Wall clock time and date at job start Mon Mar 30 2020 01:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31004 * 119.99925 * 2 1 4 4 C 1.50705 * 119.99730 * 180.02562 * 3 2 1 5 5 O 1.45201 * 109.46788 * 135.00465 * 4 3 2 6 6 C 1.34227 * 116.99964 * 180.02562 * 5 4 3 7 7 O 1.20827 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00262 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.47673 * 179.97438 * 8 6 5 10 10 C 1.38303 * 119.93132 * 269.72771 * 9 8 6 11 11 C 1.38100 * 120.07044 * 179.72054 * 10 9 8 12 12 C 1.38881 * 119.92840 * 0.56593 * 11 10 9 13 13 O 1.35752 * 120.07025 * 179.68049 * 12 11 10 14 14 C 1.34824 * 117.00242 * 174.49355 * 13 12 11 15 15 H 1.08003 * 120.00166 * 5.05162 * 14 13 12 16 16 C 1.38657 * 120.00487 * 185.06053 * 14 13 12 17 17 N 1.31559 * 119.99261 * 359.97438 * 16 14 13 18 18 Si 1.86789 * 120.00375 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47173 * 59.99983 * 18 16 14 20 20 H 1.48501 * 109.47410 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47498 * 299.99685 * 18 16 14 22 22 C 1.38878 * 119.86370 * 359.71150 * 12 11 10 23 23 C 1.38099 * 119.93063 * 359.97438 * 22 12 11 24 24 H 1.08996 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46958 * 299.99901 * 1 2 3 26 26 H 1.08995 * 109.46983 * 59.99639 * 1 2 3 27 27 H 1.08001 * 120.00524 * 180.28029 * 2 1 3 28 28 H 1.07998 * 120.00145 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47247 * 254.99764 * 4 3 2 30 30 H 1.08994 * 109.47181 * 15.00285 * 4 3 2 31 31 H 1.09005 * 109.47291 * 299.99876 * 8 6 5 32 32 H 1.08997 * 109.47549 * 59.99379 * 8 6 5 33 33 H 1.08006 * 119.96545 * 359.97438 * 10 9 8 34 34 H 1.08002 * 120.03639 * 180.27215 * 11 10 9 35 35 H 0.97006 * 119.99571 * 180.02562 * 17 16 14 36 36 H 1.07996 * 120.03461 * 179.97438 * 22 12 11 37 37 H 1.07995 * 119.96888 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 -0.0006 5 8 4.1526 2.1028 -0.9685 6 6 5.4832 2.2268 -1.0938 7 8 6.2196 1.5491 -0.4167 8 6 6.0589 3.2113 -2.0788 9 6 7.5638 3.1557 -2.0237 10 6 8.2535 3.9819 -1.1551 11 6 9.6323 3.9292 -1.0980 12 6 10.3270 3.0537 -1.9225 13 8 11.6827 3.0041 -1.8735 14 6 12.2878 2.0547 -2.6152 15 1 11.7032 1.4305 -3.2748 16 6 13.6607 1.8794 -2.5312 17 7 14.3729 2.6399 -1.7280 18 14 14.4989 0.5635 -3.5583 19 1 14.2591 0.8326 -4.9989 20 1 15.9591 0.5803 -3.2885 21 1 13.9450 -0.7682 -3.2046 22 6 9.6318 2.2294 -2.7978 23 6 8.2527 2.2822 -2.8455 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 2.0471 -0.9353 -0.0046 28 1 1.6220 2.0698 0.0004 29 1 4.0328 1.4003 0.9920 30 1 4.0322 0.1420 -0.2670 31 1 5.7222 2.9584 -3.0842 32 1 5.7234 4.2170 -1.8257 33 1 7.7130 4.6661 -0.5177 34 1 10.1702 4.5715 -0.4164 35 1 15.3334 2.5176 -1.6695 36 1 10.1692 1.5479 -3.4405 37 1 7.7115 1.6412 -3.5256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111674315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:51 Heat of formation + Delta-G solvation = -98.008290 kcal Electronic energy + Delta-G solvation = -19754.762447 eV Core-core repulsion = 16462.486963 eV Total energy + Delta-G solvation = -3292.275484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58242 -40.68006 -38.56438 -37.61822 -35.97111 -34.42480 -33.04247 -31.80980 -30.48805 -28.40623 -27.13379 -25.25490 -23.66593 -22.92561 -21.55265 -20.51535 -19.86353 -18.86399 -18.62046 -17.63076 -17.43629 -16.42073 -16.35928 -15.95556 -15.55652 -15.38069 -15.17311 -14.95571 -14.50888 -14.31349 -14.14092 -13.87876 -13.64269 -13.54897 -12.96948 -12.88158 -12.63059 -12.49883 -12.34735 -12.29403 -12.15047 -12.08662 -11.85566 -11.49621 -11.19964 -10.79561 -10.04174 -9.79168 -8.96080 -8.48277 -6.16649 0.55721 0.59341 1.01519 1.25985 1.33878 1.44704 1.50500 1.97078 2.17221 2.83070 3.15548 3.49707 3.70763 3.81505 4.00465 4.02972 4.08899 4.17215 4.30756 4.40354 4.43734 4.56336 4.60480 4.68427 4.78025 4.83472 4.85959 5.04522 5.12817 5.16170 5.27063 5.44523 5.53728 5.65990 5.69496 5.72466 5.76277 6.01336 6.19760 6.81718 6.95968 7.76322 8.74681 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.034156 B = 0.002826 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.561410 B = 9904.847892 C =10328.824377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 C -0.177 4.177 4 C 0.092 3.908 5 O -0.354 6.354 6 C 0.461 3.539 7 O -0.539 6.539 8 C -0.048 4.048 9 C -0.159 4.159 10 C -0.053 4.053 11 C -0.207 4.207 12 C 0.115 3.885 13 O -0.231 6.231 14 C -0.415 4.415 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.920 5.920 18 Si 1.020 2.980 19 H -0.255 1.255 20 H -0.271 1.271 21 H -0.260 1.260 22 C -0.245 4.245 23 C -0.056 4.056 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.114 0.886 35 H 0.273 0.727 36 H 0.120 0.880 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.278 -2.461 -0.695 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C -0.195 4.195 4 C 0.019 3.981 5 O -0.271 6.271 6 C 0.305 3.695 7 O -0.428 6.428 8 C -0.085 4.085 9 C -0.160 4.160 10 C -0.071 4.071 11 C -0.226 4.226 12 C 0.065 3.935 13 O -0.138 6.138 14 C -0.492 4.492 15 H 0.119 0.881 16 C -0.222 4.222 17 N -0.558 5.558 18 Si 0.839 3.161 19 H -0.179 1.179 20 H -0.195 1.195 21 H -0.184 1.184 22 C -0.264 4.264 23 C -0.074 4.074 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.719 -2.516 -0.285 25.843 hybrid contribution 1.184 -0.662 0.061 1.358 sum -24.535 -3.178 -0.224 24.741 Atomic orbital electron populations 1.20915 0.90888 1.03550 1.02940 1.23144 0.97797 0.97518 0.96820 1.22478 0.92248 1.00052 1.04703 1.22064 0.93374 0.91232 0.91457 1.86518 1.24170 1.58245 1.58163 1.24428 0.80149 0.82451 0.82457 1.90721 1.61212 1.45409 1.45477 1.20240 0.89632 0.99364 0.99219 1.19206 0.94474 1.01054 1.01265 1.20915 0.91770 0.97878 0.96541 1.20452 0.95051 1.03715 1.03374 1.19979 0.84123 0.94970 0.94437 1.83938 1.15225 1.51546 1.63060 1.21792 0.91734 1.13380 1.22244 0.88149 1.26630 0.95826 1.00884 0.98828 1.70185 1.07539 1.40084 1.37997 0.84632 0.77000 0.76546 0.77936 1.17904 1.19502 1.18406 1.21237 0.95811 1.05012 1.04351 1.20968 0.92345 0.96353 0.97708 0.90842 0.90653 0.90666 0.86943 0.85292 0.90883 0.91440 0.84249 0.83936 0.83198 0.86763 0.91797 0.86260 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 10.17 71.23 0.72 -0.32 16 2 C -0.13 -1.68 9.86 25.64 0.25 -1.43 16 3 C -0.18 -2.65 9.54 25.64 0.24 -2.41 16 4 C 0.09 1.85 5.88 71.24 0.42 2.27 16 5 O -0.35 -7.87 10.20 -51.39 -0.52 -8.39 16 6 C 0.46 11.99 7.95 71.23 0.57 12.55 16 7 O -0.54 -19.02 15.78 21.96 0.35 -18.67 16 8 C -0.05 -0.99 5.94 29.10 0.17 -0.82 16 9 C -0.16 -4.99 4.38 -19.83 -0.09 -5.08 16 10 C -0.05 -1.83 9.69 22.25 0.22 -1.61 16 11 C -0.21 -9.15 9.99 22.39 0.22 -8.92 16 12 C 0.12 5.97 6.65 22.58 0.15 6.12 16 13 O -0.23 -14.34 9.76 -22.70 -0.22 -14.56 16 14 C -0.42 -24.84 9.49 67.92 0.64 -24.20 16 15 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 16 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 17 N -0.92 -57.52 13.67 21.61 0.30 -57.23 16 18 Si 1.02 43.71 29.55 68.60 2.03 45.74 16 19 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 C -0.24 -11.07 9.17 22.39 0.21 -10.87 16 23 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 24 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.11 1.35 7.90 -2.91 -0.02 1.32 16 28 H 0.13 1.68 8.05 -2.91 -0.02 1.65 16 29 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 30 H 0.07 1.41 7.85 -2.39 -0.02 1.40 16 31 H 0.14 2.07 8.09 -2.38 -0.02 2.05 16 32 H 0.14 2.03 8.08 -2.39 -0.02 2.01 16 33 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 35 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 36 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 37 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -77.55 330.02 7.40 -70.15 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 1.07 Total: 20.39 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 4.41 Total: -37.43 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.30 Total: -57.23 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.40 Total: -41.63 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -77.55 7.40 -70.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111674315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.860 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds