Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99938 * 2 1 4 4 C 1.53000 * 109.47509 * 124.99713 * 3 2 1 5 5 C 1.53002 * 109.47369 * 179.97438 * 4 3 2 6 6 O 1.45192 * 109.46831 * 179.97438 * 5 4 3 7 7 C 1.34763 * 116.99726 * 179.97438 * 6 5 4 8 8 O 1.21513 * 119.99703 * 0.02562 * 7 6 5 9 9 C 1.47398 * 120.00219 * 180.02562 * 7 6 5 10 10 C 1.39729 * 120.19992 * 359.97438 * 9 7 6 11 11 C 1.37805 * 119.91272 * 179.97438 * 10 9 7 12 12 C 1.38588 * 120.33007 * 0.02562 * 11 10 9 13 13 C 1.38028 * 120.41707 * 359.97438 * 12 11 10 14 14 C 1.38832 * 120.07606 * 359.97438 * 13 12 11 15 15 O 1.35505 * 120.16557 * 179.97438 * 14 13 12 16 16 C 1.34808 * 116.99939 * 354.39821 * 15 14 13 17 17 H 1.08001 * 120.00267 * 5.06438 * 16 15 14 18 18 C 1.38707 * 119.99753 * 185.06265 * 16 15 14 19 19 N 1.31517 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99839 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47145 * 89.99789 * 20 18 16 22 22 H 1.48495 * 109.47055 * 210.00002 * 20 18 16 23 23 H 1.48500 * 109.47083 * 329.99780 * 20 18 16 24 24 H 1.07999 * 119.99781 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00413 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99781 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47384 * 4.99105 * 3 2 1 28 28 H 1.09007 * 109.46884 * 244.99470 * 3 2 1 29 29 H 1.08997 * 109.47295 * 59.99337 * 4 3 2 30 30 H 1.09007 * 109.46849 * 299.99778 * 4 3 2 31 31 H 1.09000 * 109.46665 * 60.00010 * 5 4 3 32 32 H 1.08994 * 109.46869 * 299.99935 * 5 4 3 33 33 H 1.07997 * 120.04805 * 0.26151 * 10 9 7 34 34 H 1.07992 * 119.83705 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.79247 * 179.97438 * 12 11 10 36 36 H 1.08000 * 119.96099 * 180.02562 * 13 12 11 37 37 H 0.97001 * 119.99735 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6580 1.1812 6 8 4.7219 2.6848 2.3030 7 6 5.4783 3.7908 2.4470 8 8 5.3703 4.7078 1.6571 9 6 6.4365 3.8882 3.5627 10 6 6.5637 2.8364 4.4739 11 6 7.4619 2.9335 5.5145 12 6 8.2406 4.0703 5.6631 13 6 8.1260 5.1174 4.7711 14 6 7.2274 5.0372 3.7158 15 8 7.1131 6.0643 2.8393 16 6 7.8147 7.1826 3.1121 17 1 8.4949 7.2023 3.9508 18 6 7.6629 8.3080 2.3156 19 7 6.8343 8.2842 1.2946 20 14 8.6356 9.8575 2.6932 21 1 9.9285 9.8204 1.9636 22 1 7.8581 11.0471 2.2627 23 1 8.8933 9.9366 4.1535 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0894 28 1 2.6214 1.4025 -0.9314 29 1 3.7399 0.5066 1.0922 30 1 2.4771 1.2358 2.1131 31 1 3.0957 3.4847 1.2705 32 1 4.3582 2.7549 0.2499 33 1 5.9623 1.9467 4.3600 34 1 7.5595 2.1198 6.2177 35 1 8.9414 4.1374 6.4821 36 1 8.7368 5.9996 4.8936 37 1 6.7285 9.0711 0.7374 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117994757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = -95.675279 kcal Electronic energy + Delta-G solvation = -20389.679996 eV Core-core repulsion = 17097.505680 eV Total energy + Delta-G solvation = -3292.174317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55643 -40.40164 -38.15314 -37.69945 -36.51160 -34.37863 -32.91624 -32.01938 -30.64259 -27.65977 -27.21530 -24.93971 -23.33531 -22.60773 -21.87388 -20.64186 -19.91590 -19.21232 -18.31707 -17.63196 -17.38935 -16.39562 -16.31162 -16.12886 -15.67723 -15.54833 -15.32194 -15.09367 -14.55030 -14.39160 -13.92733 -13.85100 -13.57720 -13.11361 -12.97077 -12.73064 -12.57361 -12.53938 -12.33863 -12.12993 -12.05209 -11.82828 -11.59436 -11.44883 -11.06037 -10.86404 -10.22691 -9.92880 -9.12431 -8.49068 -6.20387 -0.05017 0.68694 1.32963 1.36748 1.44370 1.52223 1.73303 1.77501 2.13920 2.81604 3.14376 3.36706 3.69864 3.86176 3.96966 4.08566 4.16110 4.25072 4.28621 4.38047 4.47612 4.52321 4.54679 4.65883 4.80161 4.93462 5.01816 5.04850 5.11173 5.13061 5.21542 5.42927 5.47219 5.60638 5.66186 5.76307 5.90146 5.92623 6.12327 6.89495 6.98161 7.71044 8.71207 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018327 B = 0.004118 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.460610 B = 6797.599848 C = 8254.074976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C -0.093 4.093 4 C -0.098 4.098 5 C 0.060 3.940 6 O -0.354 6.354 7 C 0.497 3.503 8 O -0.533 6.533 9 C -0.239 4.239 10 C -0.012 4.012 11 C -0.203 4.203 12 C -0.027 4.027 13 C -0.256 4.256 14 C 0.156 3.844 15 O -0.188 6.188 16 C -0.428 4.428 17 H 0.112 0.888 18 C -0.021 4.021 19 N -0.904 5.904 20 Si 1.024 2.976 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.246 1.246 24 H 0.095 0.905 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.131 0.869 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -14.873 4.942 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.176 4.176 3 C -0.130 4.130 4 C -0.135 4.135 5 C -0.014 4.014 6 O -0.272 6.272 7 C 0.344 3.656 8 O -0.423 6.423 9 C -0.241 4.241 10 C -0.030 4.030 11 C -0.222 4.222 12 C -0.045 4.045 13 C -0.275 4.275 14 C 0.101 3.899 15 O -0.091 6.091 16 C -0.504 4.504 17 H 0.129 0.871 18 C -0.220 4.220 19 N -0.539 5.539 20 Si 0.842 3.158 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.169 1.169 24 H 0.114 0.886 25 H 0.130 0.870 26 H 0.139 0.861 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.175 0.825 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.149 0.851 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.867 -14.439 4.281 15.828 hybrid contribution 0.162 1.224 -0.605 1.375 sum -4.705 -13.216 3.676 14.502 Atomic orbital electron populations 1.24051 0.95928 1.02612 1.00527 1.22934 0.96220 0.98062 1.00402 1.20668 0.97829 0.96632 0.97871 1.21440 0.97722 0.94145 1.00193 1.23224 0.90586 1.00518 0.87023 1.86464 1.50382 1.40375 1.49941 1.21453 0.79619 0.79766 0.84739 1.90984 1.66915 1.39787 1.44652 1.18508 1.05061 0.98616 1.01953 1.21401 0.95448 0.95279 0.90857 1.21229 0.99836 1.00240 1.00864 1.21543 0.95912 0.91014 0.96015 1.21300 1.04224 1.03306 0.98718 1.19991 0.92525 0.88097 0.89262 1.84146 1.61187 1.21096 1.42642 1.22105 1.23266 0.88626 1.16381 0.87072 1.26809 0.98045 1.02456 0.94733 1.70306 1.35535 1.31252 1.16854 0.84528 0.77206 0.74114 0.79919 1.18587 1.19791 1.16919 0.88642 0.87027 0.86058 0.91383 0.90442 0.89542 0.90126 0.92725 0.92414 0.82543 0.81592 0.82120 0.85104 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 14.32 67.78 0.97 -1.89 16 2 C -0.16 -2.52 9.52 25.64 0.24 -2.28 16 3 C -0.09 -1.75 5.66 29.85 0.17 -1.58 16 4 C -0.10 -2.14 5.58 30.60 0.17 -1.97 16 5 C 0.06 1.94 5.48 71.98 0.39 2.33 16 6 O -0.35 -13.43 9.47 -56.73 -0.54 -13.96 16 7 C 0.50 24.02 7.89 70.23 0.55 24.58 16 8 O -0.53 -31.56 14.96 26.79 0.40 -31.16 16 9 C -0.24 -10.87 5.89 -20.00 -0.12 -10.99 16 10 C -0.01 -0.39 9.61 22.53 0.22 -0.18 16 11 C -0.20 -5.60 10.02 22.25 0.22 -5.37 16 12 C -0.03 -0.82 10.03 22.30 0.22 -0.59 16 13 C -0.26 -10.71 9.16 22.36 0.20 -10.50 16 14 C 0.16 8.06 6.66 22.92 0.15 8.21 16 15 O -0.19 -11.86 7.84 1.07 0.01 -11.85 16 16 C -0.43 -25.40 9.49 67.93 0.64 -24.76 16 17 H 0.11 5.84 5.21 -2.91 -0.02 5.83 16 18 C -0.02 -1.21 5.49 84.85 0.47 -0.75 16 19 N -0.90 -58.16 13.67 21.62 0.30 -57.86 16 20 Si 1.02 43.21 29.55 68.60 2.03 45.23 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 24 H 0.10 1.40 7.84 -2.91 -0.02 1.38 16 25 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 26 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 27 H 0.07 1.32 7.79 -2.39 -0.02 1.30 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.67 8.14 -2.38 -0.02 1.66 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.16 4.18 7.61 -2.91 -0.02 4.16 16 34 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.13 5.43 5.64 -2.91 -0.02 5.41 16 37 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -80.91 326.93 7.77 -73.13 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.06 Total: 22.21 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 4.52 Total: -25.73 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.30 Total: -57.86 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -0.13 Total: -56.98 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -80.91 7.77 -73.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117994757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.541 kcal (2) G-P(sol) polarization free energy of solvation -80.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds