Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99839 * 2 1 4 4 C 1.52998 * 109.47198 * 124.99606 * 3 2 1 5 5 O 1.45203 * 109.47097 * 179.97438 * 4 3 2 6 6 C 1.34225 * 117.00065 * 179.97438 * 5 4 3 7 7 O 1.20830 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00089 * 180.02562 * 6 5 4 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47264 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47375 * 119.99795 * 18 16 14 21 21 H 1.48506 * 109.47301 * 239.99793 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.07992 * 120.00342 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99598 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00708 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46803 * 4.99397 * 3 2 1 28 28 H 1.09005 * 109.47166 * 245.00056 * 3 2 1 29 29 H 1.09005 * 109.47055 * 60.00460 * 4 3 2 30 30 H 1.08992 * 109.47430 * 299.99973 * 4 3 2 31 31 H 1.08998 * 109.46621 * 60.00590 * 8 6 5 32 32 H 1.08996 * 109.47266 * 300.00254 * 8 6 5 33 33 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 34 34 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 35 35 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 37 37 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 8 3.7613 2.5905 1.1813 6 6 4.6597 2.7755 2.1613 7 8 4.8337 1.9152 2.9917 8 6 5.4513 4.0563 2.2258 9 6 6.3828 4.0119 3.4096 10 6 7.6596 3.5007 3.2643 11 6 8.5158 3.4591 4.3470 12 6 8.0932 3.9309 5.5831 13 8 8.9326 3.8918 6.6492 14 6 10.1988 3.4908 6.4169 15 1 10.4830 3.1409 5.4356 16 6 11.1360 3.5274 7.4382 17 7 10.7899 3.9540 8.6336 18 14 12.8903 2.9725 7.1163 19 1 13.0215 2.5419 5.7012 20 1 13.8219 4.0983 7.3800 21 1 13.2220 1.8353 8.0120 22 6 6.8083 4.4378 5.7274 23 6 5.9588 4.4818 4.6393 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4027 -0.9314 29 1 3.7400 0.5067 1.0921 30 1 2.4772 1.2358 2.1130 31 1 4.7693 4.8999 2.3312 32 1 6.0324 4.1708 1.3108 33 1 7.9878 3.1344 2.3028 34 1 9.5128 3.0603 4.2327 35 1 11.4454 3.9793 9.3481 36 1 6.4753 4.8012 6.6883 37 1 4.9610 4.8800 4.7498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111946777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = -96.825994 kcal Electronic energy + Delta-G solvation = -19803.966076 eV Core-core repulsion = 16511.741861 eV Total energy + Delta-G solvation = -3292.224215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57192 -40.67845 -38.56546 -37.61816 -35.94863 -34.42463 -33.04373 -31.80860 -30.72254 -28.39741 -27.11399 -24.48427 -23.66502 -22.83407 -21.58247 -20.64119 -19.86570 -18.86953 -18.59990 -17.71800 -17.32826 -16.47227 -16.35582 -16.06439 -15.93482 -15.51511 -15.22532 -14.95773 -14.56410 -14.41279 -14.21306 -13.85770 -13.61244 -13.08455 -12.96825 -12.87577 -12.58640 -12.52058 -12.31346 -12.29236 -12.09892 -12.04822 -11.54832 -11.44892 -11.19478 -10.81021 -10.30581 -9.79024 -8.95955 -8.48558 -6.16785 0.57282 0.59469 1.26860 1.27627 1.34315 1.42500 1.52998 1.86766 2.16912 2.82686 3.15789 3.49363 3.74425 3.87436 3.97192 4.02292 4.03934 4.16691 4.20273 4.37274 4.43859 4.47832 4.57028 4.69142 4.78230 4.82271 4.95752 5.04696 5.09212 5.13574 5.27356 5.47069 5.53994 5.69649 5.71966 5.72634 5.81960 6.01659 6.19984 6.83019 6.95997 7.76503 8.74940 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.037499 B = 0.002779 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.511561 B =10074.809795 C =10279.173590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.171 4.171 3 C -0.084 4.084 4 C 0.065 3.935 5 O -0.356 6.356 6 C 0.461 3.539 7 O -0.540 6.540 8 C -0.048 4.048 9 C -0.159 4.159 10 C -0.056 4.056 11 C -0.245 4.245 12 C 0.116 3.884 13 O -0.232 6.232 14 C -0.414 4.414 15 H 0.102 0.898 16 C -0.025 4.025 17 N -0.920 5.920 18 Si 1.021 2.979 19 H -0.251 1.251 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.207 4.207 23 C -0.053 4.053 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.273 0.727 36 H 0.114 0.886 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.913 -2.671 -20.141 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.189 4.189 3 C -0.121 4.121 4 C -0.009 4.009 5 O -0.273 6.273 6 C 0.305 3.695 7 O -0.429 6.429 8 C -0.085 4.085 9 C -0.160 4.160 10 C -0.074 4.074 11 C -0.264 4.264 12 C 0.065 3.935 13 O -0.138 6.138 14 C -0.490 4.490 15 H 0.119 0.881 16 C -0.222 4.222 17 N -0.559 5.559 18 Si 0.840 3.160 19 H -0.175 1.175 20 H -0.191 1.191 21 H -0.194 1.194 22 C -0.226 4.226 23 C -0.071 4.071 24 H 0.123 0.877 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.844 -2.868 -19.479 25.272 hybrid contribution 0.921 -0.592 0.731 1.316 sum -14.924 -3.460 -18.748 24.211 Atomic orbital electron populations 1.24113 0.95684 1.03056 0.98832 1.22818 0.96411 0.97810 1.01867 1.20654 0.97316 0.96926 0.97195 1.23117 0.94082 0.83348 1.00322 1.86473 1.50116 1.40932 1.49829 1.24403 0.77562 0.89842 0.77651 1.90721 1.65493 1.46059 1.40592 1.20238 0.96781 0.92690 0.98778 1.19212 0.95022 1.06642 0.95120 1.20968 0.92985 0.95566 0.97842 1.21236 1.02139 1.09538 0.93502 1.19980 0.91629 0.94027 0.87839 1.83940 1.21691 1.76960 1.31255 1.21875 0.83499 1.44097 0.99521 0.88106 1.26632 1.04717 0.96725 0.94112 1.70191 1.37030 1.45868 1.02778 0.84502 0.73917 0.78193 0.79401 1.17478 1.19116 1.19402 1.20449 0.92776 1.08730 1.00669 1.20912 0.98640 0.96689 0.90875 0.87663 0.87171 0.86708 0.89649 0.89022 0.91719 0.92001 0.83971 0.84197 0.84056 0.86313 0.91797 0.86791 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 14.32 67.78 0.97 -0.90 16 2 C -0.17 -2.07 9.52 25.65 0.24 -1.83 16 3 C -0.08 -1.09 6.04 29.85 0.18 -0.91 16 4 C 0.07 1.23 5.45 71.98 0.39 1.62 16 5 O -0.36 -7.52 10.22 -51.37 -0.53 -8.04 16 6 C 0.46 11.74 7.95 71.24 0.57 12.31 16 7 O -0.54 -18.85 15.78 21.95 0.35 -18.50 16 8 C -0.05 -0.98 5.94 29.10 0.17 -0.81 16 9 C -0.16 -4.96 4.38 -19.84 -0.09 -5.05 16 10 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 11 C -0.24 -11.06 9.17 22.39 0.21 -10.85 16 12 C 0.12 5.98 6.65 22.58 0.15 6.13 16 13 O -0.23 -14.37 9.76 -22.72 -0.22 -14.59 16 14 C -0.41 -24.68 9.49 67.92 0.64 -24.04 16 15 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 16 C -0.02 -1.42 5.49 84.84 0.47 -0.95 16 17 N -0.92 -57.43 13.67 21.62 0.30 -57.13 16 18 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 19 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 22 C -0.21 -9.15 9.99 22.39 0.22 -8.92 16 23 C -0.05 -1.83 9.69 22.25 0.22 -1.61 16 24 H 0.11 0.93 7.84 -2.91 -0.02 0.91 16 25 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 26 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 27 H 0.08 0.99 7.79 -2.39 -0.02 0.97 16 28 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.06 1.29 8.13 -2.38 -0.02 1.27 16 30 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 31 H 0.14 1.98 8.08 -2.39 -0.02 1.96 16 32 H 0.14 2.01 8.08 -2.39 -0.02 1.99 16 33 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 37 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -77.41 329.72 7.55 -69.87 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.06 Total: 20.35 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 4.56 Total: -37.57 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.30 Total: -57.13 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.40 Total: -41.14 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -77.41 7.55 -69.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111946777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.958 kcal (2) G-P(sol) polarization free energy of solvation -77.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds