58 -51.93 -0.39 0.17 16 27 H 0.03 0.67 7.19 -51.93 -0.37 0.29 16 28 H 0.07 1.38 8.13 -51.93 -0.42 0.95 16 29 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 30 H 0.13 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -31.49 315.79 -7.67 -39.16 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.98 Total: -1.67 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.67 Total: -12.33 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.32 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.89 Total: -20.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.49 -7.67 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105389673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.427 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds