Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37998 * 119.95425 * 2 1 4 4 C 1.39297 * 119.90399 * 180.02562 * 3 2 1 5 5 C 1.48453 * 120.08909 * 179.97438 * 4 3 2 6 6 N 1.34052 * 126.67657 * 359.68081 * 5 4 3 7 7 N 1.28986 * 107.27035 * 179.83876 * 6 5 4 8 8 N 1.28727 * 108.94135 * 0.43682 * 7 6 5 9 9 C 1.46509 * 125.33949 * 179.72563 * 8 7 6 10 10 C 1.52997 * 109.47139 * 269.99581 * 9 8 7 11 11 C 1.50696 * 109.47369 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99763 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00195 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99569 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99856 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47574 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47044 * 119.99988 * 15 13 11 18 18 H 1.48501 * 109.47307 * 239.99805 * 15 13 11 19 19 N 1.28875 * 109.32142 * 359.71991 * 8 7 6 20 20 C 1.39331 * 119.82218 * 359.97438 * 4 3 2 21 21 C 1.37958 * 119.90278 * 0.02791 * 20 4 3 22 22 C 1.38525 * 119.95230 * 180.02562 * 2 1 3 23 23 F 1.35098 * 119.90718 * 359.72394 * 22 2 1 24 24 H 1.09002 * 109.47372 * 269.97822 * 1 2 3 25 25 H 1.08998 * 109.47046 * 29.97581 * 1 2 3 26 26 H 1.09004 * 109.47556 * 149.97583 * 1 2 3 27 27 H 1.08000 * 120.04794 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46885 * 29.99872 * 9 8 7 29 29 H 1.09000 * 109.47045 * 149.99718 * 9 8 7 30 30 H 1.08999 * 109.47326 * 300.00681 * 10 9 8 31 31 H 1.09002 * 109.46808 * 59.99651 * 10 9 8 32 32 H 0.97001 * 119.99111 * 179.97438 * 14 13 11 33 33 H 1.07997 * 120.05026 * 179.97438 * 20 4 3 34 34 H 1.08008 * 119.95277 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1956 0.0000 4 6 3.5890 1.1944 -0.0005 5 6 4.3344 2.4783 -0.0011 6 7 3.8066 3.7105 -0.0072 7 7 4.7881 4.5474 -0.0019 8 7 5.8961 3.8921 -0.0021 9 6 7.2339 4.4894 -0.0028 10 6 7.6991 4.6968 -1.4455 11 6 9.0749 5.3117 -1.4462 12 1 9.5683 5.5321 -0.5111 13 6 9.7037 5.5930 -2.6406 14 7 9.1026 5.3251 -3.7792 15 14 11.4094 6.3545 -2.6413 16 1 11.8625 6.5555 -1.2415 17 1 12.3553 5.4493 -3.3420 18 1 11.3667 7.6636 -3.3411 19 7 5.6439 2.6283 -0.0016 20 6 4.2808 -0.0150 -0.0005 21 6 3.5843 -1.2058 -0.0006 22 6 2.1986 -1.2002 -0.0005 23 9 1.5202 -2.3686 0.0046 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6560 2.1310 0.0004 28 1 7.2030 5.4503 0.5108 29 1 7.9286 3.8249 0.5110 30 1 7.7298 3.7359 -1.9591 31 1 7.0043 5.3612 -1.9592 32 1 9.5449 5.5233 -4.6194 33 1 5.3608 -0.0202 -0.0014 34 1 4.1197 -2.1438 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109342339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = 88.272950 kcal Electronic energy + Delta-G solvation = -19717.729522 eV Core-core repulsion = 16374.656996 eV Total energy + Delta-G solvation = -3343.072526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.09521 -43.88214 -39.27786 -35.45991 -33.61319 -33.24711 -32.57017 -31.18959 -29.60570 -27.22981 -25.97989 -24.26191 -23.24952 -22.38901 -21.15595 -20.93172 -17.75208 -17.48802 -16.74730 -16.56659 -16.31421 -15.86281 -15.54602 -14.63773 -14.37584 -13.81576 -13.66015 -13.56087 -13.51013 -13.28108 -12.84962 -12.75795 -12.35389 -12.12698 -11.88026 -11.64889 -11.21332 -11.14425 -11.03037 -10.63571 -10.59821 -10.43611 -10.39410 -9.72698 -9.52055 -9.10636 -8.61863 -8.46487 -6.25551 -4.32791 0.62246 1.03838 1.70928 2.44725 2.50258 3.18825 3.26963 3.29737 3.55213 3.87506 4.04365 4.26968 4.35854 4.54449 4.70280 4.98227 5.08341 5.11680 5.31000 5.36933 5.45011 5.53060 5.68406 5.73069 5.81428 5.88532 5.97621 6.04693 6.09731 6.20458 6.31099 6.55995 6.65306 7.28081 7.28575 7.67602 7.97721 8.71696 8.72509 9.33575 10.85685 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.035471 B = 0.003118 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.185315 B = 8977.171097 C = 9342.577619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.122 4.122 3 C -0.056 4.056 4 C -0.002 4.002 5 C 0.183 3.817 6 N -0.290 5.290 7 N -0.061 5.061 8 N -0.108 5.108 9 C 0.123 3.877 10 C 0.013 3.987 11 C -0.531 4.531 12 H 0.065 0.935 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.903 3.097 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 N -0.294 5.294 20 C -0.061 4.061 21 C -0.150 4.150 22 C 0.104 3.896 23 F -0.138 7.138 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.145 0.855 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.587 -11.105 8.374 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.123 4.123 3 C -0.076 4.076 4 C -0.006 4.006 5 C -0.096 4.096 6 N -0.161 5.161 7 N -0.053 5.053 8 N -0.022 5.022 9 C 0.005 3.995 10 C -0.026 4.026 11 C -0.570 4.570 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.524 5.524 15 Si 0.730 3.270 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.207 1.207 19 N -0.146 5.146 20 C -0.081 4.081 21 C -0.169 4.169 22 C 0.084 3.916 23 F -0.116 7.116 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.434 -10.393 8.192 18.158 hybrid contribution 0.937 -0.244 -0.235 0.996 sum -11.497 -10.637 7.957 17.568 Atomic orbital electron populations 1.20724 0.89739 1.03535 1.02932 1.19809 0.97242 0.91382 1.03873 1.20955 0.92324 0.97968 0.96339 1.17270 0.91918 0.87673 1.03697 1.23388 0.87134 0.94017 1.05079 1.75916 1.22724 0.98261 1.19158 1.78885 0.88473 1.22303 1.15656 1.50732 1.10613 1.00923 1.39922 1.23108 0.72501 0.98516 1.05360 1.19526 0.97474 0.98882 0.86670 1.20902 1.00233 1.42688 0.93153 0.91713 1.25008 0.98431 0.95261 0.95339 1.69979 1.38102 1.46766 0.97546 0.86367 0.83360 0.78938 0.78365 1.19463 1.20770 1.20739 1.74839 1.16861 1.01488 1.21403 1.21086 1.01098 0.89949 0.96000 1.21036 0.91999 0.99662 1.04206 1.17663 0.90003 0.80925 1.02992 1.91478 1.80223 1.46145 1.93778 0.90701 0.90617 0.91131 0.83704 0.87262 0.87494 0.95113 0.95076 0.92513 0.83758 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.83 36.00 0.35 -0.56 16 2 C -0.12 -1.30 5.88 -104.61 -0.62 -1.92 16 3 C -0.06 -0.67 9.35 -39.28 -0.37 -1.04 16 4 C 0.00 -0.03 5.88 -104.89 -0.62 -0.65 16 5 C 0.18 3.19 7.94 -156.30 -1.24 1.95 16 6 N -0.29 -5.41 12.23 32.15 0.39 -5.02 16 7 N -0.06 -1.21 13.23 60.35 0.80 -0.41 16 8 N -0.11 -2.09 3.99 -10.63 -0.04 -2.13 16 9 C 0.12 2.30 6.53 -4.04 -0.03 2.28 16 10 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 11 C -0.53 -13.65 9.11 -34.44 -0.31 -13.97 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 15 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 N -0.29 -5.50 11.85 32.17 0.38 -5.12 16 20 C -0.06 -0.75 9.70 -39.28 -0.38 -1.13 16 21 C -0.15 -1.59 10.01 -39.56 -0.40 -1.98 16 22 C 0.10 1.14 7.24 -39.35 -0.29 0.86 16 23 F -0.14 -1.51 16.46 2.25 0.04 -1.47 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.07 0.54 7.64 -51.93 -0.40 0.15 16 27 H 0.15 1.65 7.88 -52.49 -0.41 1.24 16 28 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 29 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.14 1.71 7.88 -52.49 -0.41 1.29 16 34 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -29.47 310.44 -5.89 -35.36 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.72 Total: -2.12 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -4.13 Total: -14.39 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 2.27 Total: -37.32 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.47 -5.89 -35.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109342339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.633 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds