Wall clock time and date at job start Mon Mar 30 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 O 1.45199 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.34229 * 117.00070 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00043 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00094 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.69328 * 300.55600 * 14 12 11 16 16 C 1.53406 * 109.69545 * 61.14993 * 14 12 11 17 17 O 1.42835 * 108.37260 * 184.41494 * 16 14 12 18 18 C 1.35840 * 117.85703 * 310.79847 * 17 16 14 19 19 C 1.39147 * 118.49494 * 196.97447 * 18 17 16 20 20 C 1.37975 * 120.21087 * 180.44290 * 19 18 17 21 21 C 1.38285 * 119.95960 * 359.96382 * 20 19 18 22 22 C 1.38105 * 119.98458 * 359.92692 * 21 20 19 23 23 C 1.38375 * 121.80599 * 17.25933 * 18 17 16 24 24 C 1.50767 * 121.40161 * 359.47925 * 23 18 17 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08999 * 109.68396 * 304.13276 * 16 14 12 31 31 H 1.08993 * 109.68843 * 64.69871 * 16 14 12 32 32 H 1.07999 * 119.89451 * 0.39944 * 19 18 17 33 33 H 1.07998 * 120.01632 * 179.97438 * 20 19 18 34 34 H 1.07991 * 120.00631 * 179.97438 * 21 20 19 35 35 H 1.07998 * 119.84234 * 180.02562 * 22 21 20 36 36 H 1.09002 * 109.43945 * 257.76231 * 24 23 18 37 37 H 1.09005 * 109.40130 * 137.87679 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 8 5.4735 -2.6366 0.0175 12 6 6.0829 -3.8326 0.0219 13 8 5.4248 -4.8459 0.0208 14 6 7.5878 -3.9115 0.0284 15 1 7.9857 -3.4112 -0.8545 16 6 8.1353 -3.2406 1.2947 17 8 9.5618 -3.2393 1.2226 18 6 10.1828 -4.4071 0.9130 19 6 11.5425 -4.5278 1.1828 20 6 12.2106 -5.6949 0.8743 21 6 11.5279 -6.7492 0.2959 22 6 10.1779 -6.6338 0.0288 23 6 9.5017 -5.4648 0.3366 24 6 8.0276 -5.3776 0.0327 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 7.7698 -2.2155 1.3544 31 1 7.8127 -3.7978 2.1742 32 1 12.0768 -3.7050 1.6344 33 1 13.2661 -5.7850 1.0846 34 1 12.0502 -7.6629 0.0537 35 1 9.6469 -7.4587 -0.4226 36 1 7.4676 -5.9221 0.7931 37 1 7.8329 -5.8176 -0.9455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105389673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:34 Heat of formation + Delta-G solvation = -130.209524 kcal Electronic energy + Delta-G solvation = -20448.336431 eV Core-core repulsion = 17154.664597 eV Total energy + Delta-G solvation = -3293.671834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.20041 -41.13318 -38.47903 -37.93680 -35.48828 -35.34773 -32.88757 -31.85259 -31.19849 -27.56883 -26.80012 -25.64261 -23.58317 -22.84953 -22.34276 -20.85233 -19.36393 -18.91674 -18.62316 -17.86995 -17.54546 -17.02111 -16.57552 -16.26936 -15.93600 -15.62794 -15.07966 -14.91865 -14.75915 -14.55749 -14.29372 -14.24745 -13.91232 -13.32364 -13.20329 -12.75925 -12.59091 -12.50880 -12.45642 -12.21275 -11.93899 -11.82877 -11.72622 -11.57150 -11.47274 -11.38556 -10.82085 -9.75776 -9.16959 -8.35302 -6.43701 0.34218 0.45329 0.98619 1.38407 1.39818 1.50343 1.52802 2.23471 2.33753 2.79536 2.99822 3.23965 3.40295 3.53757 3.79050 3.87218 4.00242 4.14937 4.16429 4.26726 4.30540 4.41842 4.50464 4.58403 4.60869 4.65756 4.80110 4.86914 5.01611 5.08459 5.27604 5.33068 5.44777 5.50540 5.51536 5.60116 5.84393 6.14209 6.38411 6.57470 6.62824 7.21546 8.80764 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041431 B = 0.003189 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.659935 B = 8777.669090 C = 9342.205853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.543 4.543 8 H 0.035 0.965 9 C -0.004 4.004 10 C 0.093 3.907 11 O -0.356 6.356 12 C 0.469 3.531 13 O -0.532 6.532 14 C -0.110 4.110 15 H 0.136 0.864 16 C 0.075 3.925 17 O -0.316 6.316 18 C 0.102 3.898 19 C -0.158 4.158 20 C -0.087 4.087 21 C -0.151 4.151 22 C -0.091 4.091 23 C -0.168 4.168 24 C -0.060 4.060 25 H 0.270 0.730 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.470 -10.177 1.413 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.581 4.581 8 H 0.053 0.947 9 C -0.042 4.042 10 C 0.019 3.981 11 O -0.272 6.272 12 C 0.312 3.688 13 O -0.421 6.421 14 C -0.130 4.130 15 H 0.153 0.847 16 C -0.001 4.001 17 O -0.230 6.230 18 C 0.057 3.943 19 C -0.176 4.176 20 C -0.105 4.105 21 C -0.169 4.169 22 C -0.109 4.109 23 C -0.169 4.169 24 C -0.097 4.097 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 27.154 -10.168 1.459 29.032 hybrid contribution -1.032 0.381 -0.144 1.110 sum 26.121 -9.787 1.315 27.926 Atomic orbital electron populations 1.70042 1.08371 1.28638 1.51367 1.25963 0.95659 1.03616 0.93428 0.85604 0.79606 0.77642 0.79517 1.18872 1.20729 1.16504 1.21120 0.90779 0.93763 1.52427 0.94670 1.19472 0.94090 0.91964 0.98627 1.23002 0.73807 0.99914 1.01344 1.86465 1.24674 1.33092 1.82973 1.23716 0.92015 0.81260 0.71785 1.90655 1.67875 1.37258 1.46308 1.21735 0.86617 1.00715 1.03890 0.84653 1.22986 0.77891 1.04246 0.94942 1.86052 1.20836 1.30511 1.85570 1.19077 0.93126 0.85530 0.96534 1.20887 0.91640 1.00427 1.04678 1.21324 1.01125 0.91697 0.96365 1.21396 0.94094 1.00368 1.01028 1.21175 0.95141 0.96230 0.98326 1.19837 0.95762 0.96047 1.05258 1.20345 0.91670 0.93172 1.04505 0.92056 0.94699 0.94402 0.92169 0.92320 0.84870 0.90668 0.84230 0.82618 0.83244 0.84213 0.89890 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 2 C 0.01 0.65 5.47 84.66 0.46 1.12 16 3 Si 0.95 42.86 27.47 68.60 1.88 44.74 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 7 C -0.54 -31.02 9.66 25.60 0.25 -30.77 16 8 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 9 C 0.00 -0.19 4.42 29.85 0.13 -0.06 16 10 C 0.09 3.82 5.40 71.98 0.39 4.21 16 11 O -0.36 -12.31 10.11 -51.41 -0.52 -12.83 16 12 C 0.47 14.39 7.25 71.24 0.52 14.91 16 13 O -0.53 -19.31 15.54 21.97 0.34 -18.97 16 14 C -0.11 -2.50 2.86 -11.38 -0.03 -2.53 16 15 H 0.14 2.73 8.14 -2.38 -0.02 2.71 16 16 C 0.07 1.56 6.28 72.12 0.45 2.02 16 17 O -0.32 -7.06 10.27 -91.75 -0.94 -8.00 16 18 C 0.10 2.15 6.47 22.52 0.15 2.30 16 19 C -0.16 -2.73 9.94 22.43 0.22 -2.50 16 20 C -0.09 -1.15 10.04 22.22 0.22 -0.93 16 21 C -0.15 -1.98 10.04 22.25 0.22 -1.76 16 22 C -0.09 -1.47 9.67 22.30 0.22 -1.25 16 23 C -0.17 -3.36 5.75 -19.75 -0.11 -3.47 16 24 C -0.06 -1.26 4.67 29.89 0.14 -1.12 16 25 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 26 H 0.03 1.55 7.58 -2.38 -0.02 1.53 16 27 H 0.04 1.69 7.19 -2.39 -0.02 1.67 16 28 H 0.06 2.53 8.13 -2.38 -0.02 2.51 16 29 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 30 H 0.13 2.57 8.07 -2.39 -0.02 2.55 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.15 1.16 8.06 -2.92 -0.02 1.13 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.08 1.89 7.69 -2.39 -0.02 1.87 16 37 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -68.38 315.79 5.29 -63.08 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.01 Total: 9.91 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 3.23 Total: -19.84 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.30 Total: -58.09 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.12 Total: -39.80 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -68.38 5.29 -63.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105389673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.126 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds