Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37998 * 119.95425 * 2 1 4 4 C 1.39297 * 119.90399 * 180.02562 * 3 2 1 5 5 C 1.48453 * 120.08909 * 179.97438 * 4 3 2 6 6 N 1.34052 * 126.67657 * 359.68081 * 5 4 3 7 7 N 1.28986 * 107.27035 * 179.83876 * 6 5 4 8 8 N 1.28727 * 108.94135 * 0.43682 * 7 6 5 9 9 C 1.46509 * 125.33949 * 179.72563 * 8 7 6 10 10 C 1.52997 * 109.47139 * 269.99581 * 9 8 7 11 11 C 1.50696 * 109.47369 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99763 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00195 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99569 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99856 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47574 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47044 * 119.99988 * 15 13 11 18 18 H 1.48501 * 109.47307 * 239.99805 * 15 13 11 19 19 N 1.28875 * 109.32142 * 359.71991 * 8 7 6 20 20 C 1.39331 * 119.82218 * 359.97438 * 4 3 2 21 21 C 1.37958 * 119.90278 * 0.02791 * 20 4 3 22 22 C 1.38525 * 119.95230 * 180.02562 * 2 1 3 23 23 F 1.35098 * 119.90718 * 359.72394 * 22 2 1 24 24 H 1.09002 * 109.47372 * 269.97822 * 1 2 3 25 25 H 1.08998 * 109.47046 * 29.97581 * 1 2 3 26 26 H 1.09004 * 109.47556 * 149.97583 * 1 2 3 27 27 H 1.08000 * 120.04794 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46885 * 29.99872 * 9 8 7 29 29 H 1.09000 * 109.47045 * 149.99718 * 9 8 7 30 30 H 1.08999 * 109.47326 * 300.00681 * 10 9 8 31 31 H 1.09002 * 109.46808 * 59.99651 * 10 9 8 32 32 H 0.97001 * 119.99111 * 179.97438 * 14 13 11 33 33 H 1.07997 * 120.05026 * 179.97438 * 20 4 3 34 34 H 1.08008 * 119.95277 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1956 0.0000 4 6 3.5890 1.1944 -0.0005 5 6 4.3344 2.4783 -0.0011 6 7 3.8066 3.7105 -0.0072 7 7 4.7881 4.5474 -0.0019 8 7 5.8961 3.8921 -0.0021 9 6 7.2339 4.4894 -0.0028 10 6 7.6991 4.6968 -1.4455 11 6 9.0749 5.3117 -1.4462 12 1 9.5683 5.5321 -0.5111 13 6 9.7037 5.5930 -2.6406 14 7 9.1026 5.3251 -3.7792 15 14 11.4094 6.3545 -2.6413 16 1 11.8625 6.5555 -1.2415 17 1 12.3553 5.4493 -3.3420 18 1 11.3667 7.6636 -3.3411 19 7 5.6439 2.6283 -0.0016 20 6 4.2808 -0.0150 -0.0005 21 6 3.5843 -1.2058 -0.0006 22 6 2.1986 -1.2002 -0.0005 23 9 1.5202 -2.3686 0.0046 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6560 2.1310 0.0004 28 1 7.2030 5.4503 0.5108 29 1 7.9286 3.8249 0.5110 30 1 7.7298 3.7359 -1.9591 31 1 7.0043 5.3612 -1.9592 32 1 9.5449 5.5233 -4.6194 33 1 5.3608 -0.0202 -0.0014 34 1 4.1197 -2.1438 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109342339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = 71.950515 kcal Electronic energy + Delta-G solvation = -19718.437316 eV Core-core repulsion = 16374.656996 eV Total energy + Delta-G solvation = -3343.780320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.97181 -45.33256 -40.21075 -37.04803 -35.09646 -34.77278 -33.63172 -32.66857 -30.99757 -28.03980 -27.72867 -25.46988 -24.87520 -23.53963 -22.67580 -22.06038 -19.17748 -18.61352 -18.14375 -18.02500 -17.49609 -16.89085 -16.73137 -16.50773 -15.40548 -15.33641 -14.87431 -14.55143 -14.41985 -14.32303 -14.23646 -13.88237 -13.81739 -13.29608 -13.13475 -12.90008 -12.84539 -12.69612 -12.25608 -12.22472 -12.18225 -11.91821 -11.89747 -11.49009 -11.28274 -10.66846 -9.98608 -9.50935 -8.29266 -6.43315 -0.41966 0.15569 0.22202 0.99386 1.25123 1.43516 1.44886 1.57490 2.38498 2.55387 2.64229 3.07275 3.14390 3.16248 3.69460 3.75363 3.95687 4.11585 4.14581 4.25125 4.33441 4.41972 4.62891 4.66554 4.75937 4.78212 4.88299 4.97075 5.08992 5.18918 5.24449 5.29612 5.32628 5.35073 5.67435 5.76668 5.97071 6.71861 7.26192 7.28325 8.83689 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.035471 B = 0.003118 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.185315 B = 8977.171097 C = 9342.577619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C -0.056 4.056 4 C -0.030 4.030 5 C 0.191 3.809 6 N -0.299 5.299 7 N -0.077 5.077 8 N -0.116 5.116 9 C 0.134 3.866 10 C 0.022 3.978 11 C -0.540 4.540 12 H 0.085 0.915 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.975 3.025 16 H -0.252 1.252 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.309 5.309 20 C -0.064 4.064 21 C -0.143 4.143 22 C 0.104 3.896 23 F -0.135 7.135 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.148 0.852 28 H 0.132 0.868 29 H 0.130 0.870 30 H -0.002 1.002 31 H -0.003 1.003 32 H 0.266 0.734 33 H 0.145 0.855 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.597 -11.960 9.651 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.120 4.120 3 C -0.076 4.076 4 C -0.033 4.033 5 C -0.088 4.088 6 N -0.169 5.169 7 N -0.069 5.069 8 N -0.030 5.030 9 C 0.017 3.983 10 C -0.017 4.017 11 C -0.578 4.578 12 H 0.103 0.897 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.799 3.201 16 H -0.175 1.175 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.160 5.160 20 C -0.084 4.084 21 C -0.161 4.161 22 C 0.084 3.916 23 F -0.113 7.113 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.166 0.834 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.074 0.926 33 H 0.163 0.837 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.451 -11.251 9.493 19.280 hybrid contribution 0.798 -0.102 -0.637 1.026 sum -11.652 -11.353 8.856 18.523 Atomic orbital electron populations 1.20818 0.87766 1.04367 1.04039 1.20051 0.98652 0.90672 1.02584 1.21009 0.91579 0.98788 0.96218 1.17436 0.92687 0.86791 1.06419 1.24000 0.86871 0.94791 1.03122 1.75884 1.22539 0.98789 1.19678 1.78843 0.88893 1.22964 1.16218 1.50681 1.10517 1.01194 1.40585 1.22914 0.72895 1.00430 1.02048 1.19268 0.96701 0.96193 0.89513 1.21407 1.00790 1.41706 0.93904 0.89702 1.26026 1.02756 0.95847 0.95004 1.70128 1.40174 1.48587 0.98348 0.85240 0.78075 0.77616 0.79168 1.17488 1.20722 1.20768 1.74829 1.17659 1.01195 1.22313 1.21126 1.01237 0.89931 0.96080 1.21246 0.92007 1.00002 1.02853 1.17804 0.90267 0.81099 1.02395 1.91491 1.80173 1.45975 1.93667 0.89362 0.89620 0.90516 0.83398 0.85045 0.85223 0.98337 0.98435 0.92551 0.83746 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.83 71.23 0.70 -0.86 16 2 C -0.12 -2.31 5.88 -19.85 -0.12 -2.42 16 3 C -0.06 -1.29 9.35 22.47 0.21 -1.08 16 4 C -0.03 -0.82 5.88 -20.04 -0.12 -0.94 16 5 C 0.19 6.69 7.94 137.38 1.09 7.78 16 6 N -0.30 -11.22 12.23 -52.18 -0.64 -11.86 16 7 N -0.08 -3.07 13.23 37.02 0.49 -2.58 16 8 N -0.12 -4.51 3.99 -187.54 -0.75 -5.26 16 9 C 0.13 5.00 6.53 86.38 0.56 5.56 16 10 C 0.02 1.09 5.30 29.85 0.16 1.25 16 11 C -0.54 -27.65 9.11 25.60 0.23 -27.42 16 12 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 13 C 0.00 0.14 5.46 84.66 0.46 0.60 16 14 N -0.93 -54.76 13.29 21.45 0.28 -54.47 16 15 Si 0.98 41.30 29.54 68.60 2.03 43.33 16 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 N -0.31 -11.61 11.85 -52.13 -0.62 -12.23 16 20 C -0.06 -1.49 9.70 22.47 0.22 -1.27 16 21 C -0.14 -2.72 10.01 22.28 0.22 -2.50 16 22 C 0.10 2.06 7.24 22.42 0.16 2.23 16 23 F -0.13 -2.60 16.46 44.97 0.74 -1.86 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 26 H 0.08 0.98 7.64 -2.38 -0.02 0.96 16 27 H 0.15 3.26 7.88 -2.91 -0.02 3.24 16 28 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 29 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 30 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.14 3.34 7.88 -2.91 -0.02 3.31 16 34 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -64.10 310.44 6.45 -57.65 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.12 Total: 6.37 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 3.79 Total: -19.08 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -1.23 Total: -86.41 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.74 Total: -1.86 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -64.10 6.45 -57.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109342339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.605 kcal (2) G-P(sol) polarization free energy of solvation -64.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds