Wall clock time and date at job start Mon Mar 30 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.51592 * 2 1 4 4 C 1.53168 * 109.54619 * 240.12341 * 2 1 3 5 5 C 1.51829 * 107.39490 * 181.51671 * 4 2 1 6 6 O 1.21343 * 121.72916 * 220.04066 * 5 4 2 7 7 C 1.47076 * 116.54438 * 39.76803 * 5 4 2 8 8 C 1.39788 * 120.68798 * 168.14828 * 7 5 4 9 9 C 1.36582 * 119.78599 * 179.67766 * 8 7 5 10 10 C 1.39276 * 120.26787 * 359.97119 * 9 8 7 11 11 O 1.35668 * 119.71684 * 180.16280 * 10 9 8 12 12 C 1.42893 * 116.99944 * 0.02562 * 11 10 9 13 13 C 1.50696 * 109.47541 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00454 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99655 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99931 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47035 * 89.99811 * 17 15 13 19 19 H 1.48506 * 109.46741 * 209.99613 * 17 15 13 20 20 H 1.48494 * 109.47323 * 329.99826 * 17 15 13 21 21 C 1.38727 * 120.56978 * 0.14585 * 10 9 8 22 22 C 1.38547 * 119.90343 * 0.04331 * 21 10 9 23 23 O 1.35328 * 120.01790 * 179.37447 * 22 21 10 24 24 H 1.09001 * 109.47520 * 299.93542 * 1 2 3 25 25 H 1.08999 * 109.47136 * 59.93231 * 1 2 3 26 26 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47167 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46572 * 300.06771 * 3 2 1 29 29 H 1.08999 * 109.46870 * 60.06541 * 3 2 1 30 30 H 1.08992 * 109.89430 * 61.98585 * 4 2 1 31 31 H 1.09003 * 109.72786 * 300.95291 * 4 2 1 32 32 H 1.08006 * 120.10756 * 359.65535 * 8 7 5 33 33 H 1.07997 * 119.86815 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47357 * 299.99611 * 12 11 10 35 35 H 1.09007 * 109.47424 * 59.99543 * 12 11 10 36 36 H 0.96999 * 119.99890 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.04339 * 179.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 6 2.0424 -0.7190 -1.2516 5 6 3.5592 -0.7240 -1.1832 6 8 4.2429 -0.5355 -2.1677 7 6 4.1567 -0.9629 0.1393 8 6 5.5228 -1.2305 0.2671 9 6 6.0596 -1.4431 1.5049 10 6 5.2517 -1.3936 2.6384 11 8 5.7973 -1.6033 3.8627 12 6 7.2008 -1.8672 3.9109 13 6 7.6246 -2.0721 5.3425 14 1 6.8951 -2.0068 6.1363 15 6 8.9438 -2.3419 5.6392 16 7 9.8322 -2.4209 4.6727 17 14 9.4691 -2.5950 7.4138 18 1 9.3549 -4.0338 7.7634 19 1 10.8778 -2.1554 7.5805 20 1 8.5924 -1.7973 8.3082 21 6 3.8941 -1.1316 2.5263 22 6 3.3327 -0.9174 1.2778 23 8 2.0063 -0.6741 1.1647 24 1 -0.3634 0.5128 0.8905 25 1 -0.3633 0.5149 -0.8894 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1311 1.4413 -0.0005 28 1 1.6771 1.9566 -0.8894 29 1 1.6791 1.9559 0.8906 30 1 1.7129 -0.1888 -2.1450 31 1 1.6682 -1.7427 -1.2670 32 1 6.1516 -1.2693 -0.6101 33 1 7.1147 -1.6503 1.6052 34 1 7.4216 -2.7655 3.3343 35 1 7.7443 -1.0218 3.4889 36 1 10.7602 -2.6111 4.8813 37 1 3.2755 -1.0956 3.4108 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154636306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:37 Heat of formation + Delta-G solvation = -99.617441 kcal Electronic energy + Delta-G solvation = -20981.725989 eV Core-core repulsion = 17689.380727 eV Total energy + Delta-G solvation = -3292.345262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21794 -39.07945 -38.39842 -36.38577 -34.16811 -33.01477 -30.60879 -30.34278 -28.20841 -27.69427 -27.47429 -23.87856 -22.89417 -22.12450 -21.42428 -18.87772 -18.10350 -16.91162 -16.69690 -16.38148 -15.65101 -15.35821 -14.94941 -14.84487 -14.74497 -14.54426 -14.24962 -13.64694 -13.33135 -13.21446 -12.78876 -12.58543 -12.48818 -12.41694 -12.06622 -11.97924 -11.70147 -11.30069 -11.11921 -11.06497 -10.85458 -10.58882 -10.28019 -10.18132 -9.64373 -9.38258 -8.70131 -8.32082 -7.77058 -6.32028 -4.36651 0.92662 1.61745 2.50194 2.87459 3.20587 3.26126 3.30737 3.89512 4.02957 4.07705 4.27483 4.41698 4.49023 4.57083 4.85140 4.96487 5.05535 5.18068 5.23537 5.27725 5.36221 5.43057 5.46275 5.58155 5.60145 5.76846 5.77628 5.90248 6.16311 6.28960 6.41106 6.63385 6.77691 6.81561 7.01348 7.41389 7.52304 7.59050 7.84100 8.25924 8.73816 9.28954 10.79047 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.003705 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.867265 B = 7556.072012 C = 8126.089627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.122 3.878 3 C -0.183 4.183 4 C -0.193 4.193 5 C 0.409 3.591 6 O -0.464 6.464 7 C -0.313 4.313 8 C 0.014 3.986 9 C -0.252 4.252 10 C 0.225 3.775 11 O -0.304 6.304 12 C 0.189 3.811 13 C -0.528 4.528 14 H 0.072 0.928 15 C 0.062 3.938 16 N -0.893 5.893 17 Si 0.915 3.085 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.270 1.270 21 C -0.218 4.218 22 C 0.217 3.783 23 O -0.303 6.303 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.268 0.732 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 4.686 -10.121 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.085 3.915 3 C -0.240 4.240 4 C -0.231 4.231 5 C 0.289 3.711 6 O -0.341 6.341 7 C -0.315 4.315 8 C -0.004 4.004 9 C -0.271 4.271 10 C 0.174 3.826 11 O -0.215 6.215 12 C 0.117 3.883 13 C -0.566 4.566 14 H 0.090 0.910 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.741 3.259 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.237 4.237 22 C 0.171 3.829 23 O -0.217 6.217 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.011 4.712 -10.320 19.623 hybrid contribution 0.751 -0.208 0.577 0.969 sum -15.260 4.503 -9.743 18.657 Atomic orbital electron populations 1.21803 0.90555 1.03669 1.03437 1.21796 0.95630 0.91463 0.82622 1.22504 1.02674 0.95189 1.03664 1.23031 0.95626 1.04252 1.00144 1.22163 0.90429 0.71134 0.87341 1.90530 1.66306 1.38272 1.38989 1.20165 0.95901 1.21676 0.93786 1.20602 0.92462 0.89934 0.97412 1.21220 1.01953 1.11863 0.92048 1.19203 0.91409 0.86087 0.85912 1.86105 1.30120 1.81083 1.24150 1.20829 0.71431 0.96493 0.99562 1.20953 0.94211 1.50222 0.91203 0.90966 1.24938 0.95753 0.94653 0.98756 1.69942 1.03078 1.47830 1.32218 0.86217 0.77850 0.78725 0.83067 1.20217 1.20860 1.19424 1.19573 0.92997 1.15141 0.96029 1.18525 0.81562 0.90588 0.92221 1.85772 1.20071 1.72910 1.42916 0.90864 0.90141 0.91135 0.91567 0.90595 0.90688 0.87622 0.87213 0.84979 0.83916 0.95488 0.95495 0.92191 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 2 C 0.12 1.23 1.11 -90.53 -0.10 1.13 16 3 C -0.18 -1.79 8.30 37.16 0.31 -1.48 16 4 C -0.19 -1.97 5.24 -27.24 -0.14 -2.11 16 5 C 0.41 5.88 5.89 -30.17 -0.18 5.70 16 6 O -0.46 -7.77 17.41 5.50 0.10 -7.67 16 7 C -0.31 -4.96 5.25 -104.84 -0.55 -5.51 16 8 C 0.01 0.24 9.59 -39.60 -0.38 -0.14 16 9 C -0.25 -4.69 8.96 -39.79 -0.36 -5.05 16 10 C 0.22 4.44 6.69 -39.01 -0.26 4.18 16 11 O -0.30 -7.05 10.10 -18.71 -0.19 -7.24 16 12 C 0.19 4.83 4.48 36.00 0.16 5.00 16 13 C -0.53 -14.64 9.43 -34.44 -0.32 -14.97 16 14 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 17 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C -0.22 -3.77 9.91 -39.29 -0.39 -4.16 16 22 C 0.22 3.39 6.01 -38.57 -0.23 3.16 16 23 O -0.30 -4.03 9.63 -17.68 -0.17 -4.20 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.80 6.42 -51.93 -0.33 0.46 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.13 2.04 7.81 -52.48 -0.41 1.63 16 33 H 0.14 2.75 6.25 -52.49 -0.33 2.42 16 34 H 0.03 0.71 7.64 -51.93 -0.40 0.32 16 35 H 0.03 0.71 7.64 -51.93 -0.40 0.31 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -30.07 313.40 -6.83 -36.90 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.79 Total: -0.48 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.21 Total: -13.29 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: 0.74 Total: -24.54 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.26 Total: -19.11 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.07 -6.83 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154636306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.720 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds