Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47271 * 2 1 4 4 C 1.46905 * 110.99908 * 287.95408 * 3 2 1 5 5 C 1.50697 * 109.46731 * 160.36202 * 4 3 2 6 6 H 1.08005 * 120.00040 * 4.67020 * 5 4 3 7 7 C 1.37876 * 119.99852 * 184.66817 * 5 4 3 8 8 N 1.31512 * 120.00299 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99856 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47352 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47192 * 120.00220 * 9 7 5 12 12 H 1.48505 * 109.47002 * 239.99688 * 9 7 5 13 13 C 1.46901 * 110.99727 * 164.00395 * 3 2 1 14 14 C 1.50700 * 109.47123 * 293.95290 * 13 3 2 15 15 N 1.27928 * 124.23513 * 89.97907 * 14 13 3 16 16 C 1.34662 * 117.84399 * 180.02562 * 15 14 13 17 17 C 1.40968 * 129.68996 * 179.97438 * 16 15 14 18 18 C 1.36183 * 120.42325 * 180.02562 * 17 16 15 19 19 C 1.38789 * 120.78242 * 359.97438 * 18 17 16 20 20 C 1.37655 * 120.06481 * 0.02562 * 19 18 17 21 21 C 1.39335 * 119.95326 * 359.97438 * 20 19 18 22 22 S 1.70653 * 124.23769 * 270.00125 * 14 13 3 23 23 H 1.08999 * 109.47058 * 179.32833 * 1 2 3 24 24 H 1.08996 * 109.46751 * 299.33160 * 1 2 3 25 25 H 1.09005 * 109.46944 * 59.32637 * 1 2 3 26 26 H 1.09004 * 109.46903 * 239.99987 * 2 1 3 27 27 H 1.08997 * 109.47268 * 120.00422 * 2 1 3 28 28 H 1.08996 * 109.47419 * 280.36012 * 4 3 2 29 29 H 1.09000 * 109.46688 * 40.36966 * 4 3 2 30 30 H 0.96993 * 120.00299 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46864 * 173.95181 * 13 3 2 32 32 H 1.09001 * 109.47340 * 53.95401 * 13 3 2 33 33 H 1.07996 * 119.79228 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.60871 * 179.72443 * 18 17 16 35 35 H 1.07998 * 119.97184 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.02323 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7966 2.0222 -1.3047 5 6 1.8479 3.5201 -1.1474 6 1 2.1026 3.9543 -0.1918 7 6 1.5697 4.3362 -2.2233 8 7 1.2591 3.8075 -3.3867 9 14 1.6340 6.1929 -2.0284 10 1 2.0057 6.5314 -0.6311 11 1 2.6464 6.7535 -2.9590 12 1 0.3017 6.7698 -2.3405 13 6 3.4382 1.4417 0.3779 14 6 3.5936 1.0065 1.8123 15 7 3.7921 -0.2026 2.1800 16 6 3.9121 -0.4473 3.4988 17 6 4.1311 -1.6663 4.1720 18 6 4.2222 -1.6973 5.5304 19 6 4.1023 -0.5335 6.2770 20 6 3.8881 0.6713 5.6466 21 6 3.7921 0.7222 4.2575 22 16 3.5264 2.0647 3.1495 23 1 -0.3633 -1.0276 -0.0120 24 1 -0.3633 0.5034 0.8959 25 1 -0.3633 0.5243 -0.8839 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.5713 1.7034 -2.0020 29 1 0.8192 1.7306 -1.6890 30 1 1.0638 4.3816 -4.1437 31 1 3.8033 2.4628 0.2664 32 1 4.0131 0.7778 -0.2676 33 1 4.2265 -2.5817 3.6069 34 1 4.3858 -2.6391 6.0329 35 1 4.1763 -0.5732 7.3537 36 1 3.7944 1.5765 6.2282 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134829806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = 41.198880 kcal Electronic energy + Delta-G solvation = -18492.326706 eV Core-core repulsion = 15681.133320 eV Total energy + Delta-G solvation = -2811.193386 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36200 -39.08470 -37.48441 -34.74475 -32.44994 -32.04305 -31.07502 -29.17633 -27.21829 -24.89917 -24.45106 -23.49258 -21.97328 -21.33990 -19.46527 -18.58866 -17.56737 -17.02380 -16.81560 -16.34863 -16.12558 -15.60859 -15.34233 -15.22971 -14.84268 -14.48089 -14.09289 -13.64757 -13.34011 -13.25825 -12.97099 -12.86645 -12.68491 -12.66171 -12.56162 -12.27536 -12.12266 -11.78010 -11.65339 -11.29760 -11.08707 -10.67564 -10.56319 -9.61848 -9.18448 -9.07060 -8.18118 -6.27789 -0.58174 0.21187 0.28591 0.79473 1.33237 1.42797 1.43978 1.57097 2.42126 2.72122 2.82970 3.14517 3.33042 3.65153 3.92920 4.13028 4.16035 4.22257 4.34160 4.37752 4.45569 4.56110 4.63463 4.73787 4.85660 4.96172 4.97357 5.16753 5.23250 5.24382 5.29485 5.30682 5.44759 5.67244 5.83220 6.05045 6.23288 6.49379 6.62430 6.86200 7.41500 8.92814 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.004595 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.085965 B = 6092.081432 C = 6791.073745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.207 3.793 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.133 3.867 14 C 0.099 3.901 15 N -0.490 5.490 16 C 0.049 3.951 17 C -0.082 4.082 18 C -0.098 4.098 19 C -0.093 4.093 20 C -0.081 4.081 21 C -0.206 4.206 22 S 0.126 5.874 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.019 0.981 27 H 0.075 0.925 28 H -0.033 1.033 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.139 0.861 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 -8.956 19.809 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 N -0.258 5.258 4 C 0.082 3.918 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.002 3.998 14 C -0.185 4.185 15 N -0.205 5.205 16 C -0.071 4.071 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.103 4.103 21 C -0.325 4.325 22 S 0.383 5.617 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.093 0.907 28 H -0.015 1.015 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.157 0.843 34 H 0.188 0.812 35 H 0.191 0.809 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.360 -7.949 19.570 21.792 hybrid contribution 0.458 -0.289 -1.176 1.295 sum 5.819 -8.237 18.393 20.977 Atomic orbital electron populations 1.21672 0.94283 1.01613 1.01567 1.22137 0.96804 0.89096 1.00003 1.62118 1.14692 1.16506 1.32435 1.19488 0.94806 0.94001 0.83545 1.21461 1.46359 0.91511 0.96471 0.91839 1.25838 0.94809 1.03877 0.94735 1.70079 1.48376 1.37053 1.01876 0.85400 0.77731 0.79328 0.78590 1.18595 1.20477 1.20566 1.20562 0.91127 1.01540 0.86574 1.26481 0.99253 0.91318 1.01490 1.66226 1.17087 1.20343 1.16883 1.19642 1.04898 0.95880 0.86644 1.20687 0.99613 0.94614 0.95366 1.21174 0.97904 1.00663 0.92140 1.21626 0.97117 0.90727 1.02017 1.20758 0.99502 1.00744 0.89342 1.24278 1.11068 0.96422 1.00719 1.83945 1.70848 1.10261 0.96670 0.90563 0.92750 0.94038 0.96251 0.90704 1.01539 0.96130 0.92710 0.88562 0.93118 0.84346 0.81209 0.80886 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.99 71.98 0.72 -4.17 16 2 C 0.05 1.91 5.55 86.30 0.48 2.39 16 3 N -0.53 -23.89 4.37 -905.35 -3.96 -27.84 16 4 C 0.21 11.03 4.59 85.55 0.39 11.43 16 5 C -0.52 -29.12 8.61 25.60 0.22 -28.90 16 6 H 0.06 3.49 7.66 -2.91 -0.02 3.47 16 7 C 0.01 0.31 5.46 84.65 0.46 0.78 16 8 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 9 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 C 0.13 5.44 5.35 85.56 0.46 5.89 16 14 C 0.10 3.62 6.02 88.68 0.53 4.15 16 15 N -0.49 -17.55 9.35 -182.51 -1.71 -19.25 16 16 C 0.05 1.51 7.00 39.79 0.28 1.79 16 17 C -0.08 -1.85 10.05 22.46 0.23 -1.63 16 18 C -0.10 -1.47 9.94 21.92 0.22 -1.26 16 19 C -0.09 -1.31 10.04 22.26 0.22 -1.08 16 20 C -0.08 -1.60 10.07 22.40 0.23 -1.38 16 21 C -0.21 -5.78 6.56 22.94 0.15 -5.62 16 22 S 0.13 3.99 23.11 -56.49 -1.31 2.68 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.67 6.52 -2.38 -0.02 1.66 16 26 H 0.02 0.79 8.05 -2.38 -0.02 0.77 16 27 H 0.07 2.90 6.01 -2.39 -0.01 2.89 16 28 H -0.03 -1.89 8.00 -2.39 -0.02 -1.91 16 29 H 0.02 1.18 6.24 -2.39 -0.01 1.16 16 30 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 31 H 0.10 4.04 7.32 -2.39 -0.02 4.02 16 32 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 33 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 35 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -67.15 314.93 1.00 -66.14 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.08 Total: 5.32 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 4.59 Total: -17.61 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -5.38 Total: -102.52 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.31 Total: 2.68 kcal Total: -67.15 1.00 -66.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134829806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.343 kcal (2) G-P(sol) polarization free energy of solvation -67.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds