Wall clock time and date at job start Mon Mar 30 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99839 * 2 1 4 4 C 1.52998 * 109.47198 * 124.99606 * 3 2 1 5 5 O 1.45203 * 109.47097 * 179.97438 * 4 3 2 6 6 C 1.34225 * 117.00065 * 179.97438 * 5 4 3 7 7 O 1.20830 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00089 * 180.02562 * 6 5 4 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47264 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47375 * 119.99795 * 18 16 14 21 21 H 1.48506 * 109.47301 * 239.99793 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.07992 * 120.00342 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99598 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00708 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46803 * 4.99397 * 3 2 1 28 28 H 1.09005 * 109.47166 * 245.00056 * 3 2 1 29 29 H 1.09005 * 109.47055 * 60.00460 * 4 3 2 30 30 H 1.08992 * 109.47430 * 299.99973 * 4 3 2 31 31 H 1.08998 * 109.46621 * 60.00590 * 8 6 5 32 32 H 1.08996 * 109.47266 * 300.00254 * 8 6 5 33 33 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 34 34 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 35 35 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 37 37 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 8 3.7613 2.5905 1.1813 6 6 4.6597 2.7755 2.1613 7 8 4.8337 1.9152 2.9917 8 6 5.4513 4.0563 2.2258 9 6 6.3828 4.0119 3.4096 10 6 7.6596 3.5007 3.2643 11 6 8.5158 3.4591 4.3470 12 6 8.0932 3.9309 5.5831 13 8 8.9326 3.8918 6.6492 14 6 10.1988 3.4908 6.4169 15 1 10.4830 3.1409 5.4356 16 6 11.1360 3.5274 7.4382 17 7 10.7899 3.9540 8.6336 18 14 12.8903 2.9725 7.1163 19 1 13.0215 2.5419 5.7012 20 1 13.8219 4.0983 7.3800 21 1 13.2220 1.8353 8.0120 22 6 6.8083 4.4378 5.7274 23 6 5.9588 4.4818 4.6393 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4027 -0.9314 29 1 3.7400 0.5067 1.0921 30 1 2.4772 1.2358 2.1130 31 1 4.7693 4.8999 2.3312 32 1 6.0324 4.1708 1.3108 33 1 7.9878 3.1344 2.3028 34 1 9.5128 3.0603 4.2327 35 1 11.4454 3.9793 9.3481 36 1 6.4753 4.8012 6.6883 37 1 4.9610 4.8800 4.7498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111946777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:54 Heat of formation + Delta-G solvation = -77.788006 kcal Electronic energy + Delta-G solvation = -19803.140527 eV Core-core repulsion = 16511.741861 eV Total energy + Delta-G solvation = -3291.398666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.40586 -38.97612 -37.12667 -36.30340 -35.24005 -32.52070 -31.56072 -30.17893 -29.94121 -26.89701 -25.22370 -23.62586 -21.99579 -21.53159 -20.38322 -19.91547 -17.99978 -17.51340 -17.01511 -16.72130 -16.20722 -15.47617 -14.79757 -14.62439 -14.36548 -14.16677 -13.72868 -13.53749 -13.49454 -13.11989 -12.72962 -12.60531 -12.14994 -11.98938 -11.74447 -11.53008 -11.50145 -11.29028 -10.90605 -10.78842 -10.62271 -10.60487 -10.42273 -10.26107 -9.77155 -9.33530 -8.83885 -8.17122 -7.20155 -6.45589 -4.04028 1.80198 2.14959 2.23833 2.39652 2.89251 3.13379 3.13946 3.19624 3.96554 4.44774 4.57350 4.65401 4.77693 4.90554 4.99282 5.10147 5.15244 5.22203 5.29147 5.33663 5.43273 5.55505 5.62962 5.70686 5.72348 5.83326 6.20503 6.21096 6.32556 6.40086 6.48791 6.69525 6.89916 7.04541 7.22093 7.34200 7.43651 7.81282 7.93732 7.99731 9.00065 9.70016 10.72423 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.037499 B = 0.002779 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.511561 B =10074.809795 C =10279.173590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.155 4.155 3 C -0.093 4.093 4 C 0.069 3.931 5 O -0.366 6.366 6 C 0.454 3.546 7 O -0.491 6.491 8 C -0.050 4.050 9 C -0.184 4.184 10 C -0.053 4.053 11 C -0.233 4.233 12 C 0.159 3.841 13 O -0.176 6.176 14 C -0.391 4.391 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.862 5.862 18 Si 0.942 3.058 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.192 4.192 23 C -0.056 4.056 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.270 0.730 36 H 0.118 0.882 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.445 -2.735 -16.606 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.173 4.173 3 C -0.130 4.130 4 C -0.005 4.005 5 O -0.284 6.284 6 C 0.296 3.704 7 O -0.377 6.377 8 C -0.087 4.087 9 C -0.185 4.185 10 C -0.072 4.072 11 C -0.252 4.252 12 C 0.105 3.895 13 O -0.079 6.079 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.496 5.496 18 Si 0.767 3.233 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.211 4.211 23 C -0.075 4.075 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.130 0.870 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.318 -2.944 -15.872 21.577 hybrid contribution 0.843 -0.585 -0.099 1.031 sum -13.475 -3.530 -15.971 21.192 Atomic orbital electron populations 1.23916 0.95819 1.02167 1.00284 1.22775 0.96050 0.97940 1.00579 1.20692 0.97798 0.96277 0.98223 1.22917 0.93952 0.84279 0.99322 1.86483 1.50755 1.40189 1.50999 1.24223 0.77793 0.90123 0.78224 1.90708 1.63898 1.44340 1.38717 1.20093 0.96702 0.92262 0.99664 1.18645 0.95058 1.10877 0.93884 1.20533 0.92823 0.96292 0.97506 1.21112 1.01643 1.09339 0.93151 1.19409 0.90785 0.91970 0.87333 1.83977 1.20870 1.74080 1.28995 1.21394 0.82964 1.43630 0.98756 0.88952 1.25310 0.99846 0.96809 0.94623 1.70048 1.35133 1.43020 1.01439 0.85631 0.80440 0.78447 0.78814 1.19086 1.20120 1.20138 1.20160 0.93139 1.08538 0.99285 1.20425 0.97650 0.97745 0.91661 0.88347 0.88162 0.86957 0.90355 0.89799 0.91219 0.91216 0.87777 0.87817 0.87632 0.85446 0.92042 0.86397 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 14.32 29.02 0.42 -0.77 16 2 C -0.16 -1.11 9.52 -36.02 -0.34 -1.45 16 3 C -0.09 -0.72 6.04 -27.88 -0.17 -0.89 16 4 C 0.07 0.73 5.45 37.16 0.20 0.93 16 5 O -0.37 -4.53 10.22 -39.24 -0.40 -4.93 16 6 C 0.45 6.64 7.95 36.01 0.29 6.93 16 7 O -0.49 -9.12 15.78 -18.75 -0.30 -9.41 16 8 C -0.05 -0.64 5.94 -29.04 -0.17 -0.81 16 9 C -0.18 -3.19 4.38 -104.58 -0.46 -3.64 16 10 C -0.05 -1.00 9.69 -39.61 -0.38 -1.39 16 11 C -0.23 -5.19 9.17 -39.39 -0.36 -5.56 16 12 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 13 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 14 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 15 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 18 Si 0.94 20.67 29.55 -169.99 -5.02 15.64 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 23 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 24 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 25 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 26 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 27 H 0.08 0.58 7.79 -51.93 -0.40 0.17 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 32 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -32.84 329.72 -6.56 -39.40 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.74 Total: 2.85 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -1.82 Total: -18.74 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.76 Total: -24.68 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.70 Total: -19.44 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.84 -6.56 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111946777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.392 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds