Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47271 * 2 1 4 4 C 1.46905 * 110.99908 * 287.95408 * 3 2 1 5 5 C 1.50697 * 109.46731 * 160.36202 * 4 3 2 6 6 H 1.08005 * 120.00040 * 4.67020 * 5 4 3 7 7 C 1.37876 * 119.99852 * 184.66817 * 5 4 3 8 8 N 1.31512 * 120.00299 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99856 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47352 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47192 * 120.00220 * 9 7 5 12 12 H 1.48505 * 109.47002 * 239.99688 * 9 7 5 13 13 C 1.46901 * 110.99727 * 164.00395 * 3 2 1 14 14 C 1.50700 * 109.47123 * 293.95290 * 13 3 2 15 15 N 1.27928 * 124.23513 * 89.97907 * 14 13 3 16 16 C 1.34662 * 117.84399 * 180.02562 * 15 14 13 17 17 C 1.40968 * 129.68996 * 179.97438 * 16 15 14 18 18 C 1.36183 * 120.42325 * 180.02562 * 17 16 15 19 19 C 1.38789 * 120.78242 * 359.97438 * 18 17 16 20 20 C 1.37655 * 120.06481 * 0.02562 * 19 18 17 21 21 C 1.39335 * 119.95326 * 359.97438 * 20 19 18 22 22 S 1.70653 * 124.23769 * 270.00125 * 14 13 3 23 23 H 1.08999 * 109.47058 * 179.32833 * 1 2 3 24 24 H 1.08996 * 109.46751 * 299.33160 * 1 2 3 25 25 H 1.09005 * 109.46944 * 59.32637 * 1 2 3 26 26 H 1.09004 * 109.46903 * 239.99987 * 2 1 3 27 27 H 1.08997 * 109.47268 * 120.00422 * 2 1 3 28 28 H 1.08996 * 109.47419 * 280.36012 * 4 3 2 29 29 H 1.09000 * 109.46688 * 40.36966 * 4 3 2 30 30 H 0.96993 * 120.00299 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46864 * 173.95181 * 13 3 2 32 32 H 1.09001 * 109.47340 * 53.95401 * 13 3 2 33 33 H 1.07996 * 119.79228 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.60871 * 179.72443 * 18 17 16 35 35 H 1.07998 * 119.97184 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.02323 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7966 2.0222 -1.3047 5 6 1.8479 3.5201 -1.1474 6 1 2.1026 3.9543 -0.1918 7 6 1.5697 4.3362 -2.2233 8 7 1.2591 3.8075 -3.3867 9 14 1.6340 6.1929 -2.0284 10 1 2.0057 6.5314 -0.6311 11 1 2.6464 6.7535 -2.9590 12 1 0.3017 6.7698 -2.3405 13 6 3.4382 1.4417 0.3779 14 6 3.5936 1.0065 1.8123 15 7 3.7921 -0.2026 2.1800 16 6 3.9121 -0.4473 3.4988 17 6 4.1311 -1.6663 4.1720 18 6 4.2222 -1.6973 5.5304 19 6 4.1023 -0.5335 6.2770 20 6 3.8881 0.6713 5.6466 21 6 3.7921 0.7222 4.2575 22 16 3.5264 2.0647 3.1495 23 1 -0.3633 -1.0276 -0.0120 24 1 -0.3633 0.5034 0.8959 25 1 -0.3633 0.5243 -0.8839 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5713 1.7034 -2.0020 29 1 0.8192 1.7306 -1.6890 30 1 1.0638 4.3816 -4.1437 31 1 3.8033 2.4628 0.2664 32 1 4.0131 0.7778 -0.2676 33 1 4.2265 -2.5817 3.6069 34 1 4.3858 -2.6391 6.0329 35 1 4.1763 -0.5732 7.3537 36 1 3.7944 1.5765 6.2282 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134829806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = 59.248754 kcal Electronic energy + Delta-G solvation = -18491.544004 eV Core-core repulsion = 15681.133320 eV Total energy + Delta-G solvation = -2810.410684 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27604 -37.65570 -36.17990 -32.65829 -31.14582 -31.05167 -29.60141 -27.54590 -25.58475 -23.73414 -22.63566 -22.41705 -20.69426 -19.77415 -18.36169 -16.62006 -16.43469 -15.63126 -15.26523 -15.20226 -14.61830 -14.20889 -14.02285 -13.82401 -13.50477 -13.01098 -12.49890 -12.21733 -12.07126 -11.94350 -11.60680 -11.31182 -11.19050 -10.94699 -10.85656 -10.76756 -10.58219 -10.30770 -10.06157 -9.82729 -9.38850 -9.24491 -8.55836 -8.44380 -8.04379 -7.38049 -6.05132 -4.06929 0.51560 1.11614 1.43400 1.97857 2.43368 3.29865 3.37792 3.42212 3.69186 4.03426 4.40885 4.61970 4.81405 4.93209 5.08048 5.23458 5.29076 5.31284 5.50627 5.75420 5.77610 5.85614 6.01432 6.09927 6.12670 6.17448 6.29442 6.31706 6.39823 6.60696 6.66977 6.82382 7.13841 7.27624 7.75321 7.81972 8.02899 8.10710 8.46578 9.00165 9.57593 11.05354 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.004595 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.085965 B = 6092.081432 C = 6791.073745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.528 5.528 4 C 0.191 3.809 5 C -0.508 4.508 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.126 3.874 14 C 0.127 3.873 15 N -0.480 5.480 16 C 0.089 3.911 17 C -0.070 4.070 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.068 4.068 21 C -0.199 4.199 22 S 0.129 5.871 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.025 0.975 27 H 0.067 0.933 28 H -0.007 1.007 29 H 0.043 0.957 30 H 0.261 0.739 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -8.401 16.338 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.254 5.254 4 C 0.067 3.933 5 C -0.546 4.546 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.005 4.005 14 C -0.157 4.157 15 N -0.195 5.195 16 C -0.032 4.032 17 C -0.091 4.091 18 C -0.132 4.132 19 C -0.137 4.137 20 C -0.090 4.090 21 C -0.319 4.319 22 S 0.387 5.613 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.011 0.989 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.956 -7.375 16.083 18.374 hybrid contribution 0.523 -0.284 -0.307 0.670 sum 5.479 -7.659 15.776 18.373 Atomic orbital electron populations 1.21726 0.95437 0.99975 1.02749 1.22107 0.95888 0.90291 1.00052 1.62199 1.12926 1.15299 1.34984 1.19849 0.96982 0.94243 0.82245 1.21188 1.46554 0.90503 0.96397 0.91828 1.24971 0.95340 0.98965 0.95177 1.69957 1.47481 1.35220 1.01040 0.86477 0.77631 0.85342 0.78211 1.19574 1.21108 1.21007 1.20776 0.92678 1.02197 0.84872 1.27051 0.96247 0.90380 1.02069 1.66324 1.17823 1.20271 1.15049 1.19268 1.02444 0.94190 0.87294 1.20356 0.99351 0.95400 0.93947 1.20653 1.00534 0.98711 0.93301 1.21045 1.00758 0.91993 0.99914 1.20323 0.99388 0.98664 0.90631 1.24079 1.10551 0.97690 0.99549 1.84172 1.70500 1.09748 0.96872 0.93616 0.92641 0.91947 0.95672 0.91416 0.98926 0.93910 0.92929 0.87484 0.92443 0.85169 0.85207 0.85184 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.99 37.16 0.37 -2.18 16 2 C 0.05 0.87 5.55 -3.82 -0.02 0.85 16 3 N -0.53 -11.33 4.37 -237.51 -1.04 -12.37 16 4 C 0.19 4.83 4.59 -4.97 -0.02 4.81 16 5 C -0.51 -13.79 8.61 -34.44 -0.30 -14.09 16 6 H 0.06 1.71 7.66 -52.48 -0.40 1.31 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.13 2.44 5.35 -4.98 -0.03 2.41 16 14 C 0.13 2.25 6.02 -13.90 -0.08 2.17 16 15 N -0.48 -8.44 9.35 -9.08 -0.08 -8.53 16 16 C 0.09 1.40 7.00 -84.96 -0.59 0.80 16 17 C -0.07 -0.87 10.05 -39.29 -0.39 -1.27 16 18 C -0.11 -1.09 9.94 -40.12 -0.40 -1.49 16 19 C -0.12 -1.10 10.04 -39.59 -0.40 -1.50 16 20 C -0.07 -0.78 10.07 -39.39 -0.40 -1.18 16 21 C -0.20 -2.92 6.56 -38.54 -0.25 -3.17 16 22 S 0.13 2.03 23.11 -107.50 -2.48 -0.45 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 1.22 6.52 -51.93 -0.34 0.88 16 26 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 27 H 0.07 1.29 6.01 -51.93 -0.31 0.97 16 28 H -0.01 -0.19 8.00 -51.93 -0.42 -0.60 16 29 H 0.04 1.16 6.24 -51.93 -0.32 0.83 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.11 2.10 7.32 -51.93 -0.38 1.72 16 32 H 0.06 1.10 8.12 -51.93 -0.42 0.67 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -29.97 314.93 -10.44 -40.41 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.68 Total: -2.28 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.61 Total: -12.35 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.39 Total: -46.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.48 Total: -0.45 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.97 -10.44 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134829806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.663 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds